Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0017800 | OGI:09036170 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:14413079-14413778 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTAGGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGGagccaagcaagggggacaacgaataggagaaatggaagtttgggctttagaaggatttggtgttgctcatattttacaagagatacttacttataaatctgatcatcttatagctcgccaagaaatacttaacgctacgatctggggaaaacgagtacctaatcacgaggatcctctagaatcttttcgagtgcttgttcgagaactacgatctttggctctagaactgaaccatttccttgtatctcagaagaacttccaggttaatagggaagaagtttga
More
|
||||||||||
| CDS seq | ATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTAGGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGGagccaagcaagggggacaacgaataggagaaatggaagtttgggctttagaaggatttggtgttgctcatattttacaagagatacttacttataaatctgatcatcttatagctcgccaagaaatacttaacgctacgatctggggaaaacgagtacctaatcacgaggatcctctagaatcttttcgagtgcttgttcgagaactacgatctttggctctagaactgaaccatttccttgtatctcagaagaacttccaggttaatagggaagaagtttga
More
|
||||||||||
| Protein seq | MPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPLMRKSTDALLGPIHLLHNNPLEEGAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPLESFRVLVRELRSLALELNHFLVSQKNFQVNREEV |
||||||||||
| Function | DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot:P0C503] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0017800 | OsGoSa_03g0017800.01 | Chr03 | 14413079 | 14413778 | + | NAM | ||
| CDS seq | ATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTAGGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGGagccaagcaagggggacaacgaataggagaaatggaagtttgggctttagaaggatttggtgttgctcatattttacaagagatacttacttataaatctgatcatcttatagctcgccaagaaatacttaacgctacgatctggggaaaacgagtacctaatcacgaggatcctctagaatcttttcgagtgcttgttcgagaactacgatctttggctctagaactgaaccatttccttgtatctcagaagaacttccaggttaatagggaagaagtttga
More
|
|||||||
| Protein seq | MPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPLMRKSTDALLGPIHLLHNNPLEEGAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPLESFRVLVRELRSLALELNHFLVSQKNFQVNREEV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 55.877312 | 93.908096 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0403100 | SBH | 1.513158 | 1.699405 | 3.725279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16820 | SBH | 17.708506 | 17.603193 | 5.941586 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0403100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015540 | SBH | 5.019928 | 19.440001 | 29.246801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010480 | SBH | 3.915436 | 24.427906 | 29.392593 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015580 | SBH | 8.204471 | 25.880529 | 44.169701 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015440 | SBH | 4.243963 | 1.646868 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027610 | SBH | 20.661768 | 50.553898 | 59.976635 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0189900 | SBH | 95.130001 | 38.060198 | 43.780262 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027350 | SBH | 1.433853 | 2.582795 | 5.029388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0225200 | RBH | 115.8236505 | 76.491562 | 76.39603 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010410 | SBH | 2.980701 | 0.498440 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027690 | SBH | 1.699903 | 37.906574 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010470 | RBH | 67.129936 | 134.521652 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0020030 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027460 | SBH | 2.048284 | 36.808041 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027480 | SBH | 1.657077 | 10.825590 | 9.600111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
