Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0015660 | OGI:04043860 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:14284756-14289141 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttgTtttgcgaaagaatctttggacccataaaaagcagaatttgtgcttgtggaaattctcgagcgagcggacctgaaaacgaagacgaaagattttgccaaaaaTgcggagtagaatttgttgatctagataatgTttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctattttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggaatccttatgtgaggaattacaaagaaattttttcaacaaaatgtgaattaggAaggattggtcgatgaaatatgaatcgaagactgaatcttgatatacctcagaacagcaccttcttgttaccgcgagatgtattggccgctacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacTtgaaaaataaacgtattcgttcggttgcggatctgttacaagatcaattcggactggctcttggtcgtttacaacatgcggttcaaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagttgttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgtggacttactggatctttagctattcatgcgagaattgatcattggtggggatccgtagagagtccattttatgaaatatctgagaaagcaaagaaaaaaaaaagagagacaggggtttatttatcaccaaatagagatgagtattatatgatagcagcaggaaattcttgtccttgaatcggggtattcaggaagaacaggttgttcagctagataccgtcaagaattcctgactattgcatgggaacagattcatgttagaagtattttcctttccaatatttttctattggggttctctcattcctttattgagcataatgatgcgaatcgagctttaatgagttctaatatgcagcgccaagcagttccgctttctcggtccgagaagtgcattgttggaactggattggaacgccaaacaactctagattcgagggtttctgttatagccgaacgcgagggaaagatcatttctactaatagtcacaagatccttttatcaagtagtgggaagactataagtattcctttagttacccatcggcgctctaacaaaaaTacttgtatgcaccaaaaacctcgggttccgcggggtaaatccattaaaaaaggacaaaattttagcggagggggtgctacggttggtggggaacttgctttaggaaaaacgtattagtagcttatatgccatgggaaggttacaaTtttgaagacgcagtattaattagcgaacgtttggtatatgaggatatttatacTtcatctgatgtcaatatcctgttttgggatttcgattgaaataccctttatgggtgttttacgtagaaatactatagttgcttattttgacgacccacgatacaaaaaagataaaaagggttcaggaaTtgttaaatttagatataggaccctagaggacgaatataggactcgagagaaagactcagagaacgaatacgggagcccagaaaacgaatataggacccgagaggaagaatgtaaaaccctagaagacgaatataggactcgagaggaggagtatgaaaccctagaagatgaataTgggatcccagagaacgaatatgaaaccctagaagatgaatatggaatcctagaggacgaatataggactcgagaggaggaatccgaggacgaatatgggagtccagagaacaaatataggCcccgagaggataaatatggcactttagaggaagactcagaggacgaacatgggactttagaggaagactcagaggaagactcagaggacgaatatgggaacccggaggaagattccgtcttaaaaaagggggTtttgattgagcatcgaggaacaaaagaatttagtctaaaataccaaaaagaagtagatcagttttttttcattctccaagaactgcatatcttgccgagatcctcatccctaaaggtacttgacaatagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggtcgagtgaagagaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagaggcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaaggaatcaaaaaaaaggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaaggaaaagtattttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaaacacttttccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgttcgaacttgcttaggattgaattgggaacaagaagaaaaagaggaggctcgtgcttcccttgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatccactatttcgtattacatgaaaaaggtatgaataagcagaagtgcagactgtttccataataggttagatcgcaccaataccaattcctttattccaaggcgaagattcaacacttagccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgatggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaatcccaatggggtaaaagaatcgaatcctagaattcctattccaaaattttgggggctctttcgaaatttttcgggactcttaggtactattgcacctagtatatcgaatttttcttcatcttactatttactaacgtataatcagatccggttaaaaaagcatttgctccttgacaatttgaaacaaaacttcaaagtacttcaaggacttaaacactctttaataaatgaaaatcaaaggacttcaaatttcgatagtaacatcatgttggatccattccagttaaattggcactttctccctcatgattcttgggaagagacatcagcaaaaattcacctggacaatttatttgcgaaaatgtgtctatttaaatcgcacataaaaaatcaggtcaaattttcattgtaaatatagattcctttgttataagagcagctaagccttatttggccactacaggagcaactgttcatggtcattcattatggagaaatcctttacaaaggggataggttagttacgtttatatacgaaaaaagcgagatctagtgacataacgcaaggtcttccaaaaagtagaacaaatcttcgaagcgcgttcaattgattcattatcgccgaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcccaaagtcgtacctctttggttaataagatccaaaaggtttatcgatccaaggggtacagatccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttccgaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagagcgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataacaagggtttccctgaatacccaaagttcatatctgaagcaagttttcaagaaactgatcgagttttagcaaaagctgccttacgaggttattgattggttgaaaggcctgaaagaaaacgtagttctgggggggattatacctgttggtaccggattccaaaaatttgtgcaccgttacccacaagacaagaacctttatttcgaaattcaaaaaaaaactatttgcgtcggaaatgagagatattttgtttctccatacagaattagttcttctgattctgacgtaacaaacaatttctatgagacatcagaatcaccatttaccccatttatatga
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| CDS seq | atgaaatttgaaacgggtatacttgacgatgacgatatgaatcacTtgaaaaataaacgtattcgttcggttgcggatctgttacaagatcaattcggactggctcttggtcgtttacaacatgcgcaggaaattcttgtccttgaatcggggtattcaggaagaacaggttgttcagctagataccgtcaagaattcctgactattgcatgggaacagattcatgttagaagtattttcctttccaatatttttctattggggttctctcattcctttattgagcataatgatgcgaatcgagctttaatgagttctaatatgcagcgccaagcagttccgctttctcggtccgagaagtgcattgttggaactggattggaacgccaaacaactctagattcgaggttacccatcggcgctctaacaaaaaTacttgtatgcaccaaaaacctcgggttccgcggggtaaatccattaaaaaaggacaaaattttagcggagggggtgctacgaaatactatagttgcttattttgacgacccacgatacaaaaaagataaaaagggttcaggaaTtgttaaatttagatataggaccctagaggacgaatataggactcgagagaaagactcagagaacgaatacgggagcccagaaaacgaatataggacccgagaggaagaatgtaaaaccctagaagacgaatataggactcgagaggaggagtatgaaaccctagaagatgaataTgggatcccagagaacgaatatgaaaccctagaagatgaatatggaatcctagaggacgaatataggactcgagaggaggaatccgaggacgaatatgggagtccagagaacaaatataggCcccgagaggataaatatggcactttagaggaagactcagaggacgaacatgggactttagaggaagactcagaggaagactcagaggacgaatatgggaacccggaggaagattccgtcttaaaaaagggggTtttgattgagcatcgaggaacaaaagaatttagtctaaaataccaaaaagaagtagatcagttttttttcattctccaagaactgcatatcttgccgagatcctcatccctaaagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggtcgagtgaagagaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagaggcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaaggaatcaaaaaaaaggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaaggaaaatcgcgtatgaaatgaacgaagggagaaatttagcaaacacttttccacaggatctcttgcaggaagaggaacaaatcttcgaagcgcgttcaattgattcattatcgccgaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcccaaagtcgtacctctttggttaataagatccaaaagatccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttccgaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagagcgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataacaagggtttccctgaatacccaaagttcatatctgaagcaacaaaagctgccttacgaggttattgattggttgaaaggcctgaaagaaaacgtagttctgggggggattatacctgttggtaccggattccaaaaatttgtgcaccgttacccacaagacaagaacctttatttcgaaattcaaaaaaaaactatttgcgtcggaaatgagagatattttgtttctccatacagaattagttcttctgattctgacgtaacaaacaatttctatgagacatcagaatcaccatttaccccatttatatga
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| Protein seq | MKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAQEILVLESGYSGRTGCSARYRQEFLTIAWEQIHVRSIFLSNIFLLGFSHSFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTTLDSRLPIGALTKILVCTKNLGFRGVNPLKKDKILAEGVLRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDQFFFILQELHILPRSSSLKYYWSGYTTHKKYKKSAGWIGRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRKIGSMFSGKKFSRARKIAYEMNEGRNLANTFPQDLLQEEEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRTSLVNKIQKIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSSYLKQQKLPYEVIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDKNLYFEIQKKTICVGNERYFVSPYRISSSDSDVTNNFYETSESPFTPFI |
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| Function | DNA-directed RNA polymerase subunit beta'' [UniProtKB/Swiss-Prot:P0C509] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0015660 | OsKeNa_02g0015660.01 | Chr02 | 14284756 | 14289141 | + | NAM | ||
| CDS seq | atgaaatttgaaacgggtatacttgacgatgacgatatgaatcacTtgaaaaataaacgtattcgttcggttgcggatctgttacaagatcaattcggactggctcttggtcgtttacaacatgcgcaggaaattcttgtccttgaatcggggtattcaggaagaacaggttgttcagctagataccgtcaagaattcctgactattgcatgggaacagattcatgttagaagtattttcctttccaatatttttctattggggttctctcattcctttattgagcataatgatgcgaatcgagctttaatgagttctaatatgcagcgccaagcagttccgctttctcggtccgagaagtgcattgttggaactggattggaacgccaaacaactctagattcgaggttacccatcggcgctctaacaaaaaTacttgtatgcaccaaaaacctcgggttccgcggggtaaatccattaaaaaaggacaaaattttagcggagggggtgctacgaaatactatagttgcttattttgacgacccacgatacaaaaaagataaaaagggttcaggaaTtgttaaatttagatataggaccctagaggacgaatataggactcgagagaaagactcagagaacgaatacgggagcccagaaaacgaatataggacccgagaggaagaatgtaaaaccctagaagacgaatataggactcgagaggaggagtatgaaaccctagaagatgaataTgggatcccagagaacgaatatgaaaccctagaagatgaatatggaatcctagaggacgaatataggactcgagaggaggaatccgaggacgaatatgggagtccagagaacaaatataggCcccgagaggataaatatggcactttagaggaagactcagaggacgaacatgggactttagaggaagactcagaggaagactcagaggacgaatatgggaacccggaggaagattccgtcttaaaaaagggggTtttgattgagcatcgaggaacaaaagaatttagtctaaaataccaaaaagaagtagatcagttttttttcattctccaagaactgcatatcttgccgagatcctcatccctaaagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggtcgagtgaagagaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagaggcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaaggaatcaaaaaaaaggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaaggaaaatcgcgtatgaaatgaacgaagggagaaatttagcaaacacttttccacaggatctcttgcaggaagaggaacaaatcttcgaagcgcgttcaattgattcattatcgccgaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcccaaagtcgtacctctttggttaataagatccaaaagatccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttccgaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagagcgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataacaagggtttccctgaatacccaaagttcatatctgaagcaacaaaagctgccttacgaggttattgattggttgaaaggcctgaaagaaaacgtagttctgggggggattatacctgttggtaccggattccaaaaatttgtgcaccgttacccacaagacaagaacctttatttcgaaattcaaaaaaaaactatttgcgtcggaaatgagagatattttgtttctccatacagaattagttcttctgattctgacgtaacaaacaatttctatgagacatcagaatcaccatttaccccatttatatga
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| Protein seq | MKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAQEILVLESGYSGRTGCSARYRQEFLTIAWEQIHVRSIFLSNIFLLGFSHSFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTTLDSRLPIGALTKILVCTKNLGFRGVNPLKKDKILAEGVLRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDQFFFILQELHILPRSSSLKYYWSGYTTHKKYKKSAGWIGRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRKIGSMFSGKKFSRARKIAYEMNEGRNLANTFPQDLLQEEEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRTSLVNKIQKIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSSYLKQQKLPYEVIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDKNLYFEIQKKTICVGNERYFVSPYRISSSDSDVTNNFYETSESPFTPFI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0015660 | OsKeNa_02g0015660.02 | Chr02 | 14286817 | 14289013 | + | IsoSeq | ||
| CDS seq | actttagaggaagactcagaggacgaacatgggactttagaggaagactcagaggaagactcagaggacgaatatgggaacccggaggaagattccgtcttaaaaaagggggTtttgattgagcatcgaggaacaaaagaatttagtctaaaataccaaaaagaagtagatcagttttttttcattctccaagaactgcatatcttgccgagatcctcatccctaaaggtacttgacaatagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggtc
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| Protein seq | TLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDQFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.302181 | 4.372070 | 17.614861 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015530 | RBH | 4.694625 | 7.814671 | 28.027016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015650 | RBH | 10.978106 | 19.987053 | 14.325867 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015570 | RBH | 4.625588 | 5.370242 | 14.354862 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015420 | RBH | 1.941743 | 0.481139 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025340 | SBH | 569.773132 | 16.176212 | 333.529907 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017770 | SBH | 6.429429 | 89.839859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0020040 | RBH | 0.259193 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
