Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0020490 | OGI:11028840 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:24525846-24530051 | ||||||||
| Gene Symbol | RPP8, OsRPP8 | ||||||||||
| DNA seq | TGATGCCCTGAGAAAGAGGAACCTCGTTCTCCATCGAGCCCAAGCGCCGCCGCTCCGCCGCCATCGCCGTCGCCGTCGACCCGCCCCCGCGGCGGAGAGGAACTGCAAGCCCTAGGTACGTGAAAGTGTGTGGGTGGGTTGGGGTTGAAGTTGAATCGGCTCAGTTTTGTCTGCAGCTGAAAGCTTGATTTCTCGGTCGGTCAGGTTCTGGTTTGTGTTTAGCTGCGGTGTGGATTTGGGGGATTCAGAGTTCAAAGTGAAAGTTCATCTCTAATTTGTTCAGTTCTTGTGCGGAAACTTGTGAAAAGTTTTAGTTTAGTTGCCCAAGTTTGTAGCTGAAACTTAAATGTGAATTCTTAAAAAAAAAACAACAGATTTTCAGAAACTCGAATATTAGCTCAAACCTTTTGCGATTGAAATGTCCTAGCGCATGCAAGATCTCTCAAACAAGACTACATGATATGATCCAGGAGCTAGCGAAACACCTTCCAGAACATACAAATGAAGAGTTCTATGTCCGAGACTAAAGTTTGTGCTAGTGAATATCTGACGGCCGAGGTGGAGCGGCTCTGGGTGGTCTACATAATGGAGGTCAGAGCTATTACCCTGTTACATGCTTGGCCATTAAGTGAAATGACAAAGCAGTTAATTAATCATAGATTTTATACATATAAGCACAAGGCACCAAGGTAAATGGATTGTCACTGGTAGATGCATTGCACAATGTCTCCAATTCCTACCATAAAAATTTGCTTAAAGCAAAAAGTGCCAATCTCACATGCTCCTTTGATTATAGTTTCGTCCCCTTTAGCCTCTCTATGTACTATATACACCTGTGAGCCTATTTAATAGAAAAGAAACAACATAAATAAAGCTATTCTGTTGGAGGCTCAAATATGTTAATTTAACATGCCAAAACCTCATCTGAAGTAAGGTATTCTTGTAGTTAACTCAATGCATCTCCTTGCTTCACCTCATTACCAAATTAAGTAGGCTAAATACTGCACTTGTTTTTTTACTTAACACCCAATATCAAGCAAGGCCCTGATCAAGCCAACATCACTCTAACACGAGAGTAAGGTATCAAGAACTCGGATGTTAGTTGAAATCTTTTTGCAGTTCCGATTCACCTTAAATTGTTCATTACATCACTCTAACAAGATTAGCTACATGATGGAAGACCTACAGAAATACTACTACCGTCAAGGATTTATGTGTGTCGTCTACATACTGGAGGTCAGATCGATTTATTACTTTGTTACCCTGCTTATTATCTACTAGACTTCACCTTCAATCAAATGGTCAAAGCAGTTAATTATAATCACATATTGGCATATTGCACACCTAGAGCACAAGGCACCAAGGAAAATGGTTTGTTAGCTCCAATTTATAAGTTCTGAAGGTACATGCTTTGCAAAGCATGTATCCAAATCCTACTGATCAATATCTGCTTAAAGCAAATGTGCCAATCTCACATGCTCCTTTGGTTTTAGTTTTGTGAACCTTTGCCCTCTCTAAGTATACAATGTGTGGGGCTACTGTGCATTTGTTCCTTTGAGCTTAGTATAATACACCTGTGAGCCTATTTAATAGAAAAGAAACAACACAAAAAAGCTAGTCTGTTGGAGGTTCAAATATGTTAATTTAAGATGCCAAAACCCCATCCAAAGTAAGGTATTCTTGTAGTTAACTCCACTGCATTTCTTTGCTGCACCTCATTAGTTACCTGCACTTCTTATTTACATCAAGCAAGGCCCTGAACAAGCCAACATTACATTACCAAATTATGCCCTCCAAAACCACAATTACACTCTGAGAAATACAATCCTCATTTCTTGGAAATATTTTCCATATTCCTCAGTTCATTGAGCAACCGTTTGTGAGCAGATATGGCTGAATCGGCTGTTTCTGCAGCGGTTGGTAGCATCAGCAACCTTGCTGCCCAGGAGACCTCACTGTTATGTGGAGTCATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCATTGTTCTTCTCCTTGCACTGTAGCTACATATTTTCAGAAAAATTTTTATGGTCATCAAGGAGGGCAGCACTTATTTTTAGCATTATTTTTTGCATACTAGTACCTGAGTATTGAGGTGTCAGGAGTATCCACAACTTTCATTAAGAAATGTGATACCTACTGATGTCTCTTTTAAGATACGTAAAAAATATTTTAGGCTCTCTTGTTTCCTCCTTAAGGACTGTAAGATTATTGCTCCTTTCAAAATATTTATCCTGCTGACATGCATGTATTGATTTACTTAACACATTTGCAGGTCGAGCTGAAGTATCATCATTTAATACCATGACATTCTATCGGAATTCTTTTCATCACTTCTTTGATGACAAGATACTCCAGGCAACAGCTTATAAACGTACTATACTTGGCTTTAGTGTCCCATCGATGTTCCTACTGAAGCTGAAGTTTCTGAGAGTTCTTCATGTAGAAAATTCAACGATAAATAATTTCTCCATGGCAATTAGTGAGTGCATTCACCTCAGGCATCTAATATTGAGAAATTGTGTAAGTGTTAGACACCCACCTTCAATTGGAAAGCTTCTTTACTTGCAAACAATAGATTTGAGGAGAACAATTTTGGAGTCAATTGTACCAGAGTCCCTGTGGAATATTGCCTCTCTAAAGCATGTTTATCTTAGTGGAGGATTTTACCCAACAAGGAATGGCAAACAAAAAGAGCTTCGGACTTTTCATTTGG
