Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0018290 | OGI:10062680 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:23287837-23288966 | ||||||||
| Gene Symbol | GSTU30, OsGSTU30 | ||||||||||
| DNA seq | acgcactactagtcttctatagcatatacaaatattcacggttcgtgttgtgctccgatcaagtgctagctagctagcaaaagacaactcaagccaaaaccatctcagagcttcagagaggaagacaatggccggtggaggagatgagctgaagctgctggggatgtgggcgagcccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacgagtacgtcgaggaggatctcaagaacaagagcgagctgcttctcacctccaacccggtgcacaagaaggtacccgtgctcatccacaacggcaagcccgtctgcgagtcgcaggtcatcgtgcagtacatcgacgaggcgttccccgacgccggcgttcctctcctcccatccgacccctacgaccgtgccgtcgctcgcttctgggccgcctacatcgacgacaaggtaatcgacgaattgcCTcaacccaatcgtcttgaatttgcatcgaatcgaaaatgacgagatgaactgatgcgttgtgtgtgcatcgttgttgcagctgttgaagtcatggctgcaggcgtcgatgtgcaagacggagCaggagaaggcggcggcgatgaaggagacgttcgcggcggtggcgaacctggaggcggcgttcaaggagtgctccaaggggaagcccttcttcggcggcgacgccgtcgggtacgtggacgtcacgctcggcgccgtgatcgggtttgtgcgcgtcggtgaagccgtgcacgggatgaggctgttcgatgcgagccggagcccgctccttgacgcgtggctggaccgcttcgccgcgctggacgctgccaaggcggtgttgccggacaccggtaggctggccgagtacgccaagatgaagcaggcagagtgggcagcagctgccaccaactgagccagcatggccacgtctggtactctcgtggggagatgaagttggtgttggtgtgccacccgtaccgtacgtagctagtcctgtcacacgatgtgacgactgtgtgaactttgctactatacgcaataaaattgtgaagtcgttaagttttcgtaagtacacaccggcaacgtgtaatggaattatctctactggtcgtcctcc
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| CDS seq | atggccggtggaggagatgagctgaagctgctggggatgtgggcgagcccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacgagtacgtcgaggaggatctcaagaacaagagcgagctgcttctcacctccaacccggtgcacaagaaggtacccgtgctcatccacaacggcaagcccgtctgcgagtcgcaggtcatcgtgcagtacatcgacgaggcgttccccgacgccggcgttcctctcctcccatccgacccctacgaccgtgccgtcgctcgcttctgggccgcctacatcgacgacaagctgttgaagtcatggctgcaggcgtcgatgtgcaagacggagCaggagaaggcggcggcgatgaaggagacgttcgcggcggtggcgaacctggaggcggcgttcaaggagtgctccaaggggaagcccttcttcggcggcgacgccgtcgggtacgtggacgtcacgctcggcgccgtgatcgggtttgtgcgcgtcggtgaagccgtgcacgggatgaggctgttcgatgcgagccggagcccgctccttgacgcgtggctggaccgcttcgccgcgctggacgctgccaaggcggtgttgccggacaccggtaggctggccgagtacgccaagatgaagcaggcagagtgggcagcagctgccaccaactga
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| Protein seq | MAGGGDELKLLGMWASPFALRAKLALSFKGLSYEYVEEDLKNKSELLLTSNPVHKKVPVLIHNGKPVCESQVIVQYIDEAFPDAGVPLLPSDPYDRAVARFWAAYIDDKLLKSWLQASMCKTEQEKAAAMKETFAAVANLEAAFKECSKGKPFFGGDAVGYVDVTLGAVIGFVRVGEAVHGMRLFDASRSPLLDAWLDRFAALDAAKAVLPDTGRLAEYAKMKQAEWAAAATN |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0018290 | OsKeNa_10g0018290.01 | Chr10 | 23287837 | 23288939 | + | NAM | ||
| CDS seq | atggccggtggaggagatgagctgaagctgctggggatgtgggcgagcccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacgagtacgtcgaggaggatctcaagaacaagagcgagctgcttctcacctccaacccggtgcacaagaaggtacccgtgctcatccacaacggcaagcccgtctgcgagtcgcaggtcatcgtgcagtacatcgacgaggcgttccccgacgccggcgttcctctcctcccatccgacccctacgaccgtgccgtcgctcgcttctgggccgcctacatcgacgacaagctgttgaagtcatggctgcaggcgtcgatgtgcaagacggagCaggagaaggcggcggcgatgaaggagacgttcgcggcggtggcgaacctggaggcggcgttcaaggagtgctccaaggggaagcccttcttcggcggcgacgccgtcgggtacgtggacgtcacgctcggcgccgtgatcgggtttgtgcgcgtcggtgaagccgtgcacgggatgaggctgttcgatgcgagccggagcccgctccttgacgcgtggctggaccgcttcgccgcgctggacgctgccaaggcggtgttgccggacaccggtaggctggccgagtacgccaagatgaagcaggcagagtgggcagcagctgccaccaactga
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| Protein seq | MAGGGDELKLLGMWASPFALRAKLALSFKGLSYEYVEEDLKNKSELLLTSNPVHKKVPVLIHNGKPVCESQVIVQYIDEAFPDAGVPLLPSDPYDRAVARFWAAYIDDKLLKSWLQASMCKTEQEKAAAMKETFAAVANLEAAFKECSKGKPFFGGDAVGYVDVTLGAVIGFVRVGEAVHGMRLFDASRSPLLDAWLDRFAALDAAKAVLPDTGRLAEYAKMKQAEWAAAATN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0018290 | OsKeNa_10g0018290.02 | Chr10 | 23288727 | 23288966 | + | IsoSeq | ||
| CDS seq | gcaggcagagtgggcagcagctgccaccaactgagccagcatggccacgtctggtactctcgtggggagatgaagttggtgttggtgtgccacccgtaccgt |
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| Protein seq | AGRVGSSCHQLSQHGHVWYSRGEMKLVLVCHPYR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 9.005415 | 2.464998 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0528400 | SBH | 1.312273 | 0.404266 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38489 | SBH | 0.151580 | 0.155636 | 0.141495 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0528400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017880 | SBH | 0.0 | 3.343572 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018260 | RBH | 0.082561 | 0.000000 | 0.877274 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017660 | RBH | 0.516216 | 8.552260 | 0.252772 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018260 | SBH | 0.248896 | 0.589044 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0017990 | SBH | 1.284863 | 8.566697 | 6.633090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0339500 | SBH | 0 | 2.479635 | 0.031769 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017910 | RBH | 0.0 | 0.0 | 0.030000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0363900 | SBH | 0.0152215 | 2.799602 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017480 | RBH | 0.170150 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018120 | SBH | 10.529446 | 13.111764 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017670 | SBH | 0.0 | 0.0 | 0.228837 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018210 | SBH | 0.073061 | 6.561039 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017840 | SBH | 0.703231 | 0.859461 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018010 | SBH | 0.0 | 4.892385 | 2.368940 |
