Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0013610 | OGI:01056340 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:16806783-16809637 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tatccttaaccatttcttttttttgacacgaggaactcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccataggtcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatggaagctttaacaatttatgaactagttgtggcactggcgtttttatttgcgaacccttttgtttaatcctaaaaaaaacgagtcctttagattagatactttcttctttttttagtaaattggtatttgcttctgcaattccaattatatcaatactttactcctaatttattactcctagagttttctatttatggggacagacaataccccaccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaacatttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattactaaattgaatctatttctattaaaaaaattgcattaaaaaaaccgatcaaaaagggcaagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccatttctttcgtttttttagctcactggccatccgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttagaatattttttagtatttttcgaataaataagaaaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaaccatagcatttcgcgacctattggtaaatcaaatcaactttgattctctatagaccaataatatgagaccattaacacggttaaagctaaactgcttgaaatctaggcaaaagggggtactctttctacaactatattagtattagtaccaaatgctttaaacaggaaatagctaatgtagaatttatctgatatagaacactcatatcgataaaatggtttgaactatttactagaaggggcaccctgcccttttttatccaatgccgaatcgacgacctatgtataaaaaaggagaaagtttttggatgtgaagaaaaaggtaggaattctatccattttcattttccatttttctatttagtttttcttaatgaaattgacaattttaactaaagggcaaatacaaataaaaaaacaactttgctgcccacgatagatttttatctaggcggaagagtcctcttaatatttatctagtcttatatgagtttcggtatattgaaatataaacagaaaagagagggtaggggataggctcattacattaaaaaaatatggaagtagccatagcaaaaaaagaaaaaagggagcgtgagagccaaatgaatcgaaagattcatgtttggttcgggaagagatcataaagttgtaaacttaatagcaaggtaatctactttcattaaaagttttattagataatcgaaaacagaggatcttgagtactattcgaaatttagaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtatcgaatgaatggatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcaggtccgacaacgggttttccaacaagccgtacaaggagctctaggaactctgaatagttgtttgaataccgagttacatttccgtacgattcgtgctaatattagcattctcggggccatggaatggaagagttaaattaattagtccttgaacttctactttcctttagaatttaggcattatttttccccttgcttccgaaaaaaaaatagtaaagaaacactgatggcaacccttcgagtcgacgaaattcataaaattctccgcgaacgtattgaacaatataatagaaaagtagggattgagaatatcggtcgcgtagttcaagtgggggatgggattgctcttattataggtcttggtgaaataatgtcaggcaaattagtcgaatttgcacaagcgactaggggtattgctctgaattttgaatccaaaaatgttgggattgtattaatgggcgatgggttgatgatacatgagggcagttttgtaaaagcaacaggaagaattgctcagatacccgtgagcgaggcttacttgggtcgtgttataaatgctctagctaaacctattgatgggagaggcgaaattgtagcttcggaatctcgcttaattgaatctcctgctccgggtataatttccaggcattctgtatatgaaccccttcaaacggggcttattgctatcgattcgatgattcctattgggcgcggtcagcgagagttaattattggggacagacaaaccagcaaaacagtagtagctaccgatacaattctgaatcaaaaagggcaagatgtaatatgtgcttatgtagctatcggtcaaagagcatcctccgtagctcaagtagtaactactttccatgaatag
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| CDS seq | atgaatccactaattgctgctgcttccgttattgctgctggattggccataggtcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaagctcactggccatccgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgatttattttggaaagggaaggatcttgagtactattcgaaatttagaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtatcgaatgaatggatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcaggtccgacaacgggttttccaacaagccgtacaaggagctctaggaactctgaatagttgtttgaataccgagttacatttccgtacgattcgtgctaatattagcattctcggggccatggaatggaagatcgacgaaattcataaaattctccgcgaacgtattgaacaatataatagaaaagtagggattgagaatatcggtcgcgtagttcaagtgggggatgggattgctcttattataggtcttggtgaaataatgtcaggcaaattagtcgaatttgcacaagcgactaggggtattgctctgaattttgaatccaaaaatgttgggattgtattaatgggcgatgggttgatgatacatgagggcagttttgtaaaagcaacaggaagaattgctcagatacccgtgagcgaggcttacttgggtcgtgttataaatgctctagctaaacctattgatgggagaggcgaaattgtagcttcggaatctcgcttaattgaatctcctgctccgggtataatttccaggcattctgtatatgaaccccttcaaacggggcttattgctatcgattcgatgattcctattgggcgcggtcagcgagagttaattattggggacagacaaaccagcaaaacagtagtagctaccgatacaattctgaatcaaaaagggcaagatgtaatatgtgcttatgtagctatcggtcaaagagcatcctccgtagctcaagtagtaactactttccatgaatag
