Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0006810 | OGI:11057480 | 7/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:5562421-5564269 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaacaaatgaggataagagaaaattgcttctaatttgtccaagtgggatatatggcgtaatattcttccattttcatccgaaaggacttttgtctatttctctattccactccatctagatctaagaaagaactcaatgcaatgaaattctactagtatagaaaaaagaggaatagatacaaggtctcaaaccttgttatagaatttttccttcaaagaaaaagaaatatcatatagagtcagcgaataaagcggattcattaacaactcaatttacagatcaaaaatgaaaaaaaaaagaaagcattgccttctttcctgtatcttgtatttatcgtacttttgccttggggagtctctttctcttttaacaaatgtctggaactttggattaagaattggtggaataccaggcaatcccaaactctcttaactgctattcaagagaaaagagttctagaaagattcatggaattagaagaccTttttatcttggacgaaatgataaaagagaaaccgaatacacatgtacaaaacccccctataggaatacgcaaggaaataatacaattggccaaaatagataatgagggtcatctccatatcattttgcatttctcgacaaatataatctgtttggctattctaagtggttctttttttctgggtaaagaggaacttgttattttgaattcttgggttcaggaattcttctataacttaaatgacttagtaaaagctttttttattcttttagttactgatttttttgttggatttcactccacccgcggttgggaactactaattcgttgggtctataacgatcttggatgggttcctaacgagctaattttcactatttttgtttgtagttttcctgtgattctagatacatgtttgaaattttgggtcttttttgtttaaaccgcctatctccttcgcttgtagtcatttatcattcaattagtgaagcataaactcatttgatctcctgatattaatcaaaattagcatcctttttcctttagaaagaaagcctttttccattttagcaaaattctttttttctatttctacctgctcaaggtattcatcattccagtacaactgttgcagtagaatgacaacagattcgtgtatagggaactagattagcttagctacctatctaatttattgtagaaattccgggatctgtgattggacatggaaaatagaaatactttttcttgggtaaaggaacagatgactcgattgatttctatatcgatcatgatatacgtaataactcggacatctatttcaaatgcatatcccatttttgcgcagcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgccaattagcgaataagcctgtggatattgaagttccccaagcagtgcttcccgatactgtatttgaagcagttctttgaattccttatgatatgcaactgaaacaagttcttgctaatgggaaaaagagagggttgaatgtgggtgctgttcttattttgcccgagggattcgaattagcgccgcccgaccgtatttctccttagttgaaagaaaagataggaaatatctcttttcagagttatcgtcccaataaaaaaaatattcttgtgataggcccagttcccggtaagaaatatagtgaaatcgtctttcccattctttcccccgaccctgctatgaagaaagacgttcatttcttaaaatatcccatatatgtggggggaaaccgaggaaggggacagatctatcctgatggtagcaagagtaacaatacggtctataatgcaacgtcaacaggtgta
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| CDS seq | atggaattagaagaccTttttatcttggacgaaatgataaaagagaaaccgaatacacatgtacaaaacccccctataggaatacgcaaggaaataatacaattggccaaaatagataatgaggttactgatttttttgttggatttcactccacccgcggttgggaactactaattcgttgggtctataacgatcttggatgggttcctaacgagctaattttcactatttttcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgccaattagcgaataagcctgtggatattgaagttccccaagcagtgcttcccgatactagttatcgtcccaataaaaaaaatattcttgtgataggcccagttcccggtaagaaatatagtgaaatcgtctttcccattctttcccccgaccctgctatgaagaaagacgttcatttcttaaaatatcccatatatgtggggggaaaccgaggaaggggacagatctatcctgatggtagcaagagtaacaatacggtctataatgcaacgtcaacaggtgta
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| Protein seq | MELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTRGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCQLANKPVDIEVPQAVLPDTSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTGV |
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| Function | Cytochrome f [UniProtKB/Swiss-Prot:Q06GY4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0006810 | OsKeNa_12g0006810.01 | Chr12 | 5562421 | 5564269 | + | NAM | ||
| CDS seq | atggaattagaagaccTttttatcttggacgaaatgataaaagagaaaccgaatacacatgtacaaaacccccctataggaatacgcaaggaaataatacaattggccaaaatagataatgaggttactgatttttttgttggatttcactccacccgcggttgggaactactaattcgttgggtctataacgatcttggatgggttcctaacgagctaattttcactatttttcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgccaattagcgaataagcctgtggatattgaagttccccaagcagtgcttcccgatactagttatcgtcccaataaaaaaaatattcttgtgataggcccagttcccggtaagaaatatagtgaaatcgtctttcccattctttcccccgaccctgctatgaagaaagacgttcatttcttaaaatatcccatatatgtggggggaaaccgaggaaggggacagatctatcctgatggtagcaagagtaacaatacggtctataatgcaacgtcaacaggtgta
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| Protein seq | MELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTRGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCQLANKPVDIEVPQAVLPDTSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTGV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0006810 | OsKeNa_12g0006810.02 | Chr12 | 5562422 | 5564056 | + | IsoSeq | ||
| CDS seq | atgaaaaaaaaaagaaagcattgccttctttcctgtatcttgtatttatcgtacttttgccttggggagtctctttctcttttaacaaatgtctggaactttggattaagaattggtggaataccaggcaatcccaaactc |
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| Protein seq | MKKKRKHCLLSCILYLSYFCLGESLSLLTNVWNFGLRIGGIPGNPKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 23.778913 | 2.520250 | 27.930387 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21290 | RBH | 92.993591 | 84.670120 | 21.074438 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006730 | RBH | 33.934486 | 11.572700 | 50.392456 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006800 | RBH | 45.958233 | 6.223823 | 46.481441 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006700 | RBH | 11.638383 | 0.231060 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | SBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019650 | RBH | 418.873779 | 0.0 | 134.429916 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006570 | RBH | 127.250755 | 10.824901 | 169.971725 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020780 | SBH | 479.683258 | 191.294098 | 783.891907 |
