Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0004190 | OGI:02009340 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:2907892-2912761 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacttcagaagttatagcagctgcaaaatccattgaagcaaatctccttacagagtactgactactgagtggtgctgaaaccaaagaaaatgctagtggggaaaggatgcctccacctctatttacacggtgggtacagaattagatgtcaccatgggcactacagttttaggtcctgtctgtttttctgccttgtaaaccagcagcagactgaggaacaacaaaacttgtgaattgtaatgctactactccaaatcccttgcaaaaaaaaaaaaatctgcattagtcactaattttggaagtctcgtgtcactcgtgtacccttcagcagttcagctagttctccacgacggaattcatttctaccacacaaacattagctggcaaaaaaatcaccacagcagccaagaaactggatgtggttactccaaatccctgtacttcagaacatcaatcttgtccaaatcatatgcctgacaaatcctcgaaatggtatcacaatccaatccttcattcaattttctgctctcaaggaacccatcaagcttcttcgaaggctgcaaattctattgaagaaataacacaataagtatttCttttttcaaaaaaaaaaaaacaaactgcacatacagtaaatatgatatgatatatatactgtcaaagcctaacaatgtagaaggaattatcagtaggctagagtcacaagccactattgcctaacacccccaacaaccactattttcacctaactgatgaaaggaccatgtatgagaggaacacatattacaaacaagatcatcttatatgatacaaataatggaactcccctcccccatttcctccatagtagctccataaaatgttgtggacatatataaatcccgtgaggtagaggatctcaagttatgttgcagtaaaaacaatatcagattcagattccaacagcaaaattacaacatgttgtggcaaaaattgttaaggtgactagttggagttgtgaagtaactggcaacctttttctgtgagccacaatgtacagatcctccgaattgagattacacatagatgcataactggctgcacagacagcctaatcattgttgtatataagtcaggcaagcttcaatgtgcccatcattcatcagatgtataaaaagttatattatataaaaaccatataaagatatattataatagctggcttcaatgattgcttaatgattgcaacatgaagtcaggcattccagaaagtgctcaccagttgtatgcaaatggagtaactattaaataatcaataactacaaataaatccatccatagtcgtggccacccatgtgtatgtgcaggttgggcatacaatgcatgcagttatgcaagggtacactgacatgtcataaacctcaaggtcaaacaaactgtgcctagcgggtaaaacaagccagcATatatgcaactgtgcaagtagataaattcttttaattggcatatcctggcttaacttgtttctgcattatcccatgcggccacatgtcagAaaaggttgttcattgccttcgggtacatttgcatactagaggcagtaggtatgtgatagtaacacagattaactacctcaactcttcaagtatctgatctagaactgatgtagtatgtccgatctacaactctagttgaattaacagaaaataatcaagatgatgactccggaggtccataaatgtctcggtccaaaacttccctcaaaatacaacaatctgaaggtttaactcattttgaattgagacaacttacccaaggagcatattgagtgttttcacaagggttgccatcctttctggaactcatctctttctgcttctcaagaaggattttccattgatctgagctgtcagaaactaacaactggagcctctcacttccctatgtcaaagtaagtatcaaacataccttagcaaacgccacaccacgacagagaggagtttgaacaaaaaaaaaatccaagagctgaaaactctataataactgggccatctaacaaacctgcagagctctccaatgagaataagcacgaaacagcacccagaaaaatggtatgtttggcaaaggcagtacctgcaaatgaataagtaggtgtataagaatgaatgtcatctcaccatagcatagtgagttaagtacggattgcacgcattagaagttttcataccaacatgtatactctatttcacaatcttttttctgctatgaatcctatggggtaaagtacaacaacacaagaaggcaacatacaatcacatcctttgatcaagtagattatgatactctggttaatgattaaaacataagaacctaccgggtcatcaggattcaagtaatgtgtgctaggttataaactagacatcactgaagcacaatctcacaaaattataattatattatatggctcattaactgaatcagaagtgtaaattatacctcccacatatgtaaaaatcccttatctttaatgtgtaaatgagctcatcatatttttcttaatttgatgtactaagttgaaaagtagaccaaacacaagcctcaactaatattgtgcgcaatctagcaaaggcagcaagcaaaaataaagatctaataatctttttagtttggtcaataattgatagcatcgcaaaatgaaaaaaaaaatcccttcaaagtacaacaaactgatcccactgaaatcactgttgcaaattgctagccaacaccattttttccaaagcaaatgaatatagacttaccatgaaaacacttgtaactggaagcaaacaaactgagccataaagaaatttcctgtgaactgatgcacccctggttctcagaaacattgcagaaacagaagggtgaggaaagatataaattgagctatacagtaacaaattgttggagcaggtccatcaaacactcacctgacagcaatatgccgcaaccgtcgacgcacaagacgaggatttatactgcaattaaagctaggattcagaaataatcttgaatagacataaaataagacatgagtaagaaaattgccgaccaactctgtctggtgatgcttgatagtgccagagcgattcataaagctcaatagctaacttctatacaaaaacaagcatatgcatgaggctttccaagtaacttacgaagccagtaaaagaatagttcgtgtgaacaagtcttttagagcttcttctgtgcaacaacaggcactgacacagaatctaccattttacagttacggagcacgcacagaggttcaaaaaacaagcagctacaagctgtgaagaattaagacatacatttttacagcagacttacaatacgcaaatcatgcaatttcttaggccctgtttggtagagctccaactcctaaatttagctccaggagttgggtctggaatggacccagctccacctctctagttcattttgtgagagcgctccacccagctccgctcccatttcaggtggagctgaaactgtttggctgagctccagctccaggagaggtggagctggagctgtgccaaacaggcccttagaatagaaggactttcaactactttgtcccaacaaagttcttgaataacagctatgaacagagaaagctggtgtgaattgtgtattggaacggaatgatagagatgtcagagtcaatgctcaaacttgatcagatataacccatgtatcactacatgaagcatactgaaacttgtatatctaaattagtatctgctcagacattctaatagttccattcattggcgacaatgtgtatccgttaatgataaattgctattgcaagtaagctaagccactaacgacagatactgtatgatttcctgcacagaggctcagagccttaggaaatattcatcacaacaaggacccaaatagttgaatatcccaatcgatttgactatcaaactaagaataacaacaaaggtgaaacgacacaaattgcacgcacattttatcaaacacaaacaccaaactcataagcagagctcaccttgccggatgcacgatctcgagtagggagacgtccttggtcaccgacttgagcagcacctccgacggccgcacccgcgagagcagcttcagcccgaagctacaccacaacaaagcaaaaaaaaaaggggagcacacccaacgactcagcatctcgccatttccgactccacaggcgccacccgccactaagcaatccccaaacccttacactcccgacctgtggatccggttcttcatcgacccctccggcgcgctcccgaacccgatccacgcccggttcatctgcggcagccaaaaccccaccatcagaaaccccccaaatgcgggcggcatgcgagaatgcagttaaggcgagagacgagaaggcgctccccgtcgagtcgagcaccttgtccgcgacgaagtcgacgacggcctccgcgttctccgacgccgtgcggcccccgccggcgatgccgcgccagaggtccttgacggttggcggcggtgggggtagtagggcgcccccatcgccgcccccgcaagcggcggcgggcgcggtggcgcgcgggctggcgaagcaccaggcccttcccttgacggggaagacgacgacgcgggcctgcatcgcagacggcggcgtggagaggtggaggtcgtcgtcggcggcggcggcggcgaggcggaggcggaggcggaggcggaagagagtggaggggttcggtcgaggcggctagcctagtgtactagtctagtgtgatgactcccacgccgcggcggcggggatctcagccgttggatgcggatctgacggttggatgtgcctataatttaggagtatact
More
|
||||||||||
| CDS seq | atgaaccgggcgtggatcgggttcgggagcgcgccggaggggtcgatgaagaaccggatccacagcttcgggctgaagctgctctcgcgggtgcggccgtcggaggtgctgctcaagtcggtgaccaaggacgtctccctactcgagatcgtgcatccggcaagtataaatcctcgtcttgtgcgtcgacggttgcggcatattgctgtcaggggtgcatcagttcacaggaaatttctttatggctcagtttgtttgcttccagttacaagtgttttcatggtactgcctttgccaaacataccatttttctgggtgctgtttcgtgcttattctcattggagagctctgcagggaagtgagaggctccagttgttagtttctgacagctcagatcaatggaaaatccttcttgagaagcagaaagagatgagttccagaaaggatggcaacccttgtgaaaacactcaatatgctccttggaatttgcagccttcgaagaagcttgatgggttccttgagagcagaaaattgaatgaaggattggattgtgataccatttcgaggatttgtcaggcatatgatttggacaagattgatgttctgaagtacagggatttggagtaa
More
|
||||||||||