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| CDS seq | ATGGCTGAATCGGCTGTTTCTGCAGCGGTTGGTAGCATCAGCAACCTTGCTGCCCAGGAGACCTCACTGTTATGTGGAGTCATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCGAGCTGA
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| Protein seq | MAESAVSAAVGSISNLAAQETSLLCGVMDEVGFLKAELERLHGFLEDAKHKRRSGDASAAVLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFMGAISRYARLPTDLIALHKIGVEIQRIRRKISEIFDSANRLKIVGLGNPTTDIGHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQENELNVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVTVSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKIHEFLLNKRYVVVLDDVWATDTWNQINRVGKVFPDANNGSRVLLTTRKEDVANHIEMSTYIHPLKLLDDEKSWELFSRKSLPSYKRSSLQDVNEFEELGRKLARKCNGLPLALAVLGGYLSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNYMKSCFLYIAVFPEDYSISTADLVELWTAECFVQPRRKYKPEELAYKYISELAQRSLVQVVDRSTAHGSILRIKIHDILRDWCIEEATQDGFFLCHRQKYRSS |
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| Function | Putative disease resistance protein At1g50180 [UniProtKB/Swiss-Prot:Q9SX38] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0020490 | OsARC_11g0020490.01 | Chr11 | 24525846 | 24530051 | + | NAM | ||
| CDS seq | ATGGCTGAATCGGCTGTTTCTGCAGCGGTTGGTAGCATCAGCAACCTTGCTGCCCAGGAGACCTCACTGTTATGTGGAGTCATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCGAGCTGA
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| Protein seq | MAESAVSAAVGSISNLAAQETSLLCGVMDEVGFLKAELERLHGFLEDAKHKRRSGDASAAVLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFMGAISRYARLPTDLIALHKIGVEIQRIRRKISEIFDSANRLKIVGLGNPTTDIGHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQENELNVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVTVSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKIHEFLLNKRYVVVLDDVWATDTWNQINRVGKVFPDANNGSRVLLTTRKEDVANHIEMSTYIHPLKLLDDEKSWELFSRKSLPSYKRSSLQDVNEFEELGRKLARKCNGLPLALAVLGGYLSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNYMKSCFLYIAVFPEDYSISTADLVELWTAECFVQPRRKYKPEELAYKYISELAQRSLVQVVDRSTAHGSILRIKIHDILRDWCIEEATQDGFFLCHRQKYRSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0020490 | OsARC_11g0020490.02 | Chr11 | 24525847 | 24530051 | + | NAM | ||
| CDS seq | ATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCGAGCTGA
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| Protein seq | MDEVGFLKAELERLHGFLEDAKHKRRSGDASAAVLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFMGAISRYARLPTDLIALHKIGVEIQRIRRKISEIFDSANRLKIVGLGNPTTDIGHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQENELNVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVTVSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKIHEFLLNKRYVVVLDDVWATDTWNQINRVGKVFPDANNGSRVLLTTRKEDVANHIEMSTYIHPLKLLDDEKSWELFSRKSLPSYKRSSLQDVNEFEELGRKLARKCNGLPLALAVLGGYLSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNYMKSCFLYIAVFPEDYSISTADLVELWTAECFVQPRRKYKPEELAYKYISELAQRSLVQVVDRSTAHGSILRIKIHDILRDWCIEEATQDGFFLCHRQKYRSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0020490 | OsARC_11g0020490.04 | Chr11 | 24525852 | 24530051 | + | NAM | ||
| CDS seq | ATGGCTGAATCGGCTGTTTCTGCAGCGGTTGGTAGCATCAGCAACCTTGCTGCCCAGGAGACCTCACTGTTATGTGGAGTCATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCGAGCTGA
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| Protein seq | MAESAVSAAVGSISNLAAQETSLLCGVMDEVGFLKAELERLHGFLEDAKHKRRSGDASAAVLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFMGAISRYARLPTDLIALHKIGVEIQRIRRKISEIFDSANRLKIVGLGNPTTDIGHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQENELNVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVTVSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKIHEFLLNKRYVVVLDDVWATDTWNQINRVGKVFPDANNGSRVLLTTRKEDVANHIEMSTYIHPLKLLDDEKSWELFSRKSLPSYKRSSLQDVNEFEELGRKLARKCNGLPLALAVLGGYLSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNYMKSCFLYIAVFPEDYSISTADLVELWTAECFVQPRRKYKPEELAYKYISELAQRSLVQVVDRSTAHGSILRIKIHDILRDWCIEEATQDGFFLCHRQKYRSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0020490 | OsARC_11g0020490.03 | Chr11 | 24525852 | 24530051 | + | NAM | ||
| CDS seq | ATGGCTGAATCGGCTGTTTCTGCAGCGGTTGGTAGCATCAGCAACCTTGCTGCCCAGGAGACCTCACTGTTATGTGGAGTCATGGATGAAGTTGGGTTCTTGAAAGCTGAGCTCGAGCGTCTCCATGGCTTCCTTGAAGATGCCAAGCACAAGAGGAGGTCTGGGGATGCAAGTGCAGCTGTTCTTGTAGGGCAGATCAGGGATGCAGCATATGACGCCGAGAATGTTATTGAAGCATCAGAGTACATGGTGAAGCGAAACAAGCTCAAGAAGGGTTTCATGGGTGCCATTTCAAGGTATGCTCGTTTACCAACTGATTTGATAGCCCTGCACAAAATTGGTGTTGAAATTCAACGGATAAGAAGGAAGATCAGTGAGATATTTGACAGTGCAAACCGTTTAAAAATCGTTGGATTGGGTAATCCTACCACAGACATAGGTCATGCTGATGATGAGTTTCCCCAAGATTATGATATTATGTATCAAAATTTTGAAGATGATGATGTAGTTGGATTTGATAATGAGTACAATGAGATAGTAGAGAAGTTAGTTGAACAGGAGAACGAGCTTAACGTTGTTTCCATAGTAGCCATGGGTGGTGCGGGGAAAACTACACTTGCTAGAAAAATCTACAATTCAACTAGAATCAGAAATCACTTTGACACAACTGCTTGGGTGACTGTATCTCAAAAGTTCAAAGGCATTGATTTACTTAAAGATATTATGAGACAGATAATGCCCAACAAACTTGAGTCTAGAGAAATTGATCAGATGCAAGAGTTGGAGGTGGGAAAAAAGATCCACGAATTTTTATTGAATAAGAGATATGTTGTAGTGCTTGATGATGTGTGGGCAACAGATACATGGAATCAAATAAATAGAGTGGGTAAAGTCTTTCCAGATGCAAATAATGGCAGTAGAGTATTGTTAACCACTCGAAAGGAAGATGTTGCAAATCATATTGAAATGTCGACCTACATCCATCCTCTGAAGCTCTTAGATGATGAGAAAAGTTGGGAACTTTTTAGTAGAAAATCTTTACCATCATACAAAAGGTCTTCACTACAAGATGTTAATGAGTTTGAAGAACTAGGGAGAAAGCTTGCTAGAAAATGCAACGGATTGCCTCTTGCACTTGCAGTTCTGGGGGGTTATCTGTCCAAAAATTTAAACATACAAGCATGGTCAGACATATTTAAGAGCCGGATATCAACAAAAAATGGACAGATGATGCGAGACATACTAGCTCGCAGTTACAATGATCTGCCAAATAATTATATGAAGTCTTGCTTCCTTTATATTGCTGTTTTCCCTGAGGATTATTCTATATCTACGGCGGACCTTGTTGAATTATGGACAGCTGAATGTTTTGTTCAGCCTAGAAGAAAATATAAGCCAGAAGAACTAGCATACAAGTACATAAGTGAGCTAGCTCAAAGAAGCCTCGTCCAAGTAGTTGATAGAAGCACAGCACATGGATCGATTTTAAGAATAAAGATCCATGATATTTTGCGCGATTGGTGCATCGAAGAAGCAACACAAGATGGGTTTTTTTTGTGTCACCGACAAAAATACAGGTCGAGCTGA
