Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_Ung0000670 | OGI:09036150 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | ChrUN-Ctg70:190128-191504 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgaaggatacctgggtcgagttgttaactcattagcccgcccgatcgacggaaaaggggagatcccatcttctgaaacccggttgattgaatctggtgcaccaggcatcatctctcgtcgctccgtttatgagccactgcaaactggtcttctagcagttgatgctatgatcccaattggccgtgggcagcgtgagcttatcattggagaccgccaaaccggtaagactgccgtagctatagacaccattctaaaccaaaaagggaagggagttgtgtgtgtctatgtagccattggtcagagagcttcctctattgctcaagtattgaacacccttcaagagcgtggagcgatggaatacacggttattgtagccgcgccagctgactcaccagcgactctgcagtatcttgctccgtacaccggtgcagctattgctgaatacttcatgtacaatgggcgccacacccttgccatctacgatgacttgtccaaacaggcccaagcttatcgtgagatgtcactgttgctacgtcgtcctcccggtcgtgaggcatacccaggtgatgtattctacttacactcccgtcttttggaacgagctgcaaaacttagtgacaaattaggtggtggaagcatgacggcattgccgatcgtagaaacacaagaaggggacgtttctgcttacatcccaacaaatgttatctcgatcaccgatggacagatctttttgtcaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| CDS seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgaaggatacctgggtcgagttgttaactcattagcccgcccgatcgacggaaaaggggagatcccatcttctgaaacccggttgattgaatctggtgcaccaggcatcatctctcgtcgctccgtttatgagccactgcaaactggtcttctagcagttgatgctatgatcccaattggccgtgggcagcgtgagcttatcattggagaccgccaaaccggtaagactgccgtagctatagacaccattctaaaccaaaaagggaagggagttgtgtgtgtctatgtagccattggtcagagagcttcctctattgctcaagtattgaacacccttcaagagcgtggagcgatggaatacacggttattgtagccgcgccagctgactcaccagcgactctgcagtatcttgctccgtacaccggtgcagctattgctgaatacttcatgtacaatgggcgccacacccttgccatctacgatgacttgtccaaacaggcccaagcttatcgtgagatgtcactgttgctacgtcgtcctcccggtcgtgaggcatacccaggtgatgtattctacttacactcccgtcttttggaacgagctgcaaaacttagtgacaaattaggtggtggaagcatgacggcattgccgatcgtagaaacacaagaaggggacgtttctgcttacatcccaacaaatgttatctcgatcaccgatggacagatctttttgtcaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| Protein seq | MAGELLEFEDGTVGIALNLESKNVGAVLMGEGLAVQEGSSVRGTGKVAQIPVGEGYLGRVVNSLARPIDGKGEIPSSETRLIESGAPGIISRRSVYEPLQTGLLAVDAMIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGKGVVCVYVAIGQRASSIAQVLNTLQERGAMEYTVIVAAPADSPATLQYLAPYTGAAIAEYFMYNGRHTLAIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDKLGGGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNAGVRPAINVGISVSRVGSAAQPKAMKKVAGKLKLELAQFAELEAFSQFASDLDQATQNQLARGQRLRELLKQAQASPLSVEDQVASIYAGTNGYLDKFQVEQVRPFLIGLRQFLAARKAEYGEIIRSTNTFDDKAEKLLVEAIKEYSEEFLASAK |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P56294] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_Ung0000670 | OsCMeo_Ung0000670.01 | ChrUN-Ctg70 | 190128 | 191504 | + | NAM | ||
| CDS seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgaaggatacctgggtcgagttgttaactcattagcccgcccgatcgacggaaaaggggagatcccatcttctgaaacccggttgattgaatctggtgcaccaggcatcatctctcgtcgctccgtttatgagccactgcaaactggtcttctagcagttgatgctatgatcccaattggccgtgggcagcgtgagcttatcattggagaccgccaaaccggtaagactgccgtagctatagacaccattctaaaccaaaaagggaagggagttgtgtgtgtctatgtagccattggtcagagagcttcctctattgctcaagtattgaacacccttcaagagcgtggagcgatggaatacacggttattgtagccgcgccagctgactcaccagcgactctgcagtatcttgctccgtacaccggtgcagctattgctgaatacttcatgtacaatgggcgccacacccttgccatctacgatgacttgtccaaacaggcccaagcttatcgtgagatgtcactgttgctacgtcgtcctcccggtcgtgaggcatacccaggtgatgtattctacttacactcccgtcttttggaacgagctgcaaaacttagtgacaaattaggtggtggaagcatgacggcattgccgatcgtagaaacacaagaaggggacgtttctgcttacatcccaacaaatgttatctcgatcaccgatggacagatctttttgtcaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| Protein seq | MAGELLEFEDGTVGIALNLESKNVGAVLMGEGLAVQEGSSVRGTGKVAQIPVGEGYLGRVVNSLARPIDGKGEIPSSETRLIESGAPGIISRRSVYEPLQTGLLAVDAMIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGKGVVCVYVAIGQRASSIAQVLNTLQERGAMEYTVIVAAPADSPATLQYLAPYTGAAIAEYFMYNGRHTLAIYDDLSKQAQAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDKLGGGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNAGVRPAINVGISVSRVGSAAQPKAMKKVAGKLKLELAQFAELEAFSQFASDLDQATQNQLARGQRLRELLKQAQASPLSVEDQVASIYAGTNGYLDKFQVEQVRPFLIGLRQFLAARKAEYGEIIRSTNTFDDKAEKLLVEAIKEYSEEFLASAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16740 | SBH | 366.193787 | 344.205444 | 44.800987 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036470 | SBH | 123.080765 | 37.183609 | 200.062256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018220 | SBH | 726.383789 | 85.930038 | 597.339661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_Ung0000450 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017970 | SBH | 1652.038818 | 120.820091 | 1315.958740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0300300 | SBH | 4539.07959 | 422.9936675 | 612.403595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021390 | SBH | 42.286999 | 1.425343 | 17.880873 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017990 | SBH | 747.249451 | 6.285062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004792 | SBH | 565.966614 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018190 | SBH | 4714.895508 | 360.585022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019590 | RBH | 428.789459 | 0.0 | 177.504990 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036910 | SBH | 24.298254 | 10.598877 | 29.336964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004650 | SBH | 2354.627930 | 984.945374 | 3754.520264 |
