Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0013920 | OGI:12050920 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:18566488-18568178 | ||||||||
| Gene Symbol | OsFbox655, Os_F0116 | ||||||||||
| DNA seq | tcaacatctgcattcaaagggatcagtaaaagacaaatcttggacatgctcaatatctataggacattcaggatctgcatgatggtggcatctatcagtggtaaacttgaaacgcgcacatctcgaagcccttttgtcgagctgaagcatcttatgttgttttgcaacaaacccatcatagtaatcttcagactttaccacaaatttcatagactctagcactttagcattaagtacaaagaactgggcaaagtcgatttgtggcttggttccccggtaattttccaactccactgtcttcagacggatatcaaggattttgataagagtctggtattcacaacgccaataattatttccagcagatagacaacactgaagaaagacagagaacaaaacttaaacactttttttaggagcaacaacaaatcgattatgagtacattaaactctcagtgaaaaataatttaccttcaagtacaatttctccaagcatggaaagcatctcatcaagtcaatcaccttagccagattaagaacaaacatattgattgctaaaatcctcacagtgcgcacggcctctgtcaacctaacaacactcactcccttcataaaacatgtgacataacattactaaaggccatccatccataagttgagatagatatgaaattgacctacaaagttacctcgacaacagttgtagtgccaaacatgatccttgggccaaaccatcgatctgtaaggcaaccaatagtctccagcttcggcgcggaaattaccgataatcgcaggttattgtgcactgcaagatcgagcaacttctcgagaagaggggcatcctcgacgatgatttcctccagctgcgtctgccgcggcagcgctgctatccgacgacgcgcaaccaacacacccaagcttctaaggctaggcgagttgatccgaacgcgacggaagccaacgctgcgagccagcagcaagcactccagcagcgggcagcgggcgatcatggcgtgcagcgaggcctccgtgatggtgacgtcctcgagcccgagatgcttgagccgcgggaagcgaagctcatggacggtggtgtgctggagctcgcacctgctgatggtggcgatgtggagggtataagagaatcggaagagggataccggtggaggaggaggcggcgatggtggcggcggcgcaccgccgcggttgctgaggaactcgagctcctgaaggttgtcgacggcggcggatcggagccaggtatccacggtgtcgcggctgctgtcggcggggacgcagaggcagcggcatgggcccgggtgggcggagaggacggcggagatgacgccggcgacggcgacggcgagggcgttccccttgttgtggcggcggagggggaggaggctacggtagtcgaggcggagcggcgtggagcgccagagatggcgccaccgcttggcgaggacctgcgtgctgcaggcttccctggtggggaggcgggcgatgatgtcgcggaggatgtcgtccgggaggtccccgatgaggtcgccggcgccggcctcctcatcaccatcatcttcttcctcctccgtcctcctcctcttcgggctgcctcctccttccttttctggcgggttaacttctccatggctctcgtgcgcgaccaatacggatttcttgacatggcccat
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| CDS seq | atgggccatgtcaagaaatccgtattggtcgcgcacgagagccatggagaagttaacccgccagaaaaggaaggaggaggcagcccgaagaggaggaggacggaggaggaagaagatgatggtgatgaggaggccggcgccggcgacctcatcggggacctcccggacgacatcctccgcgacatcatcgcccgcctccccaccagggaagcctgcagcacgcaggtcctcgccaagcggtggcgccatctctggcgctccacgccgctccgcctcgactaccgtagcctcctccccctccgccgccacaacaaggggaacgccctcgccgtcgccgtcgccggcgtcatctccgccgtcctctccgcccacccgggcccatgccgctgcctctgcgtccccgccgacagcagccgcgacaccgtggatacctggctccgatccgccgccgtcgacaaccttcaggagctcgagttcctcagcaaccgcggcggtgcgccgccgccaccatcgccgcctcctcctccaccggtatccctcttccgattctcttataccctccacatcgccaccatcagcaggtgcgagctccagcacaccaccgtccatgagcttcgcttcccgcggctcaagcatctcgggctcgaggacgtcaccatcacggaggcctcgctgcacgccatgatcgcccgctgcccgctgctggagtgcttgctgctggctcgcagcgttggcttccgtcgcgttcggatcaactcgcctagccttagaagcttgggtgtgttggttgcgcgtcgtcggatagcagcgctgccgcggcagacgcagctggaggaaatcatcgtcgaggatgcccctcttctcgagaagttgctcgatcttgcagtgcacaataacctgcgattatcggtaatttccgcgccgaagctggagactattggttgccttacagatcgatggtttggcccaaggatcatgtttggcactacaactgttgtcgagggagtgagtgttgttaggttgacagaggccgtgcgcactgtgaggattttagcaatcaatatgtttgttcttaatctggctaaggtgattgacttgatgagatgctttccatgcttggagaaattgtacttgaagtgttgtctatctgctggaaataattattggcgttgtgaataccagactcttatcaaaatccttgatatccgtctgaagacagtggagttggaaaattaccggggaaccaagccacaaatcgactttgcccagttctttgtacttaatgctaaagtgctagagtctatgaaatttgtggtaaagtctgaagattactatgatgggtttgttgcaaaacaacataagatgcttcagctcgacaaaagggcttcgagatgtgcgcgtttcaagtttaccactgatagatgccaccatcatgcagatcctgaatgtcctatagatattgagcatgtccaagatttgtcttttactgatccctttgaatgcagatgttga
