Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0013620 | OGI:01056490 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:16809809-16811776 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggttttcccttcaggaacaaacataaattttgcacgtctactcttgttagtagaagtagtagaggagaaatcgttgaggaagatttttcatttgaatcatgcaaaaaagttttcttagtttttagtatagttatttaaagaatagataaaaataagattgcgtccaataggatttgaacctataccaaaggtttagaagacctgtcctatccattagacaatggacgcttttttcatattttcttctttcttttcattttttatcggaccaagagaaaaaactgttagaccaaaactcttttaggaaagaaaaacaaatgcatatacaaatgtatgatgcatatatcataaagaaggaatatggagcgggtagtgggaatcgaacccgcaaccccacggttatgagcctcattagactgtagtaaaaccaaattggactataggatacatctatctcttgggcaaccaattaggtaaatcacaaattaaccaaatatgtagttatgtacatagtcatatttacattcctaataaatgtagattctttttattatctatgaggttcatagatagatatttaggatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgtatatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| CDS seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggaacaaacataaattttgcacgtctactcttgatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgtatatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| Protein seq | MSLLLRRPPGREAYLGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVARKSKLELAQFAELKAFAQFASALDKTSQNQLARGRRLRELLKQFQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERNKHKFCTSTLDVKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFCLEVSTSKETSLKLPIGGRGRVINVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLVGDLIKKHYRIAPFDERYQQEASGKLVFSELYEASKQTKIRGYLNPSTREKAEYLMEEQETPSNSLF |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013620 | OsCMeo_08g0013620.01 | Chr08 | 16809809 | 16811776 | + | NAM | ||
| CDS seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggaacaaacataaattttgcacgtctactcttgatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgtatatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| Protein seq | MSLLLRRPPGREAYLGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVARKSKLELAQFAELKAFAQFASALDKTSQNQLARGRRLRELLKQFQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERNKHKFCTSTLDVKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFCLEVSTSKETSLKLPIGGRGRVINVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLVGDLIKKHYRIAPFDERYQQEASGKLVFSELYEASKQTKIRGYLNPSTREKAEYLMEEQETPSNSLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 17.790222 | 0.000000 | 21.770741 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0171600 | SBH | 0.0 | 0.0 | 1.435278 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16740 | SBH | 366.193787 | 344.205444 | 44.800987 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0171600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013710 | RBH | 0.000000 | 5.991801 | 7.182114 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004920 | SBH | 0.0 | 0.0 | 0.651596 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005430 | RBH | 1382.364014 | 209.973801 | 1308.764648 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013910 | RBH | 0.479764 | 0.062354 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004600 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019770 | SBH | 318.028931 | 0.0 | 121.187912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036910 | SBH | 24.298254 | 10.598877 | 29.336964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