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| Protein seq | MNPLIAAASVIAAGLAIGLASIGPGVGQGTAAGQAVEGIARQPEAEAHWPSAGSFGLNTDILATNLINLTVVVGVLIYFGKGRILSTIRNLEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAMEWKIDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIALIIGLGEIMSGKLVEFAQATRGIALNFESKNVGIVLMGDGLMIHEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRHSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTSKTVVATDTILNQKGQDVICAYVAIGQRASSVAQVVTTFHE |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013610 | OsCMeo_08g0013610.01 | Chr08 | 16806824 | 16809637 | + | NAM | ||
| CDS seq | atgaatccactaattgctgctgcttccgttattgctgctggattggccataggtcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaagctcactggccatccgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgatttattttggaaagggaaggatcttgagtactattcgaaatttagaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtatcgaatgaatggatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcaggtccgacaacgggttttccaacaagccgtacaaggagctctaggaactctgaatagttgtttgaataccgagttacatttccgtacgattcgtgctaatattagcattctcggggccatggaatggaagatcgacgaaattcataaaattctccgcgaacgtattgaacaatataatagaaaagtagggattgagaatatcggtcgcgtagttcaagtgggggatgggattgctcttattataggtcttggtgaaataatgtcaggcaaattagtcgaatttgcacaagcgactaggggtattgctctgaattttgaatccaaaaatgttgggattgtattaatgggcgatgggttgatgatacatgagggcagttttgtaaaagcaacaggaagaattgctcagatacccgtgagcgaggcttacttgggtcgtgttataaatgctctagctaaacctattgatgggagaggcgaaattgtagcttcggaatctcgcttaattgaatctcctgctccgggtataatttccaggcattctgtatatgaaccccttcaaacggggcttattgctatcgattcgatgattcctattgggcgcggtcagcgagagttaattattggggacagacaaaccagcaaaacagtagtagctaccgatacaattctgaatcaaaaagggcaagatgtaatatgtgcttatgtagctatcggtcaaagagcatcctccgtagctcaagtagtaactactttccatgaatag
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| Protein seq | MNPLIAAASVIAAGLAIGLASIGPGVGQGTAAGQAVEGIARQPEAEAHWPSAGSFGLNTDILATNLINLTVVVGVLIYFGKGRILSTIRNLEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAMEWKIDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIALIIGLGEIMSGKLVEFAQATRGIALNFESKNVGIVLMGDGLMIHEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRHSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTSKTVVATDTILNQKGQDVICAYVAIGQRASSVAQVVTTFHE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013610 | OsCMeo_08g0013610.02 | Chr08 | 16806783 | 16807389 | + | IsoSeq | ||
| CDS seq | atgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgtttagggcagtggaaagtatttttcctttta |
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| Protein seq | MINLEDMFAVLLPALCLGQWKVFFLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 636.464111 | 107.635475 | 761.092834 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16748 | SBH | 359.647064 | 267.345367 | 46.024559 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013700 | RBH | 65.877716 | 0.000000 | 82.871605 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002690 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005430 | SBH | 1382.364014 | 209.973801 | 1308.764648 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013900 | RBH | 0.000000 | 0.001277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002770 | SBH | 7.075015 | 0.0 | 7.372653 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0075500 | SBH | 1.360492 | 0.1622295 | 0.3814125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002700 | SBH | 0.435383 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002730 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0002760 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017940 | RBH | 4.162531 | 0.947513 | 2.215096 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017790 | RBH | 286.852173 | 78.991211 | 447.335388 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004650 | SBH | 2354.627930 | 984.945374 | 3754.520264 |
