Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0034950 | OGI:01098260 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:32928549-32931006 | ||||||||
| Gene Symbol | OsFbox041, OsFbox41, Os_F0730 | ||||||||||
| DNA seq | atggacgagctcgattgcggtgagcaccaactcaacggcaccaccagtgtggagatccaccttgaggatggccctcgagtatgtgcttgtactgcgttggcatcagctctgagattgccaacgctccacccactgcccttgcaccctgcccaagtgccaatcgaggttggtggcgtggaaggtggcgatggcggtaaggttgaagctggcgccgttgaggacgtcacaaaggaagttaaaggcgaagaggagcacgaagaggtggcaaacggtgacaaagagagcgtagtggatcccttcctagatgttgaggtaggaggtgactaccgctattgaggcccgcagtgtcgacacgtatagcacccacaggaacgtcactactgtttctgttgcctctgcccacaccaccactgccaccgctgcttgctctgctgcttgctggggaaaagatagagaaggagaagagggatgaaaagtgggtcctactttttatatatttttcctagtcatttacatgtgggcttcacatgtatttttgtgactgggctgacacgtcaacatagtggactaagtcaatatgccatgtcagcaaaaatacactctaaaactattgagggagtcaaattgtatgggttttaatagtttgaggggggggggggtgtctagatatccgatattacggttgggggacacgaatcagattggagctatatttgagggagtcaaaatgaacttagatccaataatctaataggcccaaccgaatgggccgctacaaacccatcgagaacaagtgaacaatgggctcaagtgccaagcgaactttccttatctttcttgcggcacaagcccatcatgaacaatatgttcaagtgggccaaacgagccatccgccatcctcccttgcttgaagtatactccctctgtctaataatattaaaatctagaactagatggtatgtttcatggtacaatgaatctggatagatgtgaatttggacagatgtatattcagatttattgtactatgaaacatctcaattcaatcttaggttagaatattatgagacggagggagcagtgctcctccccatcctctcttccttgcagtattaataccctccacttccgttccgtggcttccagaagcaaaaaaaaaagggaatcaaacttgtaacagacaccgtcgcgtgagcgtctcgtgccattcgccacccagtcgccaacctccccttcccttcccctcccctcccctcccctcccgtctcccatggctgcctctccgtcatgggcgaacctcatcggcgccctcgtgcgcgagatcgccacccgcctcccgtgcaagttcgatcgcgtgcacttcgccgccgtctgccgatcatggcgcgagtccctcgagcagctcgctcccctgccccggtctcccgctctgccgtttctcatcctaccgctcgctgaggggcctgccgtctcctgcatcctgagcgactacgccacccacccagccgtcgtcctggattgggtgcggtacgctcgctacatcggcgcgtacgacgatggctgggtcttcctctccactgctccacctcaaggtccccaacaccacctcctcctcgatacctaccaattcgatcgtcacatcaacctccccgacgcgttcatcgagcaccacaccggagctctgttgccgttgtccatcgtcgccgccgccctctcattctatccagacgtcgacggacgatgcgtcttcgccggaatcatcaatgtcggtcccgtcccacaaggccggccaatgattgcgttctggcgcatcttcgatccggtggtccctggcttgttcagcggcccactgaacccgcgcagggaatgggatgcggtggacgtcgtgcaccaccatggagccttccatttcctcacccaaggggagcacatcattgtggccaaaccggagttccactattggtgtccggtcccggctatgcctcaagtcgactgggagtttcgctgcttcccatcgaacaggcgcggctacaaccagcagcacgtcaaggcgcgctacctagtgaagtcccgcgaagacctgctcatggtcgtgaggtgctcccctcatcctggacagccgacgtcggcgttcaaggtgttccggatggtgccaagccagcgggctcggtgtcggcagtacatttggcagagggtgccctcactgggtggccggatgctgttcgtcgggcgtggctgctctagatcctacgaggcggatcactaccccgccggcatcgcgggcggcatctacttcttcgatgatgggttcatccaggacccggtgatgctgcagcaaccgcagtacagctgcagcgactgcgggaaatggacggaatcacctggccccatggtggagcgctgcttcccggcacaaggcgcatcgaactactccccccaaggttggcgtctcccttga
