Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0023090 | OGI:08076910 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:28209941-28218201 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cactggtatataaaaaACaccccatcctgtgtgcctgccgactcgcccacgcaactccgactctttccttccccaattcccccgtccaccggccgcggacctcgccggaaccctagcccCGccgcccccctcccctccccgatcgcccgattcggtggtcggggtgatggactccgacgccgagatgcccatgtccagcgacgaagagatgttggatgacgaggactattacgactacagtgatgacatgggtgaggacgatgatgggagcggcggcgggggcgggggagatagcgatggggaggaggaggaggagggggAggaggagctggtgggcggcgactacgagggccgcgaggcggaggggagcgacgaggtggtgtcccgccgcgagcaggtgaggattttttggtcggaagcagatcaggtggtagactggtggtggtgttttttttttcttttttcttttttttagcaggaagcgcgacggtcgatttcattaagattttgggaaaaaaaaagttttcatacaactcgagattacaccccccttcggtgtagcttagcggggaggcaaggcgagctgaacgtagatcaggacctggaagatcaGgggtgctagattggtagcgtcgaacggtctcgagaatggcgtcgttttgctgaaataaggattaggatgagcttatggcgtccttttctttttttttctttttttctgaaatgaggatcgggatgagcttttgcggcagttcttaattttgatgtaccagtcagctaacgcaactgaaatatgttgataagattgatggtccagggtgcttgtcatgtactcggatgtgtagtagttgtttgtgattcacatctgctctttgggaaattaaggaatgttctgcttccgcacctagatgtgatctatcttccgctgttaggacagccttgggtgttttatacctgttcgcattgtgcgcaagccgacaagttgatgattacgttagtgctaagatgcttagattgttatctgctcaatcaatattgatgctatacatggtgaatattgattagtgagcacaggtttacgcttaaggaataacatggtagagagtttagtctttgtaatggaactcatggatcggtgatgatgtactgctttcctgggttttgtttgtgctgatccaagcaaggttcacacctgggcatcaacagacgtagccaaatcatgatctatgttaactattatatgcttgataatgtgttgctagtttgttagcttaaatacaaaggttaaaaggcggataattaatcgcatgcatcacgatgaaataccatatgtttctagagagctttctgtgctttctttccataatttccaagctggtactgtgtttggttgttttcgttcatgttgattggcacttctatgtcatcttgtttcactggatatccttgagtgtctctaaaaactggcccatgtttggtaactatggacagagatacattgtattaactgaaaaggatataaatgagcgtcaagaggaagatataggcaaggtatctgctgtactatcgattcgaagggaggaggcgtgtgttcttcttcatcactacaaatggtaagtttgttaaccgtcattcattgaatattcttttatcattatactccctccgtcccataatataagagattttgggtggatgtgacatatcctagtactacgaatctggacaggtttcttaaccagattcatagtactaggatatatcacatccacccaaaatcccttatattttgggatggagggagtaagagtttactgaaatgagattgtacatatgtaatacatggtgtagtgagctagccaaatttcccttgatgcacatgcagtttgtttttactctgttacacttttcaaggtgctgtctgcaagcttccctttgataatttcttgaaaattatcactgtgaagtcttaggtagtacctccagattttgtatatgctggcaatttagtttacgtgtcattgctggtatgcaagtggtatgatgtgggattttctaaccacttgacggttggaataagctgatcttccacttttggaatgtagaaataagggtgcaggtttgtatttgttctttgttaatctttatgagttctctgttcaggaacatcagcaagttaagcgatgaatggtttgcggatgaagaaaaagttcgtgatattgttggattacttttaaatggaattgatcttcctaactctagaaaggtttgtattatttattcaaatgccagtatattgttatcacttgtttgttgtgctggccacatgtcatatctgatcaaacctttggctgtggctacatatacactgtttcttacatctgacagctgttttggttgcagctaacttgtggaatatgttttgaagggtattcttctgatgcgatgagttctgctggttgtgatcatttttattgccatgaatgctgggaaggTCtctctctctctctctctgtgtgcatgcttttgtgcataacttcctttttgcaattccaccactagcttagatagtttcaccatcagtgctcatgtatagactatcttgtagacttgtagttgttgtttttggtaaacatgatcaagatctgttcctgtgttgcagttattttatttttccctcagaataatgaaaatttctgataatataaattcaacctttcaggttatattagtgctgcaataagtgatggtccaggatgtttgtcattgcgatgccctgatccatcttgtggtgctatggttcttcagaacatgattaataagttagctaaagatgatgataaagtgagatatgcacgatttatcttacgtgcatatgttgaagatagcaagaaggtaatatgtttgaacaagctaactaattactccacttgatagttctttgtggagtacctattttttattgtttatttttctaacgatttgaaatgatgagctgtgctctttctgttaaccttttgtataacctatggcatttcctgcagactaaatggtgtccagctcctgactgtacatgtgcagtggaatttgtcagcgatgggaactatgatgtctcatgcaattgcaaattcagtttttgttggaacgttagtatttctggctccattttcctgacgatttaattctactttttttattgctagtgatgaaaagtgtggagcttcatcaatgctttggtgatgtttgcagtgcacggaggaagctcatcgaccagtgaactgtgagactgtttctaggtggatattaaagaatagcgcagaatctgaaaatatgaactggtatggttcaggctcaaaactttattaagccatagtgtacggatagtgtatagataaggaattcattaatttttgtggagataaatctatgttcaaacatttgtgttgtatatttacttctttttttaacctatccttgatgccaatattgcagctatcttctaactttcctcatggttatgagtaaaaactgaggtggtgaaaaaaattgtgcatttaatttacgtacgtatattcagatgttatgtattcagaaacatcaaactttgtggacatcctcatgtgtgactggtggtctggaagcggaagatttgaggatgcaaggaactgtgaacactattaactctttgctgagtcagggctgcaagggctgatgcattgttttttaacaatatattatgacggaaaacatgtattatatgtggaactgtggcttaaaccttataataaacacctcttaatttatgttaaatacttggcattgactccatttttatcaattgatgacttctttttatggaaaaacttgtggaggctctagtgagaacattatgctgctcaagcgtttttgccatgtttacattacaggaatgtttgcctattatacaattctgttagaattgtataccaattcttcagttcatggctagtccatgaatgctcaaatgtatttaaggtctttatgttgcttgaaatcatctaatcatgtcagatggtttatcatgttgttgatgatccttttcaggatactggctaattctaagccgtgcccgaaatgcaaacgaccaatagagaaaaaccagggatgcatgcatatgacttgcactccaccttgcaaatttgagttctgctggtatagtccaatgtctatgcttgctgaaatatttatgtccatattactagtgtatgtacctctcatttgttttctttgaacatttcaggttatgtctgggttcatgggctgaacatggggagagaactggtggattttacgcttgtaatcgctatgaatcagcaaagaaggagggagttgtatgttttatcttgagactatccaattgcatttagtagaaggaatcagtttctagatgtcttgtgtattttgttattgcttctgtagaattaaatgtttcaatcccacaagtcaatgtcgagtccaaattgacagtttgttcaattagttcattcattcatagaatcataagggttactttttcctaacttaattacctctaatgcagtatgatgagactgaagcaaggagggaaagagccaaaaattcacttgagagatacatgcattactatgagcgctgggcatctaatcagacggtatgttcaacatgctcaagtttgatgtctctttgagtttttttttctttctacaacaactatacgtgcagctttagtcattcttgtgctcataacttactctgtgtttttgaaccttctggtttacttggcaagtgttgtgttggccatatgcttgggcagatactaattttgacttaaattcttacctaccgaatgtagcccaactagctgcagctttatttgaagattacttgccaagtttatctcttactccctccgtcctagaatgtagcaacctaggataggatgagacccatcctaggacaacgaatttggacattcctcatgtccagattcgttgttctaggatgggtcatcctatcaacattatgggatgaaggtagtaggtgctaataaatgctcttttttaatttttatgttgtattaccttatcagttcatgatataaaaaaatacagttccagatgtttttctatacctgatgggtatatagtttctaatctactgtacatgcttgggatgaatgttctgcattgttctattctgaacttggaattttttctgctgtagtatgcaagtttctgtactgacatattcacttatattgccagtcgaggcagaaggcacaagcagatctgcaaaaggcagaaaaggaacaagtaagcattcgcatcatgttaggttgggggcgttgcatttagggcaagacataattgtttatcttcgccattcattcgtattttgtatttgatagctgctaactctatttcttctctatgtgctacagcttgcaaaattaacagatgtttttggaataccggagacccaactgaagttcataattgaagcttggtcacaggtttgatatcataaatatgtcatgacccaaatgacactccatactatacaattcactgcgtctgatgcatgcaccattccactatgtctatttcagattattgaatgcaggcgggtactcaaatggacatatgcttatggctattatctggacgacaaggtcaagagcgaatttttcgagtacctgcaaggtagttgtttgttgcattccaaaataaaatcctaagttctaccacgtgcttgccaaaaatcatgtggtatgtatattatatcttttataggtgaagctgagtctggtctggagcgtcttcaccaatgtgctgagaaagacctgcaatcatttttgactgtgagatctgataatactgaacctgcaccatcaattgctgaattcggtgacttccgggtgaagcttgcggggctgacaaggtatttcacagttattgtttttcctatatccttttgggtttggccatattcaactactgcatgctttaagatagttactcttgtttcaattagtactagtttttaggatgaacccaagggtttgcttttcttcatccttgaactttttttttttttgccgagtcggctgaaaggttcggtcgaccaaatttcattaaggaaaaggggaacaaattacaaatgggctttatatcgacagtaggatgtcgagattagggtggggacaggtcccccaaacaatcgaagctatacagaaaaggctgaaggctacaataaaaaattgatgtcttacacaatatgaaaataacctccagacgtccacaccgaaacttcttctttgatgtcttccaataaccgctccacggtgtgctgcttgtgctgaaagattttggcgttgcgctccttccaaattatccttgaacgttcttacattgttcttaacaatccttgggtaggttcacatgaatgtaactaattatgccataatttaaatgccatttgagaattttagaagcctgagattttataattctaataaaggacatgaactttgtttgtgcccacctttctcttggtaatgatttagtattaatccatcatgttaagtagtcaaacagtcaaagaggtggacatttcagctatgctctttacttgttgaccctagacttgcttctttgattttggtagttgttgtcgcaaatgtttttacttgctagcattttacaaggtcttgagatgctgtctatgctcatggatagcagcttccttgcctattctttattgtcatatgagctttgtttacgatatgttgactttgcttcgtctccactgcagtgtgactcggaattattttgagaaccttgttcaagcactggaggctggcttggaggatgtacactctactgcccagggtaccacatcaagcaatgccaccaacatcccctccaagaaagcagtcactaaaggcaaaacaaagaagcagcttcctagaacatcttcggacaactcagatgaaggctggccttgtgagcgctgcacgtttattaacccttcatcggtggatgcatgcagcgtctgcgataagcatagatactagatgaaaaactggctgaaagccagtgccccccataaatctcgaagctgttgagaaggtgggtgcttactcaaagctcatgagaagattgttgattgtagttctgttcctaaattatgtggcgttgaagaagagcttccaatggcagcaatggcgtacatgtgtgagtgaaggtccctggttgtatctagattgcagcaacaatgcaggaccgactatggagcgaaggtggatggggtacaaacatgtggtagtctttttttttttttactttctagcctatattatgtacatattagttatggtctgtagttgtgttaatgtggtgggcaatgttctgtttttgtttaaatgacatgagatgatgtggtgggtaaagttccaccccctgtactgaccaacctgtgaagctggagaatggtagatgtagctcttatctattgagcggtcatgtaaattaccaaagctcgtcataatctatggttgataaatcatgtgggaaaatggtgtttactcagcagtgcctgatttcttatagattcgtcgttcgagctgcatattttgatggatggaatttttgatgttgtgtgcatattatagcaaacaaaaatacctatttaccgaaagagtagcaaaaccggtacgatccccatttcagttccatttctcatttcacaatccaagcgcagcatcgcatcgtgttgccactccaatacatttctctaagttggtcttgtatctctctctagttatccctgtctggcgaaggtgaaggatgtgcagtttataagccttgatgaaacaaagttgagattgttgggcatcatcgatcatcagggagtatgagtatccttgcagagcctcctgctgagggtgctgaagttggccctggagaagtgcctggaggcgttcctccagtcggcgccggacttcatcatgagctcgaactcctggtagctgatgcggccgtcgttatcggtgtcgacgtcgcggaggatctccaggatggcctgctcgtttgggcccacctcctcccgcagctcgtccagctcgatgaacccgctgccgtccttgtcgaagtagttgaacgccgccgccaggtactcgtcgttgctcatcttcttcaggtgcaccgacaccgtcacgaactcgtcgcagtccagcgtcccgt
More
|
||||||||||
| CDS seq | atggactccgacgccgagatgcccatgtccagcgacgaagagatgttggatgacgaggactattacgactacagtgatgacatgggtgaggacgatgatgggagcggcggcgggggcgggggagatagcgatggggaggaggaggaggagggggAggaggagctggtgggcggcgactacgagggccgcgaggcggaggggagcgacgaggtggtgtcccgccgcgagcagagatacattgtattaactgaaaaggatataaatgagcgtcaagaggaagatataggcaagttaagcgatgaatggtttgcggatgaagaaaaagttcgtgatattgttggattacttttaaatggaattgatcttcctaactctagaaagctaacttgtggaatatgttttgaagggtattcttctgatgcgatgagttctgctggttgtgatcatttttattgccatgaatgctgggaaggttatattagtgctgcaataagtgatggtccaggatgtttgtcattgcgatgccctgatccatcttgtggtgctatggttcttcagaacatgattaataagttagctaaagatgatgataaagtgagatatgcacgatttatcttacgtgcatatgttgaagatagcaagaagactaaatggtgtccagctcctgactgtacatgtgcagtggaatttgtcagcgatgggaactatgatgtctcatgcaattgcaaattcagtttttgttggaactgcacggaggaagctcatcgaccagtgaactgtgagactgtttctaggtggatattaaagaatagcgcagaatctgaaaatatgaactggatactggctaattctaagccgtgcccgaaatgcaaacgaccaatagagaaaaaccagggatgcatgcatatgacttgcactccaccttgcaaatttgagttctgctggttatgtctgggttcatgggctgaacatggggagagaactggtggattttacgcttgtaatcgctatgaatcagcaaagaaggagggagtttatgatgagactgaagcaaggagggaaagagccaaaaattcacttgagagatacatgcattactatgagcgctgggcatctaatcagacgtcgaggcagaaggcacaagcagatctgcaaaaggcagaaaaggaacaacttgcaaaattaacagatgtttttggaataccggagacccaactgaagttcataattgaagcttggtcacagattattgaatgcaggcgggtactcaaatggacatatgcttatggctattatctggacgacaaggtcaagagcgaatttttcgagtacctgcaaggtgaagctgagtctggtctggagcgtcttcaccaatgtgctgagaaagacctgcaatcatttttgactgtgagatctgataatactgaacctgcaccatcaattgctgaattcggtgacttccgggtgaagcttgcggggctgacaagtgtgactcggaattattttgagaaccttgttcaagcactggaggctggcttggaggatgtacactctactgcccagggtaccacatcaagcaatgccaccaacatcccctccaagaaagcagtcactaaaggcaaaacaaagaagcagcttcctagaacatcttcggacaactcagatgaaggctggccttgtgagcgctgcacgtttattaacccttcatcggtggatgcatgcagcgtctgcgataagcatagatactag
More
|
||||||||||
| Protein seq | MDSDAEMPMSSDEEMLDDEDYYDYSDDMGEDDDGSGGGGGGDSDGEEEEEGEEELVGGDYEGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDAMSSAGCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYESAKKEGVYDETEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKAEKEQLAKLTDVFGIPETQLKFIIEAWSQIIECRRVLKWTYAYGYYLDDKVKSEFFEYLQGEAESGLERLHQCAEKDLQSFLTVRSDNTEPAPSIAEFGDFRVKLAGLTSVTRNYFENLVQALEAGLEDVHSTAQGTTSSNATNIPSKKAVTKGKTKKQLPRTSSDNSDEGWPCERCTFINPSSVDACSVCDKHRY |
||||||||||
| Function | Probable E3 ubiquitin-protein ligase ARI8 [UniProtKB/Swiss-Prot:Q8W468] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0023090 | OsGoSa_08g0023090.01 | Chr08 | 28209941 | 28218201 | + | NAM | ||
