Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0000870 | OGI:01001850 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:635179-635909 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcgtgtgtttgtgtgacagagaaagtaatggagagccagagggtggtggtggtggtggaggacgtgggcgccgcccgcgcggcgctgcagtgggccgtgcgcaacttcatccgcgccggcgactgcatcacgctgctgcacgtctgcccgccggcgaggtcgcggcggaggcggcgcagcctacgcctcggcggcttccagctcgccctcgccttcagggagctctgcaacggcatcgcggaggtaaaccaatcaaccaatcaatcaatcaatggtggtagttgggtcaactcaaaacaaagaaagaaagaagcaattaatcatcttgttgaattgtgaaatggtatgcaggcgaaggtggagatagtggttcgggagggggaggtcggggagacggtggtggcgacggtgaaccagctcgccgccaccacgctcgtcgtcggcctccacgacaagagcttcctctacaggtacctctactctaactctaactgtaacatcaaaatgattcctcaactcaactcaactcaactcaactgaattctcttgagatatactgaacttgaactgaactgaattgaaattttgcttttgcgtcaggtcgacgaacccgtacgagcgaatgaggagggttgggtgcagggttcttggcatcaggcagcacgccacggcacgggacggttccttcaacgccgagctcacccaaatcgagaccatcaatttgcagtaa
More
|
||||||||||
| CDS seq | atggagagccagagggtggtggtggtggtggaggacgtgggcgccgcccgcgcggcgctgcagtgggccgtgcgcaacttcatccgcgccggcgactgcatcacgctgctgcacgtctgcccgccggcgaggtcgcggcggaggcggcgcagcctacgcctcggcggcttccagctcgccctcgccttcagggagctctgcaacggcatcgcggaggcgaaggtggagatagtggttcgggagggggaggtcggggagacggtggtggcgacggtgaaccagctcgccgccaccacgctcgtcgtcggcctccacgacaagagcttcctctacaggtcgacgaacccgtacgagcgaatgaggagggttgggtgcagggttcttggcatcaggcagcacgccacggcacgggacggttccttcaacgccgagctcacccaaatcgagaccatcaatttgcagtaa
More
|
||||||||||
| Protein seq | MESQRVVVVVEDVGAARAALQWAVRNFIRAGDCITLLHVCPPARSRRRRRSLRLGGFQLALAFRELCNGIAEAKVEIVVREGEVGETVVATVNQLAATTLVVGLHDKSFLYRSTNPYERMRRVGCRVLGIRQHATARDGSFNAELTQIETINLQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0000870 | OsKeNa_01g0000870.01 | Chr01 | 635179 | 635909 | + | NAM | ||
| CDS seq | atggagagccagagggtggtggtggtggtggaggacgtgggcgccgcccgcgcggcgctgcagtgggccgtgcgcaacttcatccgcgccggcgactgcatcacgctgctgcacgtctgcccgccggcgaggtcgcggcggaggcggcgcagcctacgcctcggcggcttccagctcgccctcgccttcagggagctctgcaacggcatcgcggaggcgaaggtggagatagtggttcgggagggggaggtcggggagacggtggtggcgacggtgaaccagctcgccgccaccacgctcgtcgtcggcctccacgacaagagcttcctctacaggtcgacgaacccgtacgagcgaatgaggagggttgggtgcagggttcttggcatcaggcagcacgccacggcacgggacggttccttcaacgccgagctcacccaaatcgagaccatcaatttgcagtaa
More
|
|||||||
| Protein seq | MESQRVVVVVEDVGAARAALQWAVRNFIRAGDCITLLHVCPPARSRRRRRSLRLGGFQLALAFRELCNGIAEAKVEIVVREGEVGETVVATVNQLAATTLVVGLHDKSFLYRSTNPYERMRRVGCRVLGIRQHATARDGSFNAELTQIETINLQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.289999 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0875300 | SBH | 0.0 | 0.000000 | 2.879536 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000880 | RBH | 0.336359 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000870 | RBH | 0.0 | 12.969554 | 0.942402 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000860 | RBH | 0.0 | 0.000000 | 1.352651 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0009400 | RBH | 1.2387675 | 1.350367 | 0.6298665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000850 | RBH | 0.0 | 0.0 | 0.138043 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0011200 | RBH | 2.527411 | 1.0717795 | 0.789916 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0000870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000900 | RBH | 0.392259 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000870 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000870 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000850 | RBH | 0.000000 | 9.926299 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000860 | RBH | 0.0 | 1.529297 | 1.343564 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000820 | RBH | 0.0 | 14.992640 | 0.000000 |