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| CDS seq | atggacgagctcgattgcggtgagcaccaactcaacggcaccaccagtgtggagatccaccttgaggatggccctcgagtatgtgcttgtactgcgttggcatcagctctgagattgccaacgctccacccactgcccttgcaccctgcccaagtgccaatcgaggttggtggcgtggaaggtggcgatggcggtaaggttgaagctggcgccgttgaggacgtcacaaaggaagttaaaggcgaagaggagcacgaagaggtggcaaacggtgacaaagagagcgtagtggatcccttcctagatgttgagacaccgtcgcgtgagcgtctcgtgccattcgccacccagtcgccaacctccccttcccttcccctcccctcccctcccctcccgtctcccatggctgcctctccgtcatgggcgaacctcatcggcgccctcgtgcgcgagatcgccacccgcctcccgtgcaagttcgatcgcgtgcacttcgccgccgtctgccgatcatggcgcgagtccctcgagcagctcgctcccctgccccggtctcccgctctgccgtttctcatcctaccgctcgctgaggggcctgccgtctcctgcatcctgagcgactacgccacccacccagccgtcgtcctggattgggtgcggtacgctcgctacatcggcgcgtacgacgatggctgggtcttcctctccactgctccacctcaaggtccccaacaccacctcctcctcgatacctaccaattcgatcgtcacatcaacctccccgacgcgttcatcgagcaccacaccggagctctgttgccgttgtccatcgtcgccgccgccctctcattctatccagacgtcgacggacgatgcgtcttcgccggaatcatcaatgtcggtcccgtcccacaaggccggccaatgattgcgttctggcgcatcttcgatccggtggtccctggcttgttcagcggcccactgaacccgcgcagggaatgggatgcggtggacgtcgtgcaccaccatggagccttccatttcctcacccaaggggagcacatcattgtggccaaaccggagttccactattggtgtccggtcccggctatgcctcaagtcgactgggagtttcgctgcttcccatcgaacaggcgcggctacaaccagcagcacgtcaaggcgcgctacctagtgaagtcccgcgaagacctgctcatggtcgtgaggtgctcccctcatcctggacagccgacgtcggcgttcaaggtgttccggatggtgccaagccagcgggctcggtgtcggcagtacatttggcagagggtgccctcactgggtggccggatgctgttcgtcgggcgtggctgctctagatcctacgaggcggatcactaccccgccggcatcgcgggcggcatctacttcttcgatgatgggttcatccaggacccggtgatgctgcagcaaccgcagtacagctgcagcgactgcgggaaatggacggaatcacctggccccatggtggagcgctgcttcccggcacaaggcgcatcgaactactccccccaaggttggcgtctcccttga
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| Protein seq | MDELDCGEHQLNGTTSVEIHLEDGPRVCACTALASALRLPTLHPLPLHPAQVPIEVGGVEGGDGGKVEAGAVEDVTKEVKGEEEHEEVANGDKESVVDPFLDVETPSRERLVPFATQSPTSPSLPLPSPPLPSPMAASPSWANLIGALVREIATRLPCKFDRVHFAAVCRSWRESLEQLAPLPRSPALPFLILPLAEGPAVSCILSDYATHPAVVLDWVRYARYIGAYDDGWVFLSTAPPQGPQHHLLLDTYQFDRHINLPDAFIEHHTGALLPLSIVAAALSFYPDVDGRCVFAGIINVGPVPQGRPMIAFWRIFDPVVPGLFSGPLNPRREWDAVDVVHHHGAFHFLTQGEHIIVAKPEFHYWCPVPAMPQVDWEFRCFPSNRRGYNQQHVKARYLVKSREDLLMVVRCSPHPGQPTSAFKVFRMVPSQRARCRQYIWQRVPSLGGRMLFVGRGCSRSYEADHYPAGIAGGIYFFDDGFIQDPVMLQQPQYSCSDCGKWTESPGPMVERCFPAQGASNYSPQGWRLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034950 | OsKeNa_01g0034950.01 | Chr01 | 32928549 | 32931006 | + | NAM | ||
