Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_09g0016390 OGI:09058480 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr09:21233145-21238392
Gene Symbol -
DNA seq

CACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGACGAGGATGAGGAGTTCGGGGGCCGCGGGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGGTGCTGTCTGTGAATTGCGATCAATGