Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0008150 | OGI:10038750 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:11599773-11602895 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCGGAGGAGACGAGCTGAAGCTGCTGGGCACATGGCCGAGCCCGTTCGTCACCAGAGTGGAGCTCGCCCTCGCCCTCAAGGGCCTCAGCCACGAGTACGTCACGCAGGACCTCGTCGGCAAGAGCGACCTCCTCCTCGCCTCTAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACAACGGCAAACCTATATGCGAGTCGCGGATCATATTAGAGTACATCGATGAGGTCTTCCCCGTCGATGGTGCCGTCCTCCTCCCCACCGACATCTATGACCGGGCCATCGCTCGTTTTTGGGCTGCCTACATCGATGACAAGGTAGGTATCTCTAGTAATAACTCCCAACATTCTAAAATAAACCTTTACCTTTATATAAATCTGAACATGCGTGTAGCTGTATTGTAGAACGAAGGGAGCTGGTAATCTATGTATTATAGATTCATAGTTGGTCCAAGCCTTTCTAATCTCTCGTGTAAATGGTGATATCACTCATGCGATGGCTGACTATGTGCATGCAGTACAGTTCGTCACGCCATGGACGCCGATGTTCAGGGGGAAGACGGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAGACCCTAGAGCAAGCCTTGAAGGATTGCTCAAAGGGGAATCCCTTCTTCGGTGGCGACACCGTTGGGCTCGTGGATGTCACATTGGGTGCCCATATTCCGGGGGTGAGGGCGATCGAGGTGCTCACCGGTGCTAAGATCTTCGACGCCGCCATTACCCCCCTCCTGGTCTTGTGGGCGGAGAGCTTCGGCGAGCTTGACGCCGCCAAGAAGGTGTTGCCGGACGTTGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCGCAGTGGGCTGCCGCTGGTGCTGAGGCGGCGGCGGATTCAAATTAAGAGCTGATTGGCCGGCATTGCTACGTAGTAAACTCCCGTTGTTGCTTTGGAGGAAATAATGTGCTTGTTGCTGAAAAGTAGTGGAGACCAGAGAGATTACCTAGTTGCTTTATTTGACTTTGGTTGTGAGTTTAGAATACATGTTGTTGCTTGGTGACTTGGTACGTTGTGAGTTAGAAAAGAATTATGAAAATCAACATTATTGTGTTAGTTACTTTGGACCTCATTTTCTCTTATTCTCAAACTCTAGCTCAGTGTTCTTTAGTCTTCGGGCCTGTTCACTTTGATGCCAAAAAAAACCTTACCAAATTTTGGTAAAGTTGCTAAAAAAGTGGCTACATTTAGTTTGCTGCCAAATTTTTGAAACTATATAAGAAACCCTGTCAAAATTTTGGCAATGCCAAAACTTGGTAAGGTTTTTTTTGGCGTCAAAGTGAACAGGCCCTTCATTACCACGCTTCCTAATTAATGTCCTCCACATACTCTCTTCTTCTTAAAAAAAAAGCAACCTAAAGAGGAATATGATACATTCTAAATTCCTAATACAATAAATCTAGACATACAGTATACTCTGATGTAGTATTAGGCTGGGTTTCTTTGGGATTTTTGGGACGGAGAGAGTACTTAGAGATTTAGAGGCCTTAAATTGCAGCCACTCACAACGCACGCAAACTCACTTACCACTGAAAGTATAAAGCCGTTAAAACCTGGAGGAGAGTCGAACCCAGGACCTAAGGTGCTACTGAGACTCTTGTAACCACTAGGCTACAGGCCCTTTCGCTTTTGAAACACGTTACTTCAATTATTAATCAAAAGTTATATTAGGTGTTGCTTTTTTTTTTAAAAAAAATATGGGCCCATTATATTTGGGACGGATGGAGCCCAGAAGAGTGTATTTTTAAGTTGAAAAACGTGATTTTCAACTTAAAAATCGTGAATTTATAATCTCGGATATTGTGGATTGAAACTACCCGGGAGAATTAACAGTTCATTTCAGTCACGCAGATGCAAACATACAAAGTCCTGATCTTTTAAGGAGGCGACGGGAGCAGCGCCTTGACCAGCCAGGTTTGTTCCTCCAAAACTCGCTCAGTGCACAAATAATACAAGTATTTTTATGTTGTTTAAGTCAAGATTAAGGTTTACGAGATGAATGTGGACCATGGAGAAAATTATTCTGAAAATGTGACTCGATTATCTATAGCATATGTGTTCAGTATGTCGTCCACAGTGCTTGACATGCCTTTTTTTGAGGTTAGACTAGAATTTAACTGCTGAATCAGTTGTTCATTGGCAACTGTTCTGAATCCTCTAGTTTTTCCTTCTCTCTGTACTTTGGACTTGCTGCTACTTATGTTGGGTTGTTGCTGATTAAGTTGGAGTTGGGATTGCTAACATTTTCATAAAAGGAATAACGGGCAATTACGCAAACAACATTTTGTAGTAATCATTTTCCAGAAAGCGAACTGACAACTAACATTTTCATAAAAGGAATAACGGGCGATTACGCAAACAACATTTTCTAGGTTGACAACTGACATGCACCCATATTTTGGTATGGTAAAATTATAAAAACTTCACAACGTAATAGATGTTGGAAAATGTTCAATTGCCAAAAGTAAAGATCATCCTAATAGTACAAATACAACACATTTTATTCTGTAATGTAATTTTCACTTCTTTTTATTTAATAGTGCAAATTTTATCTTTTTTACACAAATTTCTGCACATGCAAATGTTCCAGTATGTTTTACATCGATGATTCTTTAGTTTTAGGGTGTGCACACATGAATAGACACAAATAACTGCACATGTAGCTAGATGCAAAATATCCACTTAAACTTTAGAACCAGTAAATGTTTTACTCTGATCAGCGTAATGTGCTTGTAAGAAAATTCACTGCAACTAGCTGAGAACTTCCCTTTCCAAACTTTCAAGGATCCTAATGGAAGCATTTATTTCACAGGAGAGCACACAAGCGAACACTACAATGGCTATGTCCATAGAACATTTCTTGCAGGAAAAAGGTTAGTTCTATTTTAGATTAGATGGGACATTTCCATTCTGTGATTCTAATTCTATTGCATATTTGTTTCTAAGCTACATTTCTACACTCTGCAGACATCTTGATCAAATATTGCAACTTTGCAAGAAAAGAAGTGCATATACAGAAATACCATGTCCAGGGCAAGTGTGATTAA
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| CDS seq | ATGGCCGGAGGAGACGAGCTGAAGCTGCTGGGCACATGGCCGAGCCCGTTCGTCACCAGAGTGGAGCTCGCCCTCGCCCTCAAGGGCCTCAGCCACGAGTACGTCACGCAGGACCTCGTCGGCAAGAGCGACCTCCTCCTCGCCTCTAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACAACGGCAAACCTATATGCGAGTCGCGGATCATATTAGAGTACATCGATGAGGTCTTCCCCGTCGATGGTGCCGTCCTCCTCCCCACCGACATCTATGACCGGGCCATCGCTCGTTTTTGGGCTGCCTACATCGATGACAAGTTGGTCCAAGCCTTTCTAATCTCTCGTGTAAATGGTGATATCACTCATGCGATGGCTGACTATGTGCATGCAGTACAGTTCGTCACGCCATGGACGCCGATGTTCAGGGGGAAGACGGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAGACCCTAGAGCAAGCCTTGAAGGATTGCTCAAAGGGGAATCCCTTCTTCGGTGGCGACACCGTTGGGCTCGTGGATGTCACATTGGGTGCCCATATTCCGGGGGTGAGGGCGATCGAGGTGCTCACCGGTGCTAAGATCTTCGACGCCGCCATTACCCCCCTCCTGGTCTTGTGGGCGGAGAGCTTCGGCGAGCTTGACGCCGCCAAGAAGGTGTTGCCGGACGTTGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCGCAGTGGGCTGCCGCTGACATCTTGATCAAATATTGCAACTTTGCAAGAAAAGAAGTGCATATACAGAAATACCATGTCCAGGGCAAGTGTGATTAA
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| Protein seq | MAGGDELKLLGTWPSPFVTRVELALALKGLSHEYVTQDLVGKSDLLLASNPVHKKVPVLIHNGKPICESRIILEYIDEVFPVDGAVLLPTDIYDRAIARFWAAYIDDKLVQAFLISRVNGDITHAMADYVHAVQFVTPWTPMFRGKTEEEKAEGIKQILAAVETLEQALKDCSKGNPFFGGDTVGLVDVTLGAHIPGVRAIEVLTGAKIFDAAITPLLVLWAESFGELDAAKKVLPDVDGMVEYVKRRQAQWAAADILIKYCNFARKEVHIQKYHVQGKCD |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0008150 | OsCMeo_10g0008150.01 | Chr10 | 11599773 | 11602895 | + | NAM | ||