| CDS seq | atggacgagctcgattgcggtgagcaccaactcaacggcaccaccagtgtggagatccaccttgaggatggccctcgagtatgtgcttgtactgcgttggcatcagctctgagattgccaacgctccacccactgcccttgcaccctgcccaagtgccaatcgaggttggtggcgtggaaggtggcgatggcggtaaggttgaagctggcgccgttgaggacgtcacaaaggaagttaaaggcgaagaggagcacgaagaggtggcaaacggtgacaaagagagcgtagtggatcccttcctagatgttgagacaccgtcgcgtgagcgtctcgtgccattcgccacccagtcgccaacctccccttcccttcccctcccctcccctcccctcccgtctcccatggctgcctctccgtcatgggcgaacctcatcggcgccctcgtgcgcgagatcgccacccgcctcccgtgcaagttcgatcgcgtgcacttcgccgccgtctgccgatcatggcgcgagtccctcgagcagctcgctcccctgccccggtctcccgctctgccgtttctcatcctaccgctcgctgaggggcctgccgtctcctgcatcctgagcgactacgccacccacccagccgtcgtcctggattgggtgcggtacgctcgctacatcggcgcgtacgacgatggctgggtcttcctctccactgctccacctcaaggtccccaacaccacctcctcctcgatacctaccaattcgatcgtcacatcaacctccccgacgcgttcatcgagcaccacaccggagctctgttgccgttgtccatcgtcgccgccgccctctcattctatccagacgtcgacggacgatgcgtcttcgccggaatcatcaatgtcggtcccgtcccacaaggccggccaatgattgcgttctggcgcatcttcgatccggtggtccctggcttgttcagcggcccactgaacccgcgcagggaatgggatgcggtggacgtcgtgcaccaccatggagccttccatttcctcacccaaggggagcacatcattgtggccaaaccggagttccactattggtgtccggtcccggctatgcctcaagtcgactgggagtttcgctgcttcccatcgaacaggcgcggctacaaccagcagcacgtcaaggcgcgctacctagtgaagtcccgcgaagacctgctcatggtcgtgaggtgctcccctcatcctggacagccgacgtcggcgttcaaggtgttccggatggtgccaagccagcgggctcggtgtcggcagtacatttggcagagggtgccctcactgggtggccggatgctgttcgtcgggcgtggctgctctagatcctacgaggcggatcactaccccgccggcatcgcgggcggcatctacttcttcgatgatgggttcatccaggacccggtgatgctgcagcaaccgcagtacagctgcagcgactgcgggaaatggacggaatcacctggccccatggtggagcgctgcttcccggcacaaggcgcatcgaactactccccccaaggttggcgtctcccttga
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| Protein seq | MDELDCGEHQLNGTTSVEIHLEDGPRVCACTALASALRLPTLHPLPLHPAQVPIEVGGVEGGDGGKVEAGAVEDVTKEVKGEEEHEEVANGDKESVVDPFLDVETPSRERLVPFATQSPTSPSLPLPSPPLPSPMAASPSWANLIGALVREIATRLPCKFDRVHFAAVCRSWRESLEQLAPLPRSPALPFLILPLAEGPAVSCILSDYATHPAVVLDWVRYARYIGAYDDGWVFLSTAPPQGPQHHLLLDTYQFDRHINLPDAFIEHHTGALLPLSIVAAALSFYPDVDGRCVFAGIINVGPVPQGRPMIAFWRIFDPVVPGLFSGPLNPRREWDAVDVVHHHGAFHFLTQGEHIIVAKPEFHYWCPVPAMPQVDWEFRCFPSNRRGYNQQHVKARYLVKSREDLLMVVRCSPHPGQPTSAFKVFRMVPSQRARCRQYIWQRVPSLGGRMLFVGRGCSRSYEADHYPAGIAGGIYFFDDGFIQDPVMLQQPQYSCSDCGKWTESPGPMVERCFPAQGASNYSPQGWRLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0774400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g56710 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0774400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035440 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035340 | SBH | 0.0 | 0.406390 | 0.159677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034680 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034430 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0541500 | RBH | 0.0094655 | 0.007567 | 0.0980435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0537800 | RBH | 0.0115935 | 0.0274685 | 0.1711525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034330 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034390 | RBH | 0.0 | 1.900023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034970 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034630 | RBH | 0.0 | 0.0 | 0.0 |
