Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_08g0003260 | OGI:08008040 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr08:3066487-3068647 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATACAATTCCCCAAATCGCTAGTACCTACATGTGATAAGTAAAATGCACTTCATCAATCCTTCCATACAGTCTTGATATGTATTCATGCACCGATATGTACTCGAGGGAATGTGTATATTACTTGTCACCTAGTCTGGAAAGCATAAAAACCTGTCAAAAGTAACATCAGGAATAAATCGCATTGGTAAATTGCTCACATGTTGACTGTTGAGTGCTTCCTGTATACAGTGATCAACATTTTTCCTTGTTACAGGACTAAATAGTGCTGAATCCCCATAAAAAAATGCCAGTATATATCTGTTGTCATCGACATTCTTCACCAGTAATCACCACATGAGCAATGCCCTCCTCTAAAATGGTGGAATCGTGTAGTATCCCTCAAAATGATTTCTCGATCCTCGATCTTGGAGATGACCTTGGCTGCATTATGACAGTCTCCACAAACCCTGAGATTCTTGAAAATCCTCAAGGTCATCCCAGGAGCAGTACTAATCAGACCAAAAGAAATAGCAAGCTTCTCACTGTGCCTCATTAGCATCTGCACCTTCAGAGTTTCATCCACATCATGCAGGACAAAATCAAGATCTGGAACATAACCCATTGCCTTCATCCTCTCCGCTAACTGGCCCAGTTTTTCATGGATCAAGTAAAGCTGAGGGTGCAATCTGTCATTTGATCTAAACTCATGCATCACACCCTTAATCTCTATCCAGCTATACCCAGGTGTTTTCACAACTGCATTATCCTTCATCCACCTCCTTACTCTAGAGACATCATCCCACTGATTTGCGCCAGCATAGATATTTGCAAGTTGTACATAGGCACCTGCGCTCTGTGGATCCTTTTCAATCAGTTTTCCAGCCGCAAGCTCAGCAAACTCCAAGTTCTTATAAACTCTACAAGCAGCCAATAAGGTTCCATATGCAGAAGGATGTGGTTCAAAGGGCATTGAGCGGATCAAGTCCACAGCTCTTTCAAGCTTACCAGCTCTGCAGAGAAGATCCACCATGCATGAGTAATGATCAACCCGAGGCTCAATTCCGTACAATTCCTGCATTCCCTCGAAACACCGTATTCCAAAATCACACAAGCCAGTGTGGATACAAGCAGTCAATACTGCCACAAAAGTAATCCAGTTGGGCTCAACTCCTTCATCCTTCATCCTTTCAAATAAATTGATAGCTTCCTTCCCATCTCCATGCTGAGCATAGCCAGATATCATAGCATTCCACGCAACCACATCCCTCGTATGCATTTCACCAAACAGTTTGCACGCGCTACTCAAGTCCCCACACTTGCAATACATGCTCACAAGTGACGTGCCCACCGTCAAGTTCCTACTCAACGGAAGCTTCATACACCACTGATGTATCTGCTTACCAAATCCAAGTGCAGACAAGTTACTGCAACCAAGAAGCACGCTGCTTAACGTCGATGCATTTGGCTGAACATTGGCCTCCCTGACCATGGTCCTGAACAGCCTCAAAGCATCATCCGCATGTGAATTCTTCACATACCCAGCAACCACAGCATTCCATGAAACCAAGTTCCTCACTGGCATTGCCTCAAAGTATTCGATGGCCTTCACCACATTGCCGATATCCATGTACCCCGACACCATCGCAGTCCACAGAACGGCGTCCCCCTTCTCCGGCGCATTCCTAAACCACTCCTCCGCTGCGCTCATGTCTCCAGAGCAGGCAAACCCGGAAACCATGGCGTTCCAGGAAACGGAGTTCCTCACTGGCATTGCTAGGAACACGGCCTTGGCCTCCTCCACGGCCCCACTCTTGGACAGCCCCGACACCATGGTGTTCCAGGACGCGACGTCCCTGACCGGCATCGATGCGAAGAGCCTCCGGGCGCCATCGGCGTCGCCGCTGGCGAAGTGGCACGAGAGGAGCGTGTTGTAGGAGACAGCATCCGGGGTCGGTATTCGGTCGAACAGGTGGCGTGCGTCCGCGAGGCGGCCGAGCGCCCTGGCGTAGCCGGCAAGGAGGCAGTTGTAGGTGGCCGTGGTCTTCCGTGGCGTGGATGCGAACGCCTCCTCCGCGCCGGTGAGGTCACCGCGCCGCACGGCCGCCGCGACGGCCACGGTGGAGAGTGAGCAGGTGCGGGACCGGGCACTGGCCAGGAATGGGCAGCAACATAGGATCAT
