Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0030700 | OGI:01088920 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:29643261-29648933 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaggccgctaatctgacaggaaacccagatcgcctgattcgctgggggtggggcgacgaaacttgcgcgatctcccctctcctctcctccgctcgaatctgcggtacgcacgcctccctcctcctcctcctcctcactccttccggccccgatcctatagctcctccgctcgccgcggggatctgcctacgacgaggcccggcacccccgccgccgccggatcgtgatttggcgcttcagacccgtgcgtagcgtgtaggatcaattggcgctccacgttccccgatgttgccgaattttcagagtttgttgggtagattgacccccggtacctccactgtggaggtatgcagagctgcccgtgcgaggagatcgggtttgtcgattagtgttctgtcgagagagctaggactaggatcttcgtagtgttgttgtttaagaagtgatacagtacaaagctcgtttctgcctcagttcttctagggagcttacatgtaatgatcaatgtgtctgaaacatgattttttttttcagagatgtagggttggtttttggactagaaagggttctggtgaagtacatatgatccaattggcgatgttctatcactgccttttatgtttttactgcttactagaatagtagctcatggagctagatccttctagtatttccagaaaattggaacaacataatctttctagagttaatcttttgctaattcgaatagcaggatagtgtttgcctatttggcatatctactaactataaatttcaccttgtagttgatatcagctttagctttgtcagcatctgattgattttagattggcaaagtatctggcctttgttgctggtaacttaggaaatatagaagtgacagttaatgccatgaatttgttgttttaatttctaatctaaatcgcaaaactaaaagagaagataagtatgcggccagtgaagaaagggtttaatggtgatgcataccccatttatctagggaacttgagaaaacagatacacgacagattgtccatagaatattcttctgagtatattttattgattcaattacttacctacagcaggcttcttctacaatctcaaacatggttgttgcaaatggtaatgtcgacacggaggaaggaactcttgagattgggatgggtatggatcttctgcttgattcacaataaccatatatggactgagtctagcttgtaagtagcctagtattgatattgtcgaactactcacactttgtaagtttttcttttaaaaatgcagagtacaggacagtctctggagttgctggtcctctagtcattcttgataaagtgaaggtaatcatatcttgtgatggctatttcatattgttttacatgcaaatataattttgattatttcagatcacattcacattccatataatgtgttggtatttcagggtcctaaataccaagaaattgtcaatatacgattaggagatggcacaactaggcgtggtcaagtgcttgaagtcgatggggagaaagctgttgttcaggtatgtacatatttgtttcatagtggcaataaataattaagatagcatgcattcttttaacatgttgccaattcattcgtgtggttatattgttattaaaaaaagttgattccttcttcatcacttattaatataactgtttttcaaaattctattagtatattatgacactttgattggaaagcagatggtgtacactgtttatgcaatcttttaatcattttacagataattagctgaattgcctgtattttgtcagaaccatcttagatggcagtgatacaagtatgtgatgcctaacacaaatattaagtttacaatttttatatttcttatggtagtataagcatcaccgagcagttgtcttcgtctttacttttgtcttcaggttgcctcaaacttttgagagtaatgtgaacgtcagtctagatgttattgtgcagttgttacctacctctctttcactcatgaaacttttgaaatcactggcaggttttcgaaggaacatctggtattgacaacaaatacacaactgtacaattcaccggtgaggtaatattctttttccccgtgaatttgtgctagtatgtagtgtcactgtttaaaatagtgaccaggatctctggcattcactaaataaagttgtcaatccttggattagaaaccggctggccccccaccattagccattggcttgttcccacatacagtgttttagtcattgaaattttcgaagtgattcactctgaattttgttcattctactttcctcgtgaacttttttcaggttctaaaaactccagtgtcactggatatgcttggacgtgtcttcaatggttctgggaaacctatagataatggcccaccgattttaccagaggcttacttggatatttctggtaggtgctagctgcttttgattattcataagatttgattatggtgtaaatcaaatgcttagattttgacatcgggtttgctggtgcaggaagttctatcaatcccagtgaacgaacataccctgaagaaatgattcagactgggatatctacaattgatgttatgaattctattgcccgtggtcagaagatccctctgttttccgctgctggtctcccacacaatgaaattgccgctcagatttgccgtcaggctggtctggtaaagtgtttagagaagagtgacaatatcttggaggtatttttgtctaaactacataatattcatcatacctaactggagtatcatttccatgttgcattctgggtactgtagcaagttataggcattacttcttacttagttcttgcagtaagtagccatagataattgacaaaaagcttgtgatctttgtttctaatttataagaagtgactaaatatatttgatgcatacttagtttgtcctacatggtgaagctagctacaaaaagattgttatcagtcattgcaatttagtgcagttttctattctgttattgctgtatgctgaataacattttgacattcacacttcttccttaatgttatctatctaatataacaatttattatagagttctgaggatgaaaattttgcgattgtctttgctgctatgggagtaaacatggagacagcacaatttttcaagcgtgattttgaggaaaatggttcaatggagagagttaccttatttcttaatctggtatatctgcattacctttgttctttcttttccttcactatgctgctctaaggaatttgcaagatctataacttactccttgattttgtattttttgttcataggcaaatgatccaactatcgagcgtattatcaccccaagaattgctctcaccacagcagaatacttggcatatgagtgcgggaagcatgttcttgtcatcctgactgacatgagctcatatgccgatgcacttcgtgaagtaagggcctttatcttgctgtatgctatttcctagtgtttacattagaaacatggtgggaattctctgctatcactttgagcaaaaatggatgttttgaaagatgataattctgaaaaatgttgtcttgccttacctgtttgaagggggaaaacgagcacaacataggtttatacagagaacctagatggttagatctaagcaagttatgatctgttgtttgttgggctctagactattttgtctgtcatcgatgatcggtagctagctatcgtataattacattaacacagatacagagttattctattcactattgcaggtctgcagctatactagttatatgctttaaataacaactcgttgtaaatttcgattcagaaatattggtttgagctaatttgaataattaaataatattgtattgaataaatgctttaatattgtttttctacatatgcttgctcctttttttttttttgaaatctagtccttttaataccacggtttatgctgatttcttaagtattatatcatccaagtcacctctacttaccttttctctgtctttcctcacatcaggtttctgcagctcgagaggaagtacctggacggcgtggttatcctggttatatgtatactgatttggcaactatctatgagcgtgctggtcgaatagaaggaagaaaaggatcaattacgcagatacccattttaaccatgcctaatgatggttagttatttaaatgtgcttacattttatgataaatcattttgcgaacttgcactttttccttttttaatttgaagtatgtatgttaattgcacagaaaaacatagtgaatcagttttattaatagaataaatgttacatggataactgatattagatgctgccggcaactttctgactcattaagtcgtgctgttgtagatattacacatccaactcctgatcttactggttatatcactgagggacagatctacattgacaggcaactacataatcgacaggtattccacattttcacagtttcctgctaaactttgtttgatgacttctaaaccgaaaatttggattcctgattacaacaaaagaacaagagaagacttaattagctatttatagtaaaagcataaatagttggcatatcaaaagttctctctgatcttattgctgatttcaatttggcagatctatccaccgattaatgtccttccttcactctcccggctcatgaaggtaaggtttttggcaataaagaaagctgccgcactctacatcctactttagagtattgcagggtctgacatcgtcaatataaggttgataatttgcttataacttgaccggatctcttgcagagtgctattggtgaaggcatgactcgcagggatcattctgatgtctcgaaccaggtcggttgggcgttcatagcctatgttctgcacaaactaccttaaccgagtatatatatggagtatttactcggatgtgtttgtttcagctgtatgccaattacgccataggcaaggacgtacaggcgatgaaggcagtggttggagaggaagcgttgtcatcagaggacctggtaaccctcatgcatgacctgacactgttattcttaaattccttaattattttaagttttaacctcctaatcaactgatctatgaaaaaaaatgacagctgtacctcgagtttcttgacaagttcgagcggaagttcgtgacacaaggagcatatgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactgatctgcaaatggtcgtgtgtaataagaaaaaaaaccaccccggactcccacttcttctctttcatttttgccaccaatgcattcattattttttgtgtaaaaaacacgaattatctagtgatgtgggcttccatcattgttgtcccaagcacaccatgtatcatatttatcttcttttttggaagaaaatgtattattttcttgccgtggaaaaatgaataagtgaggacgagtgagctagggatttggttaatgtaagaacacaatgaaataagccatttgcctcatggttttcgcctgtcaattgagtttcagaccctc