| CDS seq | ATGGCCGGAGGAGACGAGCTGAAGCTGCTGGGCACATGGCCGAGCCCGTTCGTCACCAGAGTGGAGCTCGCCCTCGCCCTCAAGGGCCTCAGCCACGAGTACGTCACGCAGGACCTCGTCGGCAAGAGCGACCTCCTCCTCGCCTCTAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACAACGGCAAACCTATATGCGAGTCGCGGATCATATTAGAGTACATCGATGAGGTCTTCCCCGTCGATGGTGCCGTCCTCCTCCCCACCGACATCTATGACCGGGCCATCGCTCGTTTTTGGGCTGCCTACATCGATGACAAGTTGGTCCAAGCCTTTCTAATCTCTCGTGTAAATGGTGATATCACTCATGCGATGGCTGACTATGTGCATGCAGTACAGTTCGTCACGCCATGGACGCCGATGTTCAGGGGGAAGACGGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAGACCCTAGAGCAAGCCTTGAAGGATTGCTCAAAGGGGAATCCCTTCTTCGGTGGCGACACCGTTGGGCTCGTGGATGTCACATTGGGTGCCCATATTCCGGGGGTGAGGGCGATCGAGGTGCTCACCGGTGCTAAGATCTTCGACGCCGCCATTACCCCCCTCCTGGTCTTGTGGGCGGAGAGCTTCGGCGAGCTTGACGCCGCCAAGAAGGTGTTGCCGGACGTTGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCGCAGTGGGCTGCCGCTGACATCTTGATCAAATATTGCAACTTTGCAAGAAAAGAAGTGCATATACAGAAATACCATGTCCAGGGCAAGTGTGATTAA
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| Protein seq | MAGGDELKLLGTWPSPFVTRVELALALKGLSHEYVTQDLVGKSDLLLASNPVHKKVPVLIHNGKPICESRIILEYIDEVFPVDGAVLLPTDIYDRAIARFWAAYIDDKLVQAFLISRVNGDITHAMADYVHAVQFVTPWTPMFRGKTEEEKAEGIKQILAAVETLEQALKDCSKGNPFFGGDTVGLVDVTLGAHIPGVRAIEVLTGAKIFDAAITPLLVLWAESFGELDAAKKVLPDVDGMVEYVKRRQAQWAAADILIKYCNFARKEVHIQKYHVQGKCD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0008150 | OsCMeo_10g0008150.02 | Chr10 | 11599783 | 11600914 | + | IsoSeq | ||
| CDS seq | AGACGAGCTGAAGCTGCTGGGCACATGGCCGAGCCCGTTCGTCACCAGAGTGGAGCTCGCCCTCGCCCTCAAGGGCCTCAGCCACGAGTACGTCACGCAGGACCTCGTCGGCAAGAGCGACCTCCTCCTCGC |
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| Protein seq | RRAEAAGHMAEPVRHQSGARPRPQGPQPRVRHAGPRRQERPPPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 11600096 | 11600297 | + | OsCMeo_10g0008150.01 | OsCMeo_10g0008150.01,OsCMeo_10g0008150.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.588186 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0368100 | SBH | 0.0 | 0.000000 | 0.656357 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22310 | RBH | 0.0 | 0.000000 | 0.527153 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0368100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008210 | RBH | 0.0 | 4.183000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008260 | RBH | 0.0 | 1.236097 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008110 | RBH | 0.742108 | 0.982144 | 0.583345 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018180 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0199000 | RBH | 0.035179 | 0.881868 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0212900 | RBH | 0.125444 | 0.0798195 | 0.0407925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017590 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017890 | SBH | 1.660139 | 16.673845 | 4.585860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008290 | RBH | 0.0 | 0.0 | 0.0 |