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| CDS seq | ATGATCCTATGTTGCTGCCCATTCCTGGCCAGTGCCCGGTCCCGCACCTGCTCACTCTCCACCGTGGCCGTCGCGGCGGCCGTGCGGCGCGGTGACCTCACCGGCGCGGAGGAGGCGTTCGCATCCACGCCACGGAAGACCACGGCCACCTACAACTGCCTCCTTGCCGGCTACGCCAGGGCGCTCGGCCGCCTCGCGGACGCACGCCACCTGTTCGACCGAATACCGACCCCGGATGCTGTCTCCTACAACACGCTCCTCTCGTGCCACTTCGCCAGCGGCGACGCCGATGGCGCCCGGAGGCTCTTCGCATCGATGCCGGTCAGGGACGTCGCGTCCTGGAACACCATGGTGTCGGGGCTGTCCAAGAGTGGGGCCGTGGAGGAGGCCAAGGCCGTGTTCCTAGCAATGCCAGTGAGGAACTCCGTTTCCTGGAACGCCATGGTTTCCGGGTTTGCCTGCTCTGGAGACATGAGCGCAGCGGAGGAGTGGTTTAGGAATGCGCCGGAGAAGGGGGACGCCGTTCTGTGGACTGCGATGGTGTCGGGGTACATGGATATCGGCAATGTGGTGAAGGCCATCGAATACTTTGAGGCAATGCCAGTGAGGAACTTGGTTTCATGGAATGCTGTGGTTGCTGGGTATGTGAAGAATTCACATGCGGATGATGCTTTGAGGCTGTTCAGGACCATGGTCAGGGAGGCCAATGTTCAGCCAAATGCATCGACGTTAAGCAGCGTGCTTCTTGGTTGCAGTAACTTGTCTGCACTTGGATTTGGTAAGCAGATACATCAGTGGTGTATGAAGCTTCCGTTGAGTAGGAACTTGACGGTGGGCACGTCACTTGTGAGCATGTATTGCAAGTGTGGGGACTTGAGTAGCGCGTGCAAACTGTTTGGTGAAATGCATACGAGGGATGTGGTTGCGTGGAATGCTATGATATCTGGCTATGCTCAGCATGGAGATGGGAAGGAAGCTATCAATTTATTTGAAAGGATGAAGGATGAAGGAGTTGAGCCCAACTGGATTACTTTTGTGGCAGTATTGACTGCTTGTATCCACACTGGCTTGTGTGATTTTGGAATACGGTGTTTCGAGGGAATGCAGGAATTGTACGGAATTGAGCCTCGGGTTGATCATTACTCATGCATGGTGGATCTTCTCTGCAGAGCTGGTAAGCTTGAAAGAGCTGTGGACTTGATCCGCTCAATGCCCTTTGAACCACATCCTTCTGCATATGGAACCTTATTGGCTGCTTGTAGAGTTTATAAGAACTTGGAGTTTGCTGAGCTTGCGGCTGGAAAACTGATTGAAAAGGATCCACAGAGCGCAGGTGCCTATGTACAACTTGCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGTACTAGCGATTTGGGGAATTGTATGA
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| Protein seq | MILCCCPFLASARSRTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSGDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVLAIWGIV |
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| Function | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial [UniProtKB/Swiss-Prot:Q9M4P3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0003260 | OsIR64_08g0003260.01 | Chr08 | 3066487 | 3068647 | - | NAM | ||
| CDS seq | ATGATCCTATGTTGCTGCCCATTCCTGGCCAGTGCCCGGTCCCGCACCTGCTCACTCTCCACCGTGGCCGTCGCGGCGGCCGTGCGGCGCGGTGACCTCACCGGCGCGGAGGAGGCGTTCGCATCCACGCCACGGAAGACCACGGCCACCTACAACTGCCTCCTTGCCGGCTACGCCAGGGCGCTCGGCCGCCTCGCGGACGCACGCCACCTGTTCGACCGAATACCGACCCCGGATGCTGTCTCCTACAACACGCTCCTCTCGTGCCACTTCGCCAGCGGCGACGCCGATGGCGCCCGGAGGCTCTTCGCATCGATGCCGGTCAGGGACGTCGCGTCCTGGAACACCATGGTGTCGGGGCTGTCCAAGAGTGGGGCCGTGGAGGAGGCCAAGGCCGTGTTCCTAGCAATGCCAGTGAGGAACTCCGTTTCCTGGAACGCCATGGTTTCCGGGTTTGCCTGCTCTGGAGACATGAGCGCAGCGGAGGAGTGGTTTAGGAATGCGCCGGAGAAGGGGGACGCCGTTCTGTGGACTGCGATGGTGTCGGGGTACATGGATATCGGCAATGTGGTGAAGGCCATCGAATACTTTGAGGCAATGCCAGTGAGGAACTTGGTTTCATGGAATGCTGTGGTTGCTGGGTATGTGAAGAATTCACATGCGGATGATGCTTTGAGGCTGTTCAGGACCATGGTCAGGGAGGCCAATGTTCAGCCAAATGCATCGACGTTAAGCAGCGTGCTTCTTGGTTGCAGTAACTTGTCTGCACTTGGATTTGGTAAGCAGATACATCAGTGGTGTATGAAGCTTCCGTTGAGTAGGAACTTGACGGTGGGCACGTCACTTGTGAGCATGTATTGCAAGTGTGGGGACTTGAGTAGCGCGTGCAAACTGTTTGGTGAAATGCATACGAGGGATGTGGTTGCGTGGAATGCTATGATATCTGGCTATGCTCAGCATGGAGATGGGAAGGAAGCTATCAATTTATTTGAAAGGATGAAGGATGAAGGAGTTGAGCCCAACTGGATTACTTTTGTGGCAGTATTGACTGCTTGTATCCACACTGGCTTGTGTGATTTTGGAATACGGTGTTTCGAGGGAATGCAGGAATTGTACGGAATTGAGCCTCGGGTTGATCATTACTCATGCATGGTGGATCTTCTCTGCAGAGCTGGTAAGCTTGAAAGAGCTGTGGACTTGATCCGCTCAATGCCCTTTGAACCACATCCTTCTGCATATGGAACCTTATTGGCTGCTTGTAGAGTTTATAAGAACTTGGAGTTTGCTGAGCTTGCGGCTGGAAAACTGATTGAAAAGGATCCACAGAGCGCAGGTGCCTATGTACAACTTGCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGTACTAGCGATTTGGGGAATTGTATGA
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| Protein seq | MILCCCPFLASARSRTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSGDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVLAIWGIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.197592 | 0.224169 | 1.048039 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0153600 | RBH | 0.815949 | 0.917387 | 1.756748 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05750 | RBH | 0.618546 | 0.719889 | 0.405650 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0153600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003570 | RBH | 0.148895 | 2.727075 | 1.916359 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003620 | RBH | 0.050979 | 1.156906 | 0.818104 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003600 | RBH | 1.507126 | 1.327165 | 4.082310 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003580 | RBH | 0.177044 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003400 | RBH | 1.472877 | 1.632114 | 3.749681 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0047000 | RBH | 1.853629 | 8.316398 | 4.177773 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007220 | SBH | 0.249065 | 0.218042 | 0.504156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0052400 | RBH | 0.9021825 | 3.4409105 | 3.726572 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003300 | RBH | 0.000000 | 0.235490 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003320 | RBH | 0.181414 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0003140 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003410 | RBH | 0.387552 | 0.214998 | 0.454996 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003350 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003290 | RBH | 0.071519 | 0.899586 | 0.405297 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003200 | RBH | 0.0 | 0.0 | 0.0 |