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| Protein seq | MGHVKKSVLVAHESHGEVNPPEKEGGGSPKRRRTEEEEDDGDEEAGAGDLIGDLPDDILRDIIARLPTREACSTQVLAKRWRHLWRSTPLRLDYRSLLPLRRHNKGNALAVAVAGVISAVLSAHPGPCRCLCVPADSSRDTVDTWLRSAAVDNLQELEFLSNRGGAPPPPSPPPPPPVSLFRFSYTLHIATISRCELQHTTVHELRFPRLKHLGLEDVTITEASLHAMIARCPLLECLLLARSVGFRRVRINSPSLRSLGVLVARRRIAALPRQTQLEEIIVEDAPLLEKLLDLAVHNNLRLSVISAPKLETIGCLTDRWFGPRIMFGTTTVVEGVSVVRLTEAVRTVRILAINMFVLNLAKVIDLMRCFPCLEKLYLKCCLSAGNNYWRCEYQTLIKILDIRLKTVELENYRGTKPQIDFAQFFVLNAKVLESMKFVVKSEDYYDGFVAKQHKMLQLDKRASRCARFKFTTDRCHHHADPECPIDIEHVQDLSFTDPFECRC |
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| Function | Putative FBD-associated F-box protein At3g50710 [UniProtKB/Swiss-Prot:Q9SCQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0013920 | OsGoSa_12g0013920.01 | Chr12 | 18566488 | 18568178 | - | NAM | ||
| CDS seq | atgggccatgtcaagaaatccgtattggtcgcgcacgagagccatggagaagttaacccgccagaaaaggaaggaggaggcagcccgaagaggaggaggacggaggaggaagaagatgatggtgatgaggaggccggcgccggcgacctcatcggggacctcccggacgacatcctccgcgacatcatcgcccgcctccccaccagggaagcctgcagcacgcaggtcctcgccaagcggtggcgccatctctggcgctccacgccgctccgcctcgactaccgtagcctcctccccctccgccgccacaacaaggggaacgccctcgccgtcgccgtcgccggcgtcatctccgccgtcctctccgcccacccgggcccatgccgctgcctctgcgtccccgccgacagcagccgcgacaccgtggatacctggctccgatccgccgccgtcgacaaccttcaggagctcgagttcctcagcaaccgcggcggtgcgccgccgccaccatcgccgcctcctcctccaccggtatccctcttccgattctcttataccctccacatcgccaccatcagcaggtgcgagctccagcacaccaccgtccatgagcttcgcttcccgcggctcaagcatctcgggctcgaggacgtcaccatcacggaggcctcgctgcacgccatgatcgcccgctgcccgctgctggagtgcttgctgctggctcgcagcgttggcttccgtcgcgttcggatcaactcgcctagccttagaagcttgggtgtgttggttgcgcgtcgtcggatagcagcgctgccgcggcagacgcagctggaggaaatcatcgtcgaggatgcccctcttctcgagaagttgctcgatcttgcagtgcacaataacctgcgattatcggtaatttccgcgccgaagctggagactattggttgccttacagatcgatggtttggcccaaggatcatgtttggcactacaactgttgtcgagggagtgagtgttgttaggttgacagaggccgtgcgcactgtgaggattttagcaatcaatatgtttgttcttaatctggctaaggtgattgacttgatgagatgctttccatgcttggagaaattgtacttgaagtgttgtctatctgctggaaataattattggcgttgtgaataccagactcttatcaaaatccttgatatccgtctgaagacagtggagttggaaaattaccggggaaccaagccacaaatcgactttgcccagttctttgtacttaatgctaaagtgctagagtctatgaaatttgtggtaaagtctgaagattactatgatgggtttgttgcaaaacaacataagatgcttcagctcgacaaaagggcttcgagatgtgcgcgtttcaagtttaccactgatagatgccaccatcatgcagatcctgaatgtcctatagatattgagcatgtccaagatttgtcttttactgatccctttgaatgcagatgttga
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| Protein seq | MGHVKKSVLVAHESHGEVNPPEKEGGGSPKRRRTEEEEDDGDEEAGAGDLIGDLPDDILRDIIARLPTREACSTQVLAKRWRHLWRSTPLRLDYRSLLPLRRHNKGNALAVAVAGVISAVLSAHPGPCRCLCVPADSSRDTVDTWLRSAAVDNLQELEFLSNRGGAPPPPSPPPPPPVSLFRFSYTLHIATISRCELQHTTVHELRFPRLKHLGLEDVTITEASLHAMIARCPLLECLLLARSVGFRRVRINSPSLRSLGVLVARRRIAALPRQTQLEEIIVEDAPLLEKLLDLAVHNNLRLSVISAPKLETIGCLTDRWFGPRIMFGTTTVVEGVSVVRLTEAVRTVRILAINMFVLNLAKVIDLMRCFPCLEKLYLKCCLSAGNNYWRCEYQTLIKILDIRLKTVELENYRGTKPQIDFAQFFVLNAKVLESMKFVVKSEDYYDGFVAKQHKMLQLDKRASRCARFKFTTDRCHHHADPECPIDIEHVQDLSFTDPFECRC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0496700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0496700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013970 | RBH | 0.0 | 0.0 | 0.359766 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014020 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0255600 | RBH | 0 | 0.0041405 | 0.0607085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0279400 | RBH | 0 | 0 | 0.0149195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013740 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013830 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013660 | RBH | 0.0 | 0.000000 | 0.0 |
