Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_05g0010440 | OGI:05033480 | 14/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:12899459-12900260 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggaatccttatgtgaggaattacaaaagaaattttttcaacaaaaatgtgaattaggaaggattggtcgacgaaatatgaatcgaagactgaatcttgatataCctcagaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag
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CDS seq | atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggaaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag
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Protein seq | MGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAIWKHHLLVTARCIGRTDHLIGMKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW |
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Function | DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot:P0C503] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_05g0010440 | OsGoSa_05g0010440.01 | Chr05 | 12899459 | 12900260 | + | NAM | ||
CDS seq | atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggaaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag
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Protein seq | MGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAIWKHHLLVTARCIGRTDHLIGMKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.000000 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g22830 | RBH | 0.000000 | 0.000000 | 0.000000 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010440 | RBH | 3.070162 | 0.000000 | 19.887093 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010470 | RBH | 6.663544 | 35.849171 | 38.743088 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0010380 | RBH | 9.353926 | 39.338890 | 47.946236 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010470 | RBH | 3.090060 | 1.658289 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0010550 | RBH | 419.660706 | 619.772827 | 920.842407 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0189400 | SBH | 224.973236 | 411.417816 | 295.438049 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0010370 | RBH | 27.202806 | 17.617702 | 64.755890 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0197900 | SBH | 285.4397125 | 441.910858 | 295.7529525 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010380 | RBH | 14.119773 | 6.951339 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010320 | RBH | 0.808822 | 15.132270 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019580 | SBH | 108.710701 | 0.0 | 50.421650 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010470 | RBH | 15.839012 | 289.968262 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |