Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_Ung0000450 | OGI:99002160 | 1/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | ChrUN-Ctg70:2105-3476 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgaaggatacctgggtcgagttgttaactcattagcccgcccgatcgacggaaaagggagatcccatcttctgaaacccggttgattgaatctggtgcaccaggcatcatctctcgtcgctccgtttatgagccactgcaactggtcttctagcagttgatgctatgatcccaattggccgtgggcagcgtgagcttatcattggagaccgccaaaccggtaagactgccgtagctatagacaccattctaaaccaaaagggaagggagttgtgtgtgtctatgtagccattggtcagagagcttcctctattgctcaagtattgaacacccttcaagagcgtggagcgatggaatacacggttattgtagccgcgccagctgactcaccagcgactctgcagtatcttgctccgtacaccggtgcagctattgctgaatacttcatgtacaatgggcgccacacccttgccatctacgatgacttgtccaaacaggcccaagcttatcgtgagatgtcactgtttgctacgtcgtcctcccggtcgtgaggcatacccaggtgatgttctacttacactcccgtcttttggaacgagctgcaaaacttagtgacaaattaggtggtggaagcatgacggcattgccgatcgtagaaacacaagaagggacgtttctgcttacatcccaacaaatgttatctcgatcaccgatggacagatctttttgtcaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| CDS seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| Protein seq | MAGELLEFEDGTVGIALNLESKNVGAVLMGEGLAVQEGSSVRGTGKVAQIPVGDIFNAGVRPAINVGISVSRVGSAAQPKAMKKVAGKLKLELAQFAELEAFSQFASDLDQATQNQLARGQRLRELLKQAQASPLSVEDQVASIYAGTNGYLDKFQVEQVRPFLIGLRQFLAARKAEYGEIIRSTNTFDDKAEKLLVEAIKEYSEEFLASAK |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P56294] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_Ung0000450 | OsCMeo_Ung0000450.01 | ChrUN-Ctg70 | 2105 | 3476 | + | NAM | ||
| CDS seq | atggctggggagctcctcgaatttgaggatggaactgttggcatcgcgctcaaccttgagtcgaaaaacgtcggggccgtgctcatgggtgagggcctagccgtgcaggaagggagttctgtacgaggaaccggcaaggttgcacagattcccgtaggtgatatcttcaatgctggtgtgcgcccagcaatcaacgtaggtatctcagtttctcgagttggatctgcagctcaaccgaaggcaatgaagaaggtagctggtaagctgaagctagaactggctcaatttgcagagttggaggcattttcgcagtttgcctctgatttggaccaagctacacagaatcagcttgctaggggtcagcgcttgcgtgaacttttgaaacaagcgcaagcttccccactttcagtggaagatcaggtcgctagcatctatgctggaacaaacggctatctcgacaagtttcaagtggagcaggtacgacctttccttatagggttgcgccaattcttagcagcgagaaaggcggagtatggggagattatacgctcaactaacacctttgatgacaaagctgagaaattgctcgtagaagccattaaggagtattcagaagagttcttggcgagtgccaagtag
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| Protein seq | MAGELLEFEDGTVGIALNLESKNVGAVLMGEGLAVQEGSSVRGTGKVAQIPVGDIFNAGVRPAINVGISVSRVGSAAQPKAMKKVAGKLKLELAQFAELEAFSQFASDLDQATQNQLARGQRLRELLKQAQASPLSVEDQVASIYAGTNGYLDKFQVEQVRPFLIGLRQFLAARKAEYGEIIRSTNTFDDKAEKLLVEAIKEYSEEFLASAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16740 | SBH | 366.193787 | 344.205444 | 44.800987 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006060 | SBH | 977.347717 | 246.369232 | 1538.183105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_Ung0000670 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019770 | SBH | 318.028931 | 0.0 | 121.187912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