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| Protein seq | MAESAVSAAVGSISNLAAQETSLLCGVMDEVGFLKAELERLHGFLEDAKHKRRSGDASAAVLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFMGAISRYARLPTDLIALHKIGVEIQRIRRKISEIFDSANRLKIVGLGNPTTDIGHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQENELNVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVTVSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKIHEFLLNKRYVVVLDDVWATDTWNQINRVGKVFPDANNGSRVLLTTRKEDVANHIEMSTYIHPLKLLDDEKSWELFSRKSLPSYKRSSLQDVNEFEELGRKLARKCNGLPLALAVLGGYLSKNLNIQAWSDIFKSRISTKNGQMMRDILARSYNDLPNNYMKSCFLYIAVFPEDYSISTADLVELWTAECFVQPRRKYKPEELAYKYISELAQRSLVQVVDRSTAHGSILRIKIHDILRDWCIEEATQDGFFLCHRQKYRSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 24525960 | 24526316 | + | OsARC_11g0020490.01,OsARC_11g0020490.02,OsARC_11g0020490.03 | OsARC_11g0020490.02,OsARC_11g0020490.03,OsARC_11g0020490.01,OsARC_11g0020490.04 | All |
| A3 | Chr11 | 24526436 | 24527760 | + | OsARC_11g0020490.03 | OsARC_11g0020490.02,OsARC_11g0020490.03 | All |
| RI | Chr11 | 24526273 | 24529311 | + | OsARC_11g0020490.01 | OsARC_11g0020490.02,OsARC_11g0020490.01 | All |
| RI | Chr11 | 24526273 | 24529311 | + | OsARC_11g0020490.01 | OsARC_11g0020490.03,OsARC_11g0020490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.083962 | 0.067847 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0633500 | RBH | 1.770704 | 1.670181 | 2.572239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41540 | RBH | 1.295728 | 1.136035 | 0.672826 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0633500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021200 | RBH | 1.287225 | 7.083901 | 7.941422 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021160 | RBH | 0.415586 | 1.198387 | 2.436394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021040 | RBH | 1.509764 | 0.987364 | 10.322219 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020320 | SBH | 0.490201 | 0.170030 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021040 | RBH | 7.615747 | 6.683662 | 10.791025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0391900 | SBH | 1.0437075 | 4.5810225 | 2.736945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021500 | RBH | 0.374805 | 0.360076 | 0.970175 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0395200 | RBH | 4.9857855 | 11.001719 | 18.902684 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021370 | RBH | 0.025420 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021130 | RBH | 12.925997 | 16.332951 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020750 | RBH | 1.196345 | 0.0 | 0.733596 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020880 | RBH | 0.218130 | 4.699809 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020880 | RBH | 0.293348 | 1.380088 | 1.451185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021410 | RBH | 0.224597 | 0.000000 | 0.0 |