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| CDS seq | atggttgttgcaaatggtaatgtcgacacggaggaaggaactcttgagattgggatggagtacaggacagtctctggagttgctggtcctctagtcattcttgataaagtgaagggtcctaaataccaagaaattgtcaatatacgattaggagatggcacaactaggcgtggtcaagtgcttgaagtcgatggggagaaagctgttgttcaggttttcgaaggaacatctggtattgacaacaaatacacaactgtacaattcaccggtgaggttctaaaaactccagtgtcactggatatgcttggacgtgtcttcaatggttctgggaaacctatagataatggcccaccgattttaccagaggcttacttggatatttctggaagttctatcaatcccagtgaacgaacataccctgaagaaatgattcagactgggatatctacaattgatgttatgaattctattgcccgtggtcagaagatccctctgttttccgctgctggtctcccacacaatgaaattgccgctcagatttgccgtcaggctggtctggtaaagtgtttagagaagagtgacaatatcttggagagttctgaggatgaaaattttgcgattgtctttgctgctatgggagtaaacatggagacagcacaatttttcaagcgtgattttgaggaaaatggttcaatggagagagttaccttatttcttaatctggcaaatgatccaactatcgagcgtattatcaccccaagaattgctctcaccacagcagaatacttggcatatgagtgcgggaagcatgttcttgtcatcctgactgacatgagctcatatgccgatgcacttcgtgaagtttctgcagctcgagaggaagtacctggacggcgtggttatcctggttatatgtatactgatttggcaactatctatgagcgtgctggtcgaatagaaggaagaaaaggatcaattacgcagatacccattttaaccatgcctaatgatgatattacacatccaactcctgatcttactggttatatcactgagggacagatctacattgacaggcaactacataatcgacagatctatccaccgattaatgtccttccttcactctcccggctcatgaagagtgctattggtgaaggcatgactcgcagggatcattctgatgtctcgaaccagctgtatgccaattacgccataggcaaggacgtacaggcgatgaaggcagtggttggagaggaagcgttgtcatcagaggacctgctgtacctcgagtttcttgacaagttcgagcggaagttcgtgacacaaggagcatatgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactga
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| Protein seq | MVVANGNVDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKCLEKSDNILESSEDENFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWSLLRIFPRELLHRIPAKTLDQYYSRDASH |
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| Function | V-type proton ATPase subunit B2 [UniProtKB/Swiss-Prot:Q9SZN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0030700 | OsKeNa_01g0030700.01 | Chr01 | 29643261 | 29648933 | + | NAM | ||
| CDS seq | atggttgttgcaaatggtaatgtcgacacggaggaaggaactcttgagattgggatggagtacaggacagtctctggagttgctggtcctctagtcattcttgataaagtgaagggtcctaaataccaagaaattgtcaatatacgattaggagatggcacaactaggcgtggtcaagtgcttgaagtcgatggggagaaagctgttgttcaggttttcgaaggaacatctggtattgacaacaaatacacaactgtacaattcaccggtgaggttctaaaaactccagtgtcactggatatgcttggacgtgtcttcaatggttctgggaaacctatagataatggcccaccgattttaccagaggcttacttggatatttctggaagttctatcaatcccagtgaacgaacataccctgaagaaatgattcagactgggatatctacaattgatgttatgaattctattgcccgtggtcagaagatccctctgttttccgctgctggtctcccacacaatgaaattgccgctcagatttgccgtcaggctggtctggtaaagtgtttagagaagagtgacaatatcttggagagttctgaggatgaaaattttgcgattgtctttgctgctatgggagtaaacatggagacagcacaatttttcaagcgtgattttgaggaaaatggttcaatggagagagttaccttatttcttaatctggcaaatgatccaactatcgagcgtattatcaccccaagaattgctctcaccacagcagaatacttggcatatgagtgcgggaagcatgttcttgtcatcctgactgacatgagctcatatgccgatgcacttcgtgaagtttctgcagctcgagaggaagtacctggacggcgtggttatcctggttatatgtatactgatttggcaactatctatgagcgtgctggtcgaatagaaggaagaaaaggatcaattacgcagatacccattttaaccatgcctaatgatgatattacacatccaactcctgatcttactggttatatcactgagggacagatctacattgacaggcaactacataatcgacagatctatccaccgattaatgtccttccttcactctcccggctcatgaagagtgctattggtgaaggcatgactcgcagggatcattctgatgtctcgaaccagctgtatgccaattacgccataggcaaggacgtacaggcgatgaaggcagtggttggagaggaagcgttgtcatcagaggacctgctgtacctcgagtttcttgacaagttcgagcggaagttcgtgacacaaggagcatatgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactga
