Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0006180 | OGI:05015830 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:5702556-5707739 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccggcgtcggcgtcgaggtgtccaagaagagaaagggtgagtcttccgccctggacggaggagaggaggatgctcttgctcctccagcaaagaagaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccgtgtaccgggagctgaagcgcgccaacccgtcgctggtgccctcgccggaggaggagaaggacgagtccaccatgctcctctacacctgcgtcgccgctctcctctctctctcagccgctgacaggtgggtcccacttgtcggatccgtcttcctcgcgccgccgccgccgcccgaaaccctagcgccgccgccgccgtttccttccaaaattcggccgcgtctttccatctccggccgaatcgtttgaggggaaacaacctcctcgatctcctctaccttttcccctttggaaacatcatctttttcggtttggaaacttgtggattcgagtttgcttcggattcattttccccgatgtttccttctcgtcgccggtcgccgtgggcctccgccgccgctcgctagcccctttaaaaggacccccgagctcccctctacccgtcgcctccctcgccttcgctcgccgccgtctgtagcgccctagcgtcgtgccgcttcgcgccgctgtcgtcgccgtcgctccagccgcgtcgcgtcgccgttgcagccgccgtcgtcggtcgccgtcgccgccatcggattcgcaaggtcgtcgccgtccccgtccgccccttcgccgccgccgaagaccgccgaagcgccgttgccgccgtcgacccgaaggttgccgccgcttcttcctcgttgccggcgccgtccgttgcccttccgccgttcctttggtcaccggtgagttcgccgcgtcgccctctacccattggtgccctccgttcgcgccgtcgtgccgtcgttcgccggcgagcatgcgagcccgagccgccgagccgccgccgccggaggtgacgtcatcgctgacgtcatcggagccgttcgccgtgagccggtcgtggaccgtttgatctcggccgtccgttttggatagggttgatctcggccgtccgttcccgtgaaccgccgccgtgcacccggtccaccgcaaaccctagccgctgacgcaataatcctccttttccttttcaaaaataattcattattgcgtcataattcgattaaaatcaatataagtgttttaatccgatttaatctttaaaaattcataactaattcatttgaactcagtttaatgtggttcaagttgcaaaagttgtataaaataaagatctacatattaaaattgtccataaattgaattaaatttatttaattctttttaaatgggctttaattagatttaatcttgtaaaattcataataaattcatttgaagtcagaatgaggccgttcaagtctcataattcatctaaaattatgatctatatgtttgtttattttttatgtattgtttatttggtttttattagtctttttcttcgttttgcgtgttagcttgtcgtttccgtcgttgcgaaggttcgcgagtgcgccggaagtattcaagaagattaattgaagaccgattattgcaaggcaagtcacacagatcctaaacacaatcctttgagcatgttgatcctatatttaaattctctatttatttcaactgtgcatttattttcgaatgtcattgggtggaattaacctattctttgttatggcccttttgatcttgattactttattccttgataccttgggagattataacttgactggttgagctttatatattggttcagctagatattagatatgattgcttagccatgcttagaaacattagcacactattgggataactaatgtttcactatcacttatggttatatttaatggtagctcaagatggtcaatcgtgattggttaattaattacttgccaactaaaacttgataatggtgggttgtgagcacatggttttgagagtcgtgctcatgacaattaaggaccagttcacgagctactgttgtgaaacattaaccgtgccaaccacaagccagcgtgggcaacggctttaccttttgtatagcatggttcattgcggagcaccagactgagaagtggcggagataagcccacgggggtcgctggggagtccatgccttgttttataagggggtgattatgatccaggaatggtgcactgtggtgagttgtgttatgtagagggtattgtcacagcctctattcgggtactttccagtatcgcgacgcatggtagacatgatgttgaggttgtgtcttgtgggtacagtggtacacctctggccagagtaaaactatttgaatagccgtgcccgcggttatgggcgagttgagcaatgtttttggtgattagtcccacgcctctcacaataattatggatgttataactggtaataatttgtttagctcctggtttggaatggtatattcctggtttggagattagatctgtacagccgggtatggttgttcaggatggttgggcctgtgcagcatgggtgtgctgttcagtgttgattaaaatttctgattaattactccactgttttacttctcttaaaagttttgctaaatgctgcttttgcaaatgagccaatattatgccatcctttggtatccttgtgcacttgcatatttgttgtgtggcttgctgagtatgtcatatgctcaccttgcaataatcaatcaacctcagttgaagaaaaaggatccagaaggagaagacgtttggcttataccccagttgagctgcctgtgggagtggagccggagcttcgctagattttattttccgctgcagttttcttcatgatgaggactaagtgcctcataagtaagtatttatcgttttagttaatttgatgaatctgtatattaaattgtcagtttgtgtacctcggctgattcctggacgaggattttgtgcacaaataagttcggaaattactagtgaatttccgggcgtgacacgaaattagtagattaatttaaaaaactaatccaccaattaccttactgcgtactcgttcgatatcatatgatttgacgtcttttggtacgccaaattgttgacaatgatggttctaatcttgtcggggcacgtactctggttaggttaaacttcccagatccaaaatagttgaagtatccctcgtcaaaaaatccatagtgacgatgacttggcgaagcttgacgaagatcccgatccgtcggagaacgtacttcgttcgggtcatatcacccaacatacgaagtcgctgagtagtttgttgttgaagaatccatctcttgaacccatctcgtcgaaatcctgaagcaccaaaatccactacctggcgcgccactgtcgacgtttgatgtcacgactacggtatttgcatagtatggggatcgttggtactaggatatatgcgatattgaggtaaaagagatggcgacgatgatttttatacaggttcgggtccctgaattgttaggtaattaataaccctactcctgttggcctaagccggtcgttgctcttattcaccacaattacagcagtacaatatttgtggtagcctatctaactgttgtcgatttggtggtctaaagtgctgactcgtagtcaacaacagggtagccttcctcctcgaatccgcatccggcaaaatcaaagacagcgctatgtctctcctatcagtatccgtagacaccgtagggaagactagccatgcttatctctgaagtcgatatccggcgtcttgtcttggcgtatgttggcttgtatgtcgatcttgtgtcttgatctattgttccgtcccccctctcctcctagggggtcttgtatttatacccataggtgttcccttttccaagtagaactagggaaaccaatatagatacaatccgagtaatccttgtcgtttccatgtagaactctatttatctttcctgatcggaactccttctgtacccgaaggttgtttccgtataaaacatggtatgtggtgggtcctgccgagatttagtcaactactattaggtatgtggtatccataaccctgacacatatcatcaaaaatatattcaatgttagatttaatgaaaccaatttaatattttagatgttgctaaatttttttataaatttaatcaaactcaataaagtttgaaaacaaatcaaacgactagtaatacgtccagtaaaaaaaaagactagtaattcgaaacaaagacagagtagtaaaatttctccgttactactcgatgtgttgatcccattcaggagttaccaactaggctactaatacgacgagtgataaggcagaacaaattaaacaggccagacctgcaaagtagcaagccagcgctcgcacctccgattccgacactggctcggtcgcgcaccacccccgactccgactccgactcctatccggcgatgagtaattaagctatatattcaatattcttcgctcccgtcctccacaaatcgctccctctcgtgatttatcacattacctcgtgtgattgtcgtactccacaaatcgctccctcactcgtgatttgttgccgccggatcacatcctgcgctagatggccgacgtcgaggtatccgtctcctctaccaagaagaggaaggcggaggaggagtcttccaccgtcgacggaggactagaggaggagcatcctccggcgaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccgtgtaccgggagctgaagcgcgccaacccgtcgctggtgccctcgccggaggaggagaaggacgagtccaccatgctcctctacacctgcgcccgcaacgcctacgaggatgatgccaagttcgccaagtttcaggcttgggtccgcgacgagtacgctcggaaagggttcgtggaggtggactacgactacttcggcgagagggcggaggtgtccaggctgtacgacgaagcacgggaggaggtgatgggacattgggatcatccttccgacaccgacgatgatgacgaagactggaagcttttcattagggcaattaggaggaccttcgtctga