| Protein seq | MNRAWIGFGSAPEGSMKNRIHSFGLKLLSRVRPSEVLLKSVTKDVSLLEIVHPASINPRLVRRRLRHIAVRGASVHRKFLYGSVCLLPVTSVFMVLPLPNIPFFWVLFRAYSHWRALQGSERLQLLVSDSSDQWKILLEKQKEMSSRKDGNPCENTQYAPWNLQPSKKLDGFLESRKLNEGLDCDTISRICQAYDLDKIDVLKYRDLE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0004190 | OsGoSa_02g0004190.01 | Chr02 | 2907892 | 2912761 | - | NAM | ||
| CDS seq | atgaaccgggcgtggatcgggttcgggagcgcgccggaggggtcgatgaagaaccggatccacagcttcgggctgaagctgctctcgcgggtgcggccgtcggaggtgctgctcaagtcggtgaccaaggacgtctccctactcgagatcgtgcatccggcaagtataaatcctcgtcttgtgcgtcgacggttgcggcatattgctgtcaggggtgcatcagttcacaggaaatttctttatggctcagtttgtttgcttccagttacaagtgttttcatggtactgcctttgccaaacataccatttttctgggtgctgtttcgtgcttattctcattggagagctctgcagggaagtgagaggctccagttgttagtttctgacagctcagatcaatggaaaatccttcttgagaagcagaaagagatgagttccagaaaggatggcaacccttgtgaaaacactcaatatgctccttggaatttgcagccttcgaagaagcttgatgggttccttgagagcagaaaattgaatgaaggattggattgtgataccatttcgaggatttgtcaggcatatgatttggacaagattgatgttctgaagtacagggatttggagtaa
More
|
|||||||
| Protein seq | MNRAWIGFGSAPEGSMKNRIHSFGLKLLSRVRPSEVLLKSVTKDVSLLEIVHPASINPRLVRRRLRHIAVRGASVHRKFLYGSVCLLPVTSVFMVLPLPNIPFFWVLFRAYSHWRALQGSERLQLLVSDSSDQWKILLEKQKEMSSRKDGNPCENTQYAPWNLQPSKKLDGFLESRKLNEGLDCDTISRICQAYDLDKIDVLKYRDLE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.358875 | 9.764962 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0152600 | RBH | 0.792359 | 1.295966 | 3.237657 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05870 | RBH | 0.536301 | 0.868695 | 0.830615 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0152600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004060 | RBH | 0.274473 | 1.898795 | 1.928575 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004150 | RBH | 0.411660 | 1.731653 | 2.636811 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004070 | RBH | 0.0 | 4.760912 | 4.726707 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003920 | RBH | 0.159907 | 0.290295 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004060 | RBH | 4.495487 | 9.462970 | 5.024572 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0049500 | RBH | 7.4972355 | 23.227772 | 24.0218715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003980 | RBH | 0.160191 | 0.539995 | 0.614727 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0051600 | RBH | 7.067765 | 26.346938 | 37.532286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004140 | RBH | 0.167691 | 0.278458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003930 | RBH | 0.923737 | 4.848436 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004160 | RBH | 0.620584 | 0.871824 | 0.765982 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003980 | RBH | 0.190583 | 8.246502 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004010 | RBH | 0.306363 | 1.039511 | 0.947463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003960 | RBH | 0.000000 | 14.424315 | 6.795965 |
