Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_05g0010440 OGI:05033480 | 14/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr05:12899459-12900260
Gene Symbol -
DNA seq

atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggaatccttatgtgaggaattacaaaagaaattttttcaacaaaaatgtgaattaggaaggattggtcgacgaaatatgaatcgaagactgaatcttgatataCctcagaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag

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CDS seq

atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggaaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag

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Protein seq

MGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAIWKHHLLVTARCIGRTDHLIGMKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW

Function DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot:P0C503]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_05g0010440 OsGoSa_05g0010440.01 Chr05 12899459 12900260 + NAM
CDS seq

atgggttcaaatctaaaagaaattctagataatgtttcctaccctgaaattttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagctatttggaaacatcaccttcttgttaccgcgagatgtattggccgtacggatcatttgattggaatgaaatttgaaacgggtatacttgacgatgacgatatgaatcacttgAaaaataaacgtattcgttcggttgcggatctgttacaagatcaatttggactggctcttggtcgtttacaacatgcggttcaaaaaactatccgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttcaacctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaagtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagTtgtttgggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagtcactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactggatctttagctattcatgcgagaattgatcattggtag

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Protein seq

MGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAIWKHHLLVTARCIGRTDHLIGMKFETGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g22830 RBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0010440 RBH 3.070162 0.000000 19.887093
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0010470 RBH 6.663544 35.849171 38.743088
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0010380 RBH 9.353926 39.338890 47.946236
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0010470 RBH 3.090060 1.658289 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0010550 RBH 419.660706 619.772827 920.842407
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0189400 SBH 224.973236 411.417816 295.438049
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0010370 RBH 27.202806 17.617702 64.755890
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0197900 SBH 285.4397125 441.910858 295.7529525
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0010380 RBH 14.119773 6.951339 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0010320 RBH 0.808822 15.132270 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0019580 SBH 108.710701 0.0 50.421650
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0010470 RBH 15.839012 289.968262 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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