Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0019090 | OGI:10064500 | 4/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:23884429-23885151 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaaatcggtggatcggggaggcgacggcgccgcgatccatcagcgactcaggaggctgcggcgttcaccagtggcggcgatggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatattgcccaggtgaggtgttgatccattgatcgtatctattcccaggcaacggtgtaatccttcatatttttctttgatttttcttctcgctgatcgagcgttttcttcctttttttcgtgtttcctgttaacttgtgaatttatgttttaggatgcgtagatttggggtcagagatgcattatttccaatgaattaactagttgaatgactaagcgctcatgcaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttgagaatccggaatatttctcagggaaataatctttgtgattctcgttggtattctacttttttatttttaaagtatgtgcggggtatatgtatgaattaaatagcgtatacttctagtattctgattatgattgtacattatttttaatcagcatacgcttcaatctg
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| CDS seq | atggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatattgcccaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttga |
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| Protein seq | MACMSRRWAERGRGVCGLPEDNNNDPSAILCARPCVNGVEMSARVAVRRYCPGGGRRSDITVQWENGFVQRLSLPRWIVNLSVAVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019090 | OsKeNa_10g0019090.01 | Chr10 | 23884429 | 23885151 | + | NAM | ||
| CDS seq | atggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatattgcccaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttga
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| Protein seq | MACMSRRWAERGRGVCGLPEDNNNDPSAILCARPCVNGVEMSARVAVRRYCPGGGRRSDITVQWENGFVQRLSLPRWIVNLSVAVV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.223746 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018720 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013480 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018500 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013710 | SBH | 1.931433 | 0.0 | 6.217356 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0193000 | SBH | 0.0992995 | 0.051458 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013200 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013720 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013370 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013970 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