| CDS seq | atggactccgacgccgagatgcccatgtccagcgacgaagagatgttggatgacgaggactattacgactacagtgatgacatgggtgaggacgatgatgggagcggcggcgggggcgggggagatagcgatggggaggaggaggaggagggggAggaggagctggtgggcggcgactacgagggccgcgaggcggaggggagcgacgaggtggtgtcccgccgcgagcagagatacattgtattaactgaaaaggatataaatgagcgtcaagaggaagatataggcaagttaagcgatgaatggtttgcggatgaagaaaaagttcgtgatattgttggattacttttaaatggaattgatcttcctaactctagaaagctaacttgtggaatatgttttgaagggtattcttctgatgcgatgagttctgctggttgtgatcatttttattgccatgaatgctgggaaggttatattagtgctgcaataagtgatggtccaggatgtttgtcattgcgatgccctgatccatcttgtggtgctatggttcttcagaacatgattaataagttagctaaagatgatgataaagtgagatatgcacgatttatcttacgtgcatatgttgaagatagcaagaagactaaatggtgtccagctcctgactgtacatgtgcagtggaatttgtcagcgatgggaactatgatgtctcatgcaattgcaaattcagtttttgttggaactgcacggaggaagctcatcgaccagtgaactgtgagactgtttctaggtggatattaaagaatagcgcagaatctgaaaatatgaactggatactggctaattctaagccgtgcccgaaatgcaaacgaccaatagagaaaaaccagggatgcatgcatatgacttgcactccaccttgcaaatttgagttctgctggttatgtctgggttcatgggctgaacatggggagagaactggtggattttacgcttgtaatcgctatgaatcagcaaagaaggagggagtttatgatgagactgaagcaaggagggaaagagccaaaaattcacttgagagatacatgcattactatgagcgctgggcatctaatcagacgtcgaggcagaaggcacaagcagatctgcaaaaggcagaaaaggaacaacttgcaaaattaacagatgtttttggaataccggagacccaactgaagttcataattgaagcttggtcacaggtttga
More
|
|||||||
| Protein seq | MDSDAEMPMSSDEEMLDDEDYYDYSDDMGEDDDGSGGGGGGDSDGEEEEEGEEELVGGDYEGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDAMSSAGCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYESAKKEGVYDETEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKAEKEQLAKLTDVFGIPETQLKFIIEAWSQV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0023090 | OsGoSa_08g0023090.03 | Chr08 | 28209941 | 28218201 | + | NAM | ||
| CDS seq | atggactccgacgccgagatgcccatgtccagcgacgaagagatgttggatgacgaggactattacgactacagtgatgacatgggtgaggacgatgatgggagcggcggcgggggcgggggagatagcgatggggaggaggaggaggagggggAggaggagctggtgggcggcgactacgagggccgcgaggcggaggggagcgacgaggtggtgtcccgccgcgagcagagatacattgtattaactgaaaaggatataaatgagcgtcaagaggaagatataggcaagttaagcgatgaatggtttgcggatgaagaaaaagttcgtgatattgttggattacttttaaatggaattgatcttcctaactctagaaagctaacttgtggaatatgttttgaagggtattcttctgatgcgatgagttctgctggttgtgatcatttttattgccatgaatgctgggaaggttatattagtgctgcaataagtgatggtccaggatgtttgtcattgcgatgccctgatccatcttgtggtgctatggttcttcagaacatgattaataagttagctaaagatgatgataaagtgagatatgcacgatttatcttacgtgcatatgttgaagatagcaagaagactaaatggtgtccagctcctgactgtacatgtgcagtggaatttgtcagcgatgggaactatgatgtctcatgcaattgcaaattcagtttttgttggaactgcacggaggaagctcatcgaccagtgaactgtgagactgtttctaggtggatattaaagaatagcgcagaatctgaaaatatgaactggatactggctaattctaagccgtgcccgaaatgcaaacgaccaatagagaaaaaccagggatgcatgcatatgacttgcactccaccttgcaaatttgagttctgctggttatgtctgggttcatgggctgaacatggggagagaactggtggattttacgcttgtaatcgctatgaatcagcaaagaaggagggagtttatgatgagactgaagcaaggagggaaagagccaaaaattcacttgagagatacatgcattactatgagcgctgggcatctaatcagacgtcgaggcagaaggcacaagcagatctgcaaaaggcagaaaaggaacaacttgcaaaattaacagatgtttttggaataccggagacccaactgaagttcataattgaagcttggtcacagattattgaatgcaggcgggtactcaaatggacatatgcttatggctattatctggacgacaaggtcaagagcgaatttttcgagtacctgcaaggtgaagctgagtctggtctggagcgtcttcaccaatgtgctgagaaagacctgcaatcatttttgactgtgagatctgataatactgaacctgcaccatcaattgctgaattcggtgacttccgggtgaagcttgcggggctgacaagtgtgactcggaattattttgagaaccttgttcaagcactggaggctggcttggaggatgtacactctactgcccagggtaccacatcaagcaatgccaccaacatcccctccaagaaagcagtcactaaaggcaaaacaaagaagcagcttcctagaacatcttcggacaactcagatgaaggctggccttgtgagcgctgcacgtttattaacccttcatcggtggatgcatgcagcgtctgcgataagcatagatactag