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| CDS seq | atggccggcgtcggcgtcgaggtgtccaagaagagaaagggtgagtcttccgccctggacggaggagaggaggatgctcttgctcctccagcaaagaagaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccatggccgacgtcgaggtatccgtctcctctaccaagaagaggaaggcggaggaggagtcttccaccgtcgacggaggactagaggaggagcatcctccggcgaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccgtgtaccgggagctgaagcgcgccaacccgtcgctggtgccctcgccggaggaggagaaggacgagtccaccatgctcctctacacctgcgcccgcaacgcctacgaggatgatgccaagttcgccaagtttcaggcttgggtccgcgacgagtacgctcggaaagggttcgtggaggtggactacgactacttcggcgagagggcggaggtgtccaggctgtacgacgaagcacgggaggaggtgatgggacattgggatcatccttccgacaccgacgatgatgacgaagactggaagcttttcattagggcaattaggaggaccttcgtctga
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| Protein seq | MAGVGVEVSKKRKGESSALDGGEEDALAPPAKKKKMWLLPQEEVDWILAESNETVCTMADVEVSVSSTKKRKAEEESSTVDGGLEEEHPPAKKMWLLPQEEVDWILAESNETVCTVYRELKRANPSLVPSPEEEKDESTMLLYTCARNAYEDDAKFAKFQAWVRDEYARKGFVEVDYDYFGERAEVSRLYDEAREEVMGHWDHPSDTDDDDEDWKLFIRAIRRTFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0006180 | OsCMeo_05g0006180.01 | Chr05 | 5702556 | 5707739 | + | NAM | ||
| CDS seq | atggccggcgtcggcgtcgaggtgtccaagaagagaaagggtgagtcttccgccctggacggaggagaggaggatgctcttgctcctccagcaaagaagaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccatggccgacgtcgaggtatccgtctcctctaccaagaagaggaaggcggaggaggagtcttccaccgtcgacggaggactagaggaggagcatcctccggcgaagaagatgtggctgctgccgcaggaggaggtggactggatcctcgccgagtccaacgagaccgtctgcaccgtgtaccgggagctgaagcgcgccaacccgtcgctggtgccctcgccggaggaggagaaggacgagtccaccatgctcctctacacctgcgcccgcaacgcctacgaggatgatgccaagttcgccaagtttcaggcttgggtccgcgacgagtacgctcggaaagggttcgtggaggtggactacgactacttcggcgagagggcggaggtgtccaggctgtacgacgaagcacgggaggaggtgatgggacattgggatcatccttccgacaccgacgatgatgacgaagactggaagcttttcattagggcaattaggaggaccttcgtctga
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| Protein seq | MAGVGVEVSKKRKGESSALDGGEEDALAPPAKKKKMWLLPQEEVDWILAESNETVCTMADVEVSVSSTKKRKAEEESSTVDGGLEEEHPPAKKMWLLPQEEVDWILAESNETVCTVYRELKRANPSLVPSPEEEKDESTMLLYTCARNAYEDDAKFAKFQAWVRDEYARKGFVEVDYDYFGERAEVSRLYDEAREEVMGHWDHPSDTDDDDEDWKLFIRAIRRTFV
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0192500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g10420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0192500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006250 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006260 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0086200 | SBH | 0.0208025 | 0.4295515 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006090 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0085300 | RBH | 0.0463235 | 0.9784755 | 0.0985505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006170 | SBH | 0.0 | 0.026823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006110 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006260 | RBH | 0.0 | 0.936186 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006070 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006260 | RBH | 0.0 | 0.0 | 0.0 |
