Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0006940 | OGI:11017040 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:5710987-5713446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATCTTGGTGCCTGGACTCGCCCCGTCTCTGGTGGAAGTGGAGCCGGCCCGTTAGGTTCGTGGCCGACCCACCATAGCCGCGGGCTGGATGCACTGAGCGTCTGAGCCACCGTGTCCAGTGAATGGTTGACTGGCTGTGTTAATGTGTTATCATTGAACCATTAAAGCAAGTAGCTATACGTCAATTCAATTATACAAGATTAAAAAATGAACAATCATTTTATATTAAACTGATATCATTTCTTTACTATACTAATTTTATATAAGTCAGATATCAAGTGAAATAAGGAAAAAAAACACATACACTGGCATTATATCTGAACACATACTAACATACTAGAAATTTCGATTGTGCGAAGCAAATCAACATCACTACAGCAAAATAAATAAATAATCAAAAACGATACCAGAACACACTGTATACCCAATGCAAACATTCCGAAATGACTTAATCTTTTGCATTCAAAAGTACAAACATCAATCACTGGGTACTAGCACCTAGTTCAATTAAAACTAAGTACATGCATATACTTATATCATTCACAAAAATCGATCTGAACAACCCAAATATCCGGTTCATTAGATTGAGATCAAACAAAATGAAGCCTTCCAAGATCAAAGTGGGCATCATTTGGCATTCCCTAGCTTGCACTGTTCGTTGAATCACCCAGGTCCAGATTCTGCAGGTTAACATGATGGAGAGATCGAATGATCATGGTATAATGACAGGAAGAAAATATACAATAATTGTTTTAAAAAGGTAATAACCTGCAATATCTCTCAGAAAAAGAAATGGTGCATTTATGTTTTATGGGCAACAACTGAATCAAGACATGAGCATATGCAGACAGACAGAGGAATCAAGGCAGTAGGTGTTCTAAGCATTTGAGTATTTGACATATAAAACATGCTTGAAAAACAGAAGTAATCTGCAGTCACCCAATAGTATTCACAATCAGAGATTAAGGAATACAAGAATCATCTAACAGGTGCTACACAAATTTGCAGATTTTACTAATTTTCTTCATTTATCTAGCAGAAAGTTTCAATTACTGCTAATTTAAAGTTTCCTACTGCCTTGTGTTAAATAGATGGTCTTTTACTTTGTCTCTGTACATACAAATCAAACCAAAACCGAGCAAGACAGATGAACAAGACAGGGTTCATGGAGGAAATCATACCTGTGCTCACGAGGGAGAGAAACCCAGCTGGACGAAGGTGGCGATGTGGCCGGGTGTCCTCCGAAACCCTCGCCGTTGCTGCCGGTGGAGTGTCCTCCGTAGCACCTCGCCGGTTGGCCACCAAGCAGGTAGCCGCCACCCGCCGGTGCCTCCATCCGCCGCCGAAAGAAGGAACTGCATAGAAGAGGAACCAAAGAATCAAGAACCAAAGAAAAGAAAGAGAAAATCAAGAACCAAAGAAAAGAAAGAGAAAATCAAGAACCAAAGAATCCGTTGCTAGTTGCTACGATGGGAACCACAGTACGTCTTGGGGGGAGTTGGAGACGGGAGGAGGACTGAAAGAGCACGCCCAGCCGCCGCCGCCTCAAAACACGGTGGAGCACACCGCGAAGTCGAAGCTGCCACCGCTGCTGCCGCCGCCTCCGCCTCCGTCGGGAGCCGCTGCCGCCACCTCGATCCGTGATGGAGCTGCGCCGCCACCGCTGCCGCCTCCGCCGGGAGCCACCGCCGCCGGCTCGATCCGTGGTGAAGCCGCACCGCCTCAGGCCGGGACCCGTAAAGCCGCCGCCGCCGCCATGCGAACGCGAGCAAGCGGAGCGCTCGAACAAGGCTGACCCAAAAACCCCTAGGGTCAACTGACTCCTGGACCCATTGTCACCTAAGAAAATATGGGCCGGCCCGAAAACCTATTGGTGCCACAAATTTAGGTTCGGGCCACGGACCTAATGGGTCGACCCGCCCCACTTGCAGGCTGAATCCTCACTGCCCCTCTTTCGCTATTCTTTTTTCTCTCTCTCTATCCTCTCTCCTTCCTTCTCCTCCGTCGCGTCGCCGCCTTCTTCGACGCCGCTATCCGTGTCGCCGCCGCCGACCACCCAGACACCCTCCGCACGTGCCGGGATGATGGTCTGCACGAAGCAAGGCGACGAGGCCGAAGATGGCGAGCATCTTGGCGAGCAGCGCCTCGGGCCTCCCCATGGCGGCCTGCACGAATGCCACCGCCGCGGTGCTGTTCGACGACGCGGCATCCCTCCACCCCGCCGCGGCGTCCGCCGCCGCCGCGACGGCGTCCCCGGCGGCGGCGAAGGCGGCTGCCACGGCCCCCTCGACGGCAGCTCTGATGGCGCGGAGGAGGAGGTAGCCGAGGTAGCCCAGGAGCTGGACCAGCCTGAGCAGGAGCACGACGGCCATGGCGGCGCCCTTGAACACCACCGCGGAGGAGCAGGTCATCGTCGTGCTCAGCCCGGTGATGAACAGCTTCGCCATGGCCATTGCCAT
