Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0011010 | OGI:04057200 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:18145468-18146991 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccttggctttcgccggcaaatcggtggctgtgtcggccatctccatgattgtccgcaagtctttcgattaccttgagaagtatgcgaaggcggaggggatgaagtcggtgcaggagcggcttgagaggactctcccacaagtccaagttgtctttgatgcaattgatatggagaggataagggatcagagcgaggcgcttgatgcctggctttggcagctcagggatgccgtcgaggaggcagaggatgtgctcgatgaggtggagtactacaagcttgagaaaaaggtgaaaactagaggtaacaaggtgagcagctctctgtacaagtgcaagagggtggttgttcagcaattcaatagtacttttaaggctggaacttttaagagattgttggatgccatcagaaaacttgatgaaattgttgttggtgtggagcgttttgttctactcgtggaccggctggattcttgtacttcaaggcacgtatgtcatcaggaggttagtaatcctcgtgagactagctccttcagtgttgatgaaattgtaattggccgtgatactgagagggttaagattgttgaatggctgattgaacaagacaacgttcatgaccatgatgtttgtgctgtaaatgctttttctatagttggcataggtggcatgggcaagaccacgctagcacaggcaatctacaatgatcaaagagtgaagcagtgctttgatcaggctatgtggatttgtgtgtccaatgactttgatgtccctgctctgatgaaaaagattatacaagaaatcactagagaaggtactaatgttactaatttcaatacacttcaagaaatcgtcagagagaatctgaaatccaagaagttccttcttgtatttgatgatgtatggaatgatgagagaaggcctgactgggagaaactagtagctcctctgaaatttggtcaaaagggaagcaaaatcttattgacaacccggatggaatcagtggtagatattgttgaaagggtactaggaggaagaaccaagtctctacgattggagggactgcatgacaaagatcttttagcaatttttaacaggcatgcttttttcgaagtaaatcctgatgattatttcaacctacaggagataggcaagaaaattactaggaaattgagtggatgcccattagcagcaaagatcatgggtgggctgttgaacaactctctggatagcatatactggaacagaatgcttagagaaaatatctctaatattgagcataatagtgaaggcattatgaaaattttaagattaagttatcatcatctggccccacatctacaggcttgcttcagatattgtggcatgttccgagaagattactggtttcgaaaggatgagctgattaacttttggatgggttcaggactaattcagctatctgcaaatgaaaaccagaggccagaggatataggagagttttatttgggtatactaacaaagaagtctttctttgaatgcagttaa
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| CDS seq | atggccttggctttcgccggcaaatcggtggctgtgtcggccatctccatgattgtccgcaagtctttcgattaccttgagaagtatgcgaaggcggaggggatgaagtcggtgcaggagcggcttgagaggactctcccacaagtccaagttgtctttgatgcaattgatatggagaggataagggatcagagcgaggcgcttgatgcctggctttggcagctcagggatgccgtcgaggaggcagaggatgtgctcgatgaggtggagtactacaagcttgagaaaaaggtgaaaactagaggtaacaaggtgagcagctctctgtacaagtgcaagagggtggttgttcagcaattcaatagtacttttaaggctggaacttttaagagattgttggatgccatcagaaaacttgatgaaattgttgttggtgtggagcgttttgttctactcgtggaccggctggattcttgtacttcaaggcacgtatgtcatcaggaggttagtaatcctcgtgagactagctccttcagtgttgatgaaattgtaattggccgtgatactgagagggttaagattgttgaatggctgattgaacaagacaacgttcatgaccatgatgtttgtgctgtaaatgctttttctatagttggcataggtggcatgggcaagaccacgctagcacaggcaatctacaatgatcaaagagtgaagcagtgctttgatcaggctatgtggatttgtgtgtccaatgactttgatgtccctgctctgatgaaaaagattatacaagaaatcactagagaaggtactaatgttactaatttcaatacacttcaagaaatcgtcagagagaatctgaaatccaagaagttccttcttgtatttgatgatgtatggaatgatgagagaaggcctgactgggagaaactagtagctcctctgaaatttggtcaaaagggaagcaaaatcttattgacaacccggatggaatcagtggtagatattgttgaaagggtactaggaggaagaaccaagtctctacgattggagggactgcatgacaaagatcttttagcaatttttaacaggcatgcttttttcgaagtaaatcctgatgattatttcaacctacaggagataggcaagaaaattactaggaaattgagtggatgcccattagcagcaaagatcatgggtgggctgttgaacaactctctggatagcatatactggaacagaatgcttagagaaaatatctctaatattgagcataatagtgaaggcattatgaaaattttaagattaagttatcatcatctggccccacatctacaggcttgcttcagatattgtggcatgttccgagaagattactggtttcgaaaggatgagctgattaacttttggatgggttcaggactaattcagctatctgcaaatgaaaaccagaggccagaggatataggagagttttatttgggtatactaacaaagaagtctttctttgaatgcagttaa
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| Protein seq | MALAFAGKSVAVSAISMIVRKSFDYLEKYAKAEGMKSVQERLERTLPQVQVVFDAIDMERIRDQSEALDAWLWQLRDAVEEAEDVLDEVEYYKLEKKVKTRGNKVSSSLYKCKRVVVQQFNSTFKAGTFKRLLDAIRKLDEIVVGVERFVLLVDRLDSCTSRHVCHQEVSNPRETSSFSVDEIVIGRDTERVKIVEWLIEQDNVHDHDVCAVNAFSIVGIGGMGKTTLAQAIYNDQRVKQCFDQAMWICVSNDFDVPALMKKIIQEITREGTNVTNFNTLQEIVRENLKSKKFLLVFDDVWNDERRPDWEKLVAPLKFGQKGSKILLTTRMESVVDIVERVLGGRTKSLRLEGLHDKDLLAIFNRHAFFEVNPDDYFNLQEIGKKITRKLSGCPLAAKIMGGLLNNSLDSIYWNRMLRENISNIEHNSEGIMKILRLSYHHLAPHLQACFRYCGMFREDYWFRKDELINFWMGSGLIQLSANENQRPEDIGEFYLGILTKKSFFECS |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0011010 | OsCMeo_04g0011010.01 | Chr04 | 18145468 | 18146991 | + | NAM | ||