More
|
|||||||
| Protein seq | MDSDAEMPMSSDEEMLDDEDYYDYSDDMGEDDDGSGGGGGGDSDGEEEEEGEEELVGGDYEGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDAMSSAGCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYESAKKEGVYDETEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKAEKEQLAKLTDVFGIPETQLKFIIEAWSQIIECRRVLKWTYAYGYYLDDKVKSEFFEYLQGEAESGLERLHQCAEKDLQSFLTVRSDNTEPAPSIAEFGDFRVKLAGLTSVTRNYFENLVQALEAGLEDVHSTAQGTTSSNATNIPSKKAVTKGKTKKQLPRTSSDNSDEGWPCERCTFINPSSVDACSVCDKHRY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0023090 | OsGoSa_08g0023090.02 | Chr08 | 28209941 | 28218201 | + | NAM | ||
| CDS seq | atggactccgacgccgagatgcccatgtccagcgacgaagagatgttggatgacgaggactattacgactacagtgatgacatgggtgaggacgatgatgggagcggcggcgggggcgggggagatagcgatggggaggaggaggaggagggggAggaggagctggtgggcggcgactacgagggccgcgaggcggaggggagcgacgaggtggtgtcccgccgcgagcagagatacattgtattaactgaaaaggatataaatgagcgtcaagaggaagatataggcaagttaagcgatgaatggtttgcggatgaagaaaaagttcgtgatattgttggattacttttaaatggaattgatcttcctaactctagaaagctaacttgtggaatatgttttgaagggtattcttctgatgcgatgagttctgctggttgtgatcatttttattgccatgaatgctgggaaggttatattagtgctgcaataagtgatggtccaggatgtttgtcattgcgatgccctgatccatcttgtggtgctatggttcttcagaacatgattaataagttagctaaagatgatgataaagtgagatatgcacgatttatcttacgtgcatatgttgaagatagcaagaagactaaatggtgtccagctcctgactgtacatgtgcagtggaatttgtcagcgatgggaactatgatgtctcatgcaattgcaaattcagtttttgttggaactgcacggaggaagctcatcgaccagtgaactgtgagactgtttctaggtggatattaaagaatagcgcagaatctgaaaatatgaactggatactggctaattctaagccgtgcccgaaatgcaaacgaccaatagagaaaaaccagggatgcatgcatatgacttgcactccaccttgcaaatttgagttctgctggttatgtctgggttcatgggctgaacatggggagagaactggtggattttacgcttgtaatcgctatgaatcagcaaagaaggagggagtttatgatgagactgaagcaaggagggaaagagccaaaaattcacttgagagatacatgcattactatgagcgctgggcatctaatcagacgtcgaggcagaaggcacaagcagatctgcaaaaggcagaaaaggaacaacttgcaaaattaacagatgtttttggaataccggagacccaactgaagttcataattgaagcttggtcacagattattgaatgcaggcgggtactcaaatggacatatgcttatggctattatctggacgacaaggtcaagagcgaatttttcgagtacctgcaaggtgaagctgagtctggtctggagcgtcttcaccaatgtgctgagaaagacctgcaatcatttttgactgtgagatctgataatactgaacctgcaccatcaattgctgaattcggtgacttccgggtgaagcttgcggggctgacaagtgtgactcggaattattttgagaaccttgttcaagcactggaggctggcttggaggatgtacactctactgcccagggtaccacatcaagcaatgccaccaacatcccctccaagaaagcagtcactaaaggcaaaacaaagaagcagcttcctagaacatcttcggacaactcagatgaaggctggccttgtgagcgctgcacgtttattaacccttcatcggtggatgcatgcagcgtctgcgataagcatagatactag
More
|
|||||||
