Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0018350 | OGI:10063100 | 8/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:23347796-23349014 | ||||||||
| Gene Symbol | GSTU23, OsGSTU23 | ||||||||||
| DNA seq | agagcagcagtacaatggcaatagcactagcactgtatgtctgtatagctgcttatgatcgatgaaccagagaacataacacgcatacatgtccagactttacacattaataaccccacaaataaactaaccatgacttgaaaatggcactgtaataacacgattttttctttattacaagaaacccaatgatccaatcgaaaacgattttccactcacttggcagcggtggaagcagcagcagctgctacacgagcctggactttcctggcgaactccacggcgtcgtccgcgtccggcaccacccccttggccgcctcgacctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcgaccaacgccaCGCcgtgcaacctgcggatcgcttcgagaaagtgcaggttgcaaccgagcgcgaggtcgacgtacccgacggtgtcgccgccgaagaagggcttcccgttcttcgcggccacctcggcgaacgccttctccagctgcgccatcgccgccagcgtctcgtcggccttcgccgccctctcctcctccgtcgccgccctcaaaacgccaaccataccagggaccatctgcagacaaacaagcaagcatgcaaagcatattcacctgctcatccaagatccaacagaagcacagatcgaacacgagagctacaccactatagtacagtgctctgtacgtactcaccttgtcgtcgacgtaggcggcccagaagcgggcgacggcgcggtcgtaggggtcggcggggaggatggagggcGacgtgggggagggcgcccaggcctcgtcgacgtactgcacgatgacgagcgactcggagacgggcttgccgccatggatgaggacggggatcttcttgtgcaccgggttggagctgaggaggagctcgctcttgttggcgaggtcctcctcgatgtactcgtagctcacgcccttcaacttgagcgcgatgcatacgcggatcgcgaaggggctcatcaccaggccgagcaccttcacgtcgtcgtccttgcccgccattgcttttccccttctcttcctttgatttcctctcggctggatactgagatgaggtcttgtctgatactacggtgttatctgtgcgactgaccgattgtgcaggataAACaccacacgtcttgggcctttatacagccacaactccaagtccactggagtg
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| CDS seq | atggcgggcaaggacgacgacgtgaaggtgctcggcctggtgatgagccccttcgcgatccgcgtatgcatcgcgctcaagttgaagggcgtgagctacgagtacatcgaggaggacctcgccaacaagagcgagctcctcctcagctccaacccggtgcacaagaagatccccgtcctcatccatggcggcaagcccgtctccgagtcgctcgtcatcgtgcagtacgtcgacgaggcctgggcgccctcccccacgtCgccctccatcctccccgccgacccctacgaccgcgccgtcgcccgcttctgggccgcctacgtcgacgacaagatggtccctggtatggttggcgttttgagggcggcgacggaggaggagagggcggcgaaggccgacgagacgctggcggcgatggcgcagctggagaaggcgttcgccgaggtggccgcgaagaacgggaagcccttcttcggcggcgacaccgtcgggtacgtcgacctcgcgctcggttgcaacctgcactttctcgaagcgatccgcaggttgcacgGCGtggcgttggtcgacgccggcaagaccccgctcctggcggcgtgggcggagcggttcgtggaggtcgaggcggccaagggggtggtgccggacgcggacgacgccgtggagttcgccaggaaagtccaggctcgtgtagcagctgctgctgcttccaccgctgccaagtga
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| Protein seq | MAGKDDDVKVLGLVMSPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSNPVHKKIPVLIHGGKPVSESLVIVQYVDEAWAPSPTSPSILPADPYDRAVARFWAAYVDDKMVPGMVGVLRAATEEERAAKADETLAAMAQLEKAFAEVAAKNGKPFFGGDTVGYVDLALGCNLHFLEAIRRLHGVALVDAGKTPLLAAWAERFVEVEAAKGVVPDADDAVEFARKVQARVAAAAASTAAK |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0018350 | OsKeNa_10g0018350.01 | Chr10 | 23347796 | 23349014 | - | NAM | ||
| CDS seq | atggcgggcaaggacgacgacgtgaaggtgctcggcctggtgatgagccccttcgcgatccgcgtatgcatcgcgctcaagttgaagggcgtgagctacgagtacatcgaggaggacctcgccaacaagagcgagctcctcctcagctccaacccggtgcacaagaagatccccgtcctcatccatggcggcaagcccgtctccgagtcgctcgtcatcgtgcagtacgtcgacgaggcctgggcgccctcccccacgtCgccctccatcctccccgccgacccctacgaccgcgccgtcgcccgcttctgggccgcctacgtcgacgacaagatggtccctggtatggttggcgttttgagggcggcgacggaggaggagagggcggcgaaggccgacgagacgctggcggcgatggcgcagctggagaaggcgttcgccgaggtggccgcgaagaacgggaagcccttcttcggcggcgacaccgtcgggtacgtcgacctcgcgctcggttgcaacctgcactttctcgaagcgatccgcaggttgcacgGCGtggcgttggtcgacgccggcaagaccccgctcctggcggcgtgggcggagcggttcgtggaggtcgaggcggccaagggggtggtgccggacgcggacgacgccgtggagttcgccaggaaagtccaggctcgtgtagcagctgctgctgcttccaccgctgccaagtga
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| Protein seq | MAGKDDDVKVLGLVMSPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSNPVHKKIPVLIHGGKPVSESLVIVQYVDEAWAPSPTSPSILPADPYDRAVARFWAAYVDDKMVPGMVGVLRAATEEERAAKADETLAAMAQLEKAFAEVAAKNGKPFFGGDTVGYVDLALGCNLHFLEAIRRLHGVALVDAGKTPLLAAWAERFVEVEAAKGVVPDADDAVEFARKVQARVAAAAASTAAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.078127 | 1.953507 | 1.537146 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0530400 | RBH | 6.533314 | 9.393306 | 5.010686 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38700 | RBH | 4.056641 | 5.954396 | 1.215784 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0530400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017880 | SBH | 0.0 | 3.343572 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018360 | RBH | 2.080694 | 0.0 | 2.406996 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017660 | SBH | 0.516216 | 8.552260 | 0.252772 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018290 | RBH | 1.958183 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018050 | SBH | 11.185562 | 0.0 | 14.731965 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0339800 | RBH | 69.7866705 | 14.608009 | 0.018298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017950 | SBH | 0.271785 | 0.0 | 3.047350 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0364100 | RBH | 109.275349 | 15.60672 | 0.0319825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017700 | SBH | 2.436012 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017530 | RBH | 5.192924 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018170 | RBH | 63.842964 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017740 | SBH | 3.705521 | 0.0 | 3.471716 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018260 | RBH | 3.956352 | 2.592840 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017890 | SBH | 1.660139 | 16.673845 | 4.585860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018060 | SBH | 0.486435 | 0.0 | 4.785773 |