| CDS seq | atggccttggctttcgccggcaaatcggtggctgtgtcggccatctccatgattgtccgcaagtctttcgattaccttgagaagtatgcgaaggcggaggggatgaagtcggtgcaggagcggcttgagaggactctcccacaagtccaagttgtctttgatgcaattgatatggagaggataagggatcagagcgaggcgcttgatgcctggctttggcagctcagggatgccgtcgaggaggcagaggatgtgctcgatgaggtggagtactacaagcttgagaaaaaggtgaaaactagaggtaacaaggtgagcagctctctgtacaagtgcaagagggtggttgttcagcaattcaatagtacttttaaggctggaacttttaagagattgttggatgccatcagaaaacttgatgaaattgttgttggtgtggagcgttttgttctactcgtggaccggctggattcttgtacttcaaggcacgtatgtcatcaggaggttagtaatcctcgtgagactagctccttcagtgttgatgaaattgtaattggccgtgatactgagagggttaagattgttgaatggctgattgaacaagacaacgttcatgaccatgatgtttgtgctgtaaatgctttttctatagttggcataggtggcatgggcaagaccacgctagcacaggcaatctacaatgatcaaagagtgaagcagtgctttgatcaggctatgtggatttgtgtgtccaatgactttgatgtccctgctctgatgaaaaagattatacaagaaatcactagagaaggtactaatgttactaatttcaatacacttcaagaaatcgtcagagagaatctgaaatccaagaagttccttcttgtatttgatgatgtatggaatgatgagagaaggcctgactgggagaaactagtagctcctctgaaatttggtcaaaagggaagcaaaatcttattgacaacccggatggaatcagtggtagatattgttgaaagggtactaggaggaagaaccaagtctctacgattggagggactgcatgacaaagatcttttagcaatttttaacaggcatgcttttttcgaagtaaatcctgatgattatttcaacctacaggagataggcaagaaaattactaggaaattgagtggatgcccattagcagcaaagatcatgggtgggctgttgaacaactctctggatagcatatactggaacagaatgcttagagaaaatatctctaatattgagcataatagtgaaggcattatgaaaattttaagattaagttatcatcatctggccccacatctacaggcttgcttcagatattgtggcatgttccgagaagattactggtttcgaaaggatgagctgattaacttttggatgggttcaggactaattcagctatctgcaaatgaaaaccagaggccagaggatataggagagttttatttgggtatactaacaaagaagtctttctttgaatgcagttaa
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| Protein seq | MALAFAGKSVAVSAISMIVRKSFDYLEKYAKAEGMKSVQERLERTLPQVQVVFDAIDMERIRDQSEALDAWLWQLRDAVEEAEDVLDEVEYYKLEKKVKTRGNKVSSSLYKCKRVVVQQFNSTFKAGTFKRLLDAIRKLDEIVVGVERFVLLVDRLDSCTSRHVCHQEVSNPRETSSFSVDEIVIGRDTERVKIVEWLIEQDNVHDHDVCAVNAFSIVGIGGMGKTTLAQAIYNDQRVKQCFDQAMWICVSNDFDVPALMKKIIQEITREGTNVTNFNTLQEIVRENLKSKKFLLVFDDVWNDERRPDWEKLVAPLKFGQKGSKILLTTRMESVVDIVERVLGGRTKSLRLEGLHDKDLLAIFNRHAFFEVNPDDYFNLQEIGKKITRKLSGCPLAAKIMGGLLNNSLDSIYWNRMLRENISNIEHNSEGIMKILRLSYHHLAPHLQACFRYCGMFREDYWFRKDELINFWMGSGLIQLSANENQRPEDIGEFYLGILTKKSFFECS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.121100 | 1.061663 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0378575 | RBH | 0.674854 | 0.445779 | 0.694960 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30930 | RBH | 0.446772 | 0.260742 | 0.175575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0378575 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010550 | RBH | 0.049902 | 2.065593 | 1.073457 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011310 | RBH | 0.033745 | 0.318961 | 0.795581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010700 | RBH | 0.018732 | 0.030988 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010940 | RBH | 2.056862 | 0.0 | 4.341220 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0288000 | RBH | 1.0661585 | 4.092203 | 1.820477 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009530 | RBH | 0.024676 | 0.196304 | 0.338944 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0291600 | RBH | 1.140753 | 2.6620285 | 5.108426 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026640 | SBH | 0.019693 | 0.221956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009720 | RBH | 0.093038 | 3.374810 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009770 | RBH | 1.786479 | 6.441473 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010270 | RBH | 0.092398 | 0.605192 | 0.173372 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027150 | SBH | 0.056504 | 1.343484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010010 | RBH | 0.123140 | 0.233631 | 0.874983 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010070 | RBH | 0.0 | 3.111653 | 0.618531 |