| Protein seq | MDSDAEMPMSSDEEMLDDEDYYDYSDDMGEDDDGSGGGGGGDSDGEEEEEGEEELVGGDYEGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDAMSSAGCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYESAKKEGVYDETEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKAEKEQLAKLTDVFGIPETQLKFIIEAWSQIIECRRVLKWTYAYGYYLDDKVKSEFFEYLQGEAESGLERLHQCAEKDLQSFLTVRSDNTEPAPSIAEFGDFRVKLAGLTSVTRNYFENLVQALEAGLEDVHSTAQGTTSSNATNIPSKKAVTKGKTKKQLPRTSSDNSDEGWPCERCTFINPSSVDACSVCDKHRY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0023090 | OsGoSa_08g0023090.04 | Chr08 | 28210245 | 28217530 | + | IsoSeq | ||
| CDS seq | atgagaagattgttgattgtagttctgttcctaaattatgtggcgttgaagaagagcttccaatggcagcaatggcgtacatgtgtgagtgaaggtccctggttgtatctagattgcagcaacaatgcaggaccgactatggagcgaaggtggatggggtacaaacatgtggtagtctttttttttttttactttctagcctatattatgtacatattagttatggtctgtagttgtgttaatgtggtgggcaatgttctgtttttgttt
More
|
|||||||
| Protein seq | MRRLLIVVLFLNYVALKKSFQWQQWRTCVSEGPWLYLDCSNNAGPTMERRWMGYKHVVVFFFFYFLAYIMYILVMVCSCVNVVGNVLFLF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr08 | 28215399 | 28215660 | + | OsGoSa_08g0023090.01 | OsGoSa_08g0023090.01,OsGoSa_08g0023090.03,OsGoSa_08g0023090.04,OsGoSa_08g0023090.02 | All |
| RI | Chr08 | 28216772 | 28218201 | + | OsGoSa_08g0023090.01,OsGoSa_08g0023090.03 | OsGoSa_08g0023090.01,OsGoSa_08g0023090.03,OsGoSa_08g0023090.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 24.173784 | 55.357090 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0540300 | RBH | 7.310007 | 6.893973 | 23.433567 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g42740 | RBH | 3.938228 | 3.743567 | 5.349873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0540300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023880 | RBH | 4.258168 | 35.889126 | 23.687832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023690 | RBH | 1.631513 | 9.377616 | 10.751934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023670 | RBH | 6.337788 | 26.478653 | 35.787296 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024020 | RBH | 0.703007 | 0.631636 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023680 | RBH | 41.871136 | 61.294468 | 59.942951 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0353400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023510 | RBH | 1.013301 | 2.158639 | 5.603324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0449700 | RBH | 11.075929 | 71.599785 | 30.5163735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022890 | RBH | 0.753196 | 0.604969 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023270 | RBH | 2.252674 | 32.969051 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016300 | RBH | 4.169472 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023920 | RBH | 2.612542 | 1.110973 | 2.009622 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023170 | RBH | 1.183553 | 19.076672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023340 | RBH | 2.619858 | 10.073223 | 8.634802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023530 | RBH | 4.694941 | 70.913528 | 35.328163 |