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| CDS seq | ATGGCAATGGCCATGGCGAAGCTGTTCATCACCGGGCTGAGCACGACGATGACCTGCTCCTCCGCGGTGGTGTTCAAGGGCGCCGCCATGGCCGTCGTGCTCCTGCTCAGGCTGGTCCAGCTCCTGGGCTACCTCGGCTACCTCCTCCTCCGCGCCATCAGAGCTGCCGTCGAGGGGGCCGTGGCAGCCGCCTTCGCCGCCGCCGGGGACGCCGTCGCGGCGGCGGCGGACGCCGCGGCGGGGTGGAGGGATGCCGCGTCGTCGAACAGCACCGCGGCGGTGGCATTCGTGCAGGCCGCCATGGGGAGGCCCGAGGCGCTGCTCGCCAAGATGCTCGCCATCTTCGGCCTCGTCGCCTTGCTTCGTGCAGACCATCATCCCGGCACGTGCGGAGGCCTTGTTCGAGCGCTCCGCTTGCTCGCGTTCGCATGGCGGCGGCGGCGGCTTTACGGGTCCCGGCCTGAGGCGGTGCGGCTTCACCACGGATCGAGCCGGCGGCGGTGGCTCCCGGCGGAGGCGGCAGCGGTGGCGGCGCAGCTCCATCACGGATCGAGGTGGCGGCAGCGGCTCCCGACGGAGGCGGAGGCGGCGGCAGCAGCGGTGGCAGCTTCGACTTCGCGGTGTGCTCCACCGTGTTTTGAGGCGGCGGCGGCTGGGCGTGCTCTTTCAGTCCTCCTCCCGTCTCCAACTCCCCCCAAGACGTACTGTGTTCCTTCTTTCGGCGGCGGATGGAGGCACCGGCGGGTGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTACGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGGAGGACACCCGGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTCCCTCGTGAGCACAGTCAACCATTCACTGGACACGGTGGCTCAGACGCTCAGTGCATCCAGCCCGCGGCTATGGTGGGTCGGCCACGAACCTAACGGGCCGGCTCCACTTCCACCAGAGACGGGGCGAGTCCAGGCACCAAGATAG
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| Protein seq | MAMAMAKLFITGLSTTMTCSSAVVFKGAAMAVVLLLRLVQLLGYLGYLLLRAIRAAVEGAVAAAFAAAGDAVAAAADAAAGWRDAASSNSTAAVAFVQAAMGRPEALLAKMLAIFGLVALLRADHHPGTCGGLVRALRLLAFAWRRRRLYGSRPEAVRLHHGSSRRRWLPAEAAAVAAQLHHGSRWRQRLPTEAEAAAAAVAASTSRCAPPCFEAAAAGRALSVLLPSPTPPKTYCVPSFGGGWRHRRVAATCLVANRRGATEDTPPAATARVSEDTRPHRHLRPAGFLSLVSTVNHSLDTVAQTLSASSPRLWWVGHEPNGPAPLPPETGRVQAPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0006940 | OsARC_11g0006940.01 | Chr11 | 5710987 | 5713446 | - | NAM | ||
| CDS seq | ATGGCAATGGCCATGGCGAAGCTGTTCATCACCGGGCTGAGCACGACGATGACCTGCTCCTCCGCGGTGGTGTTCAAGGGCGCCGCCATGGCCGTCGTGCTCCTGCTCAGGCTGGTCCAGCTCCTGGGCTACCTCGGCTACCTCCTCCTCCGCGCCATCAGAGCTGCCGTCGAGGGGGCCGTGGCAGCCGCCTTCGCCGCCGCCGGGGACGCCGTCGCGGCGGCGGCGGACGCCGCGGCGGGGTGGAGGGATGCCGCGTCGTCGAACAGCACCGCGGCGGTGGCATTCGTGCAGGCCGCCATGGGGAGGCCCGAGGCGCTGCTCGCCAAGATGCTCGCCATCTTCGGCCTCGTCGCCTTGCTTCGTGCAGACCATCATCCCGGCACGTGCGGAGGCCTTGTTCGAGCGCTCCGCTTGCTCGCGTTCGCATGGCGGCGGCGGCGGCTTTACGGGTCCCGGCCTGAGGCGGTGCGGCTTCACCACGGATCGAGCCGGCGGCGGTGGCTCCCGGCGGAGGCGGCAGCGGTGGCGGCGCAGCTCCATCACGGATCGAGGTGGCGGCAGCGGCTCCCGACGGAGGCGGAGGCGGCGGCAGCAGCGGTGGCAGCTTCGACTTCGCGGTGTGCTCCACCGTGTTTTGAGGCGGCGGCGGCTGGGCGTGCTCTTTCAGTCCTCCTCCCGTCTCCAACTCCCCCCAAGACGTACTGTGTTCCTTCTTTCGGCGGCGGATGGAGGCACCGGCGGGTGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTACGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGGAGGACACCCGGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTCCCTCGTGAGCACAGTCAACCATTCACTGGACACGGTGGCTCAGACGCTCAGTGCATCCAGCCCGCGGCTATGGTGGGTCGGCCACGAACCTAACGGGCCGGCTCCACTTCCACCAGAGACGGGGCGAGTCCAGGCACCAAGATAG
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| Protein seq | MAMAMAKLFITGLSTTMTCSSAVVFKGAAMAVVLLLRLVQLLGYLGYLLLRAIRAAVEGAVAAAFAAAGDAVAAAADAAAGWRDAASSNSTAAVAFVQAAMGRPEALLAKMLAIFGLVALLRADHHPGTCGGLVRALRLLAFAWRRRRLYGSRPEAVRLHHGSSRRRWLPAEAAAVAAQLHHGSRWRQRLPTEAEAAAAAVAASTSRCAPPCFEAAAAGRALSVLLPSPTPPKTYCVPSFGGGWRHRRVAATCLVANRRGATEDTPPAATARVSEDTRPHRHLRPAGFLSLVSTVNHSLDTVAQTLSASSPRLWWVGHEPNGPAPLPPETGRVQAPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0006940 | OsARC_11g0006940.02 | Chr11 | 5711435 | 5712801 | - | IsoSeq | ||
| CDS seq | ACCCTAGGGGTTTTTGGGTCAGCCTTGTTCGAGCGCTCCGCTTGCTCGCGTTCGCATGGCGGCGGCGGCGGCTTTACGGGTCCCGGCCTGAGGCGGTGCGGCTTCACCACGGATCGAGCCGGCGGCGGTGGCTCCCGGCGGAGGCGGCAGCGGTGGCGGCGCAGCTCCATCACGGATCGAGGTGGCGGCAGCGGCTCCCGACGGAGGCGGAGGCGGCGGCAGCAGCGGTGGCAGCTTCGACTTCGCGGTGTGCTCCACCGTGTTTTGAGGCGGCGGCGGCTGGGCGTGCTCTTTCAGTCCTCCTCCCGTCTCCAACTCCCCCCAAGACGTACTGTGGTTCCCATCGTAGCAACTAGCAACGGATTCTTTGGT
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| Protein seq | TLGVFGSALFERSACSRSHGGGGGFTGPGLRRCGFTTDRAGGGGSRRRRQRWRRSSITDRGGGSGSRRRRRRRQQRWQLRLRGVLHRVLRRRRLGVLFQSSSRLQLPPRRTVVPIVATSNGFFG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr11 | 5710987 | 5712169 | - | OsARC_11g0006940.01 | OsARC_11g0006940.01,OsARC_11g0006940.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.082348 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007020 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006920 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016530 | RBH | 0.0 | 7.589219 | 3.204484 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0091300 | RBH | 0.046897 | 0.042248 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016400 | RBH | 0.0 | 0.0 | 0.479570 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0092600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016290 | RBH | 0.000000 | 1.972857 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
