Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0023410 | OGI:11077650 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:29942221-29944449 | ||||||||
| Gene Symbol | YR2, YR6, YR9, YR10, YR21, YR23, - | ||||||||||
| DNA seq | atgcccaactgggaggagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcaaccaaggaagggggagaggatggaactgctgcttcgaagcaaaacggggaggaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttgggacttgtgaactgccccaagctgagggctctcccaccatagcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaagagccaattaattagatggcacaaggtatgtacactgattggttgggttttttcactggaataaactaatcatagggttgtacattcatgctgctcctcagctcttcagttgtatgcagctattcttagcttttgatagtctccttagatgttcatgttgtgtgcattgactgattgtttgatgatctatatgatttagttctttttttcattagtgttgcatgtaaccatttcaccgtggttaatgttttcataaaatggtgtatacacatcaacaaattaattagatggccaaatcttttatcttctcatgatcttattaacatgcatcctgcacgtacggtgtattccagatgaatgtattgtcctatatgtactacaacatgatcgtatgcagtagtgttcctagctctgcacacagagatagagattactgctactccaaaagaaaattgtatgggttatattgtcaccaaacaatgctatgatggcattgatatattcactatatatatgccagtagttatatcacatatgcatatatccatccaaggacttggggacaacataaatggtttagcatttggtacacaggctgcataagttcacgactaaacataatggacttcgaagtaatccttaattcagctcttgaatgtgctagctatgattgactgtgtagaggtcggtttttatttaatccactatctaaaaatgtgctatatatgatgaagaccagctcacatgcatttagccttcaattctacaagtgtgttctatgtcatatcaatgtgcgcatttagcattcactatcttataaaaaaacacaaatacacatgaattttcgcaagacattaggcctatagagtagttttttagatttgacaaaaaaatatgtcaggcccaatgtttcagattccttgtagcctatgagcaggatattgaatatggaagtgttgtgcccaacatctgttcctagcgtagggctcctaattaaggtttgtttggtgaaaaacaaaagccacctaatgtctttgtattggttcaaattgattgatatttttgttcgtattacatctgttaaaataagcagtggatattgccaagcgacatgcctatgcatagtccatatgtgtattttccttatactttttgtaatgcacgtctgatgtttggtaagttcaattgcagaaaatatgattgttgtaaaacggatgtcacttgtattttcttttccttaattaagttatttaattaccaaattgcttatgtatatacatccatgattaattgtgtgcgcttatttgtattgtaggttaatcttgaaggatttggggtgcagtcacctgtaatctatatttttgtctttacctagttactggtctttaaaatattaaaaaaattaaaaaaatgaaaaatttaaaaaaacaaaaatatcaaaaaatgggaaaatgccaaaaaaatggttatattttctttagctcttgtaaaatacattgccgtgttttattaggtgtgtgtttctttttaatttttttttattgtaggtgtgtaggtaactccgcctatgtcatcctaggtttagtaaatgacatagccggtcccaagcccggaaaaaggaggaggggaacatcttgtatagatgttggttgaaatgatgctctccttccacatagt
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| CDS seq | atgcccaactgggaggagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcaaccaaggaagggggagaggatggaactgctgcttcgaagcaaaacggggaggaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttgggacttcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaa
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| Protein seq | MPNWEEWSFVEEEEEVQEEEAAAATKEGGEDGTAASKQNGEEALSPTPRSSWLLPCLNELGLLGQQATNLKELDIRRARCLKTVEHLPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVEMLGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNEWF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0023410 | OsGoSa_11g0023410.01 | Chr11 | 29942221 | 29944449 | + | NAM | ||
| CDS seq | atgcccaactgggaggagtggtcctttgttgaagaagaagaagaggtgcaggaggaggaagcagctgcagcaaccaaggaagggggagaggatggaactgctgcttcgaagcaaaacggggaggaagccctgtctccaactccaaggtcgtcgtggctgctgccttgtttgaatgagttgggacttcttggacagcaggccaccaacttgaaggagctcgatataagaagagcaagatgcttgaagacggtggaacacctcccattcctctctggtatactttttgttcaaagttgtcaaggcctggagataatctccaaccttccccaagtgagagagctacttgtaaatcattgcccgaatttgaggcatgttgagatgttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccagggcttgaggagcaacatcgccagctccatggagatgagcataagttggaggtcaacgagtggttttaa
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| Protein seq | MPNWEEWSFVEEEEEVQEEEAAAATKEGGEDGTAASKQNGEEALSPTPRSSWLLPCLNELGLLGQQATNLKELDIRRARCLKTVEHLPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVEMLGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNEWF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0677101 | SBH | 0.0 | 0.207093 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45190 | SBH | 0.000000 | 0.082773 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0677101 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023630 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023550 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023140 | SBH | 2.762746 | 13.436707 | 26.538805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023510 | SBH | 0.000000 | 0.279106 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0420800 | RBH | 0.2352695 | 1.2420205 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0431800 | SBH | 0.0247405 | 3.3243495 | 0.4231555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | RBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023370 | SBH | 5.354241 | 22.313065 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023100 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023310 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023300 | SBH | 0.434635 | 0.913598 | 2.277780 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023730 | SBH | 1.486182 | 20.188963 | 5.723283 |
