Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0023980 | OGI:07071810 | 7/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:26541463-26542296 | ||||||||
| Gene Symbol | OSK27 | ||||||||||
| DNA seq | atggcggaggagaaggggaaggggaaggaggagggagagggctccgcgatggcgtcgaaggcggcggggattctggtggtgccgggtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaaggccgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcgtcaacctcatcccggcgaacacctcagccacagcctcgacctcaaggccatcaacatcgacctcaagcccatcaacatcgacctcagcctcacactctgcgactaggagggggagggggaggaggagacactga
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| CDS seq | atggcggaggagaaggggaaggggaaggaggagggagagggctccgcgatggcgtcgaaggcggcggggattctggtggtgccgggtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaaggccgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcgtcaacctcatcccggcgaacacctcagccacagcctcgacctcaaggccatcaacatcgacctcaagcccatcaacatcgacctcagcctcacactctgcgactaggagggggagggggaggaggagacactga
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| Protein seq | MAEEKGKGKEEGEGSAMASKAAGILVVPGAAGVGNALLEAFAKVAVEKKDEVATVSELVRKLVSEGVAEEVAVTEALEHPVFDSPEKVVPEVAEEEESGGRMITLKSLDGKTVKVKEASARLSETIGNLIDDGRRRGDETIPRLFVSYKALMKVIEYCDEHANNKADTDERKEELKNWDKAFIDKLDEDNILFVEVLAASNYLKITGLSKLTDQRFVDPFNTSNKTPDAEETRVNLIPANTSATASTSRPSTSTSSPSTSTSASHSATRRGRGRRRH |
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| Function | SKP1-like protein 13 [UniProtKB/Swiss-Prot:Q9M1X5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0023980 | OsKeNa_07g0023980.01 | Chr07 | 26541463 | 26542296 | + | NAM | ||
| CDS seq | atggcggaggagaaggggaaggggaaggaggagggagagggctccgcgatggcgtcgaaggcggcggggattctggtggtgccgggtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaaggccgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcgtcaacctcatcccggcgaacacctcagccacagcctcgacctcaaggccatcaacatcgacctcaagcccatcaacatcgacctcagcctcacactctgcgactaggagggggagggggaggaggagacactga
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| Protein seq | MAEEKGKGKEEGEGSAMASKAAGILVVPGAAGVGNALLEAFAKVAVEKKDEVATVSELVRKLVSEGVAEEVAVTEALEHPVFDSPEKVVPEVAEEEESGGRMITLKSLDGKTVKVKEASARLSETIGNLIDDGRRRGDETIPRLFVSYKALMKVIEYCDEHANNKADTDERKEELKNWDKAFIDKLDEDNILFVEVLAASNYLKITGLSKLTDQRFVDPFNTSNKTPDAEETRVNLIPANTSATASTSRPSTSTSSPSTSTSASHSATRRGRGRRRH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0625600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0625600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023910 | RBH | 0.0 | 0.0 | 0.793522 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023840 | RBH | 0.0 | 0.0 | 1.080416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023880 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0424700 | RBH | 0 | 0.01448 | 0.6647125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0435400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023640 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023800 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023660 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023590 | SBH | 0.0 | 0.0 | 1.019865 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023620 | SBH | 0.0 | 0.0 | 0.0 |