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| Protein seq | MVVANGNVDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKCLEKSDNILESSEDENFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWSLLRIFPRELLHRIPAKTLDQYYSRDASH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0030700 | OsKeNa_01g0030700.02 | Chr01 | 29643398 | 29648914 | + | IsoSeq | ||
| CDS seq | atgacacacgcaacatcttccagtcgcttgacctcgcctggtcactactgcgcatctttccccgagagctgcttcaccgtataccagcgaaaacccttgaccagtattatagccgtgatgcctcccactgatctgcaaatggtcgtgtgtaataagaaaaaaaaccaccccggactcccacttcttctctttcatttttgccaccaatgcattcattattttttgtgtaaaaaacacgaattatctagtgatgtgggcttccatcattgttgtcccaagcacaccatgtatcatatttatcttcttttttggaagaaaatgtattattttcttgccgtggaa
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| Protein seq | MTHATSSSRLTSPGHYCASFPESCFTVYQRKPLTSIIAVMPPTDLQMVVCNKKKNHPGLPLLLFHFCHQCIHYFLCKKHELSSDVGFHHCCPKHTMYHIYLLFWKKMYYFLAVE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr01 | 29643261 | 29644348 | + | OsKeNa_01g0030700.01 | OsKeNa_01g0030700.01,OsKeNa_01g0030700.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.403922 | 3.985433 | 4.432302 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0711000 | RBH | 2.772010 | 3.172175 | 10.869291 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51380 | RBH | 1.832921 | 2.216406 | 2.974657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0711000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031100 | RBH | 1.220359 | 15.864098 | 13.401420 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026000 | SBH | 1.945621 | 52.567280 | 31.379612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031090 | RBH | 3.824232 | 36.584965 | 22.715809 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030350 | RBH | 0.457116 | 2.240263 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030020 | RBH | 9.316141 | 46.411747 | 38.320183 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0488100 | RBH | 11.285784 | 9.9867585 | 16.1914195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029740 | RBH | 0.372127 | 4.582391 | 3.887117 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0479900 | RBH | 13.5264485 | 8.0392915 | 17.881671 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029980 | RBH | 0.470789 | 0.546326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029930 | RBH | 0.739894 | 20.281160 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030210 | RBH | 5.846440 | 13.402053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030380 | RBH | 0.858096 | 4.257948 | 2.367745 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030150 | RBH | 0.324961 | 17.225271 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030620 | RBH | 1.274035 | 20.857355 | 6.805965 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030300 | RBH | 2.305910 | 54.914734 | 19.325119 |
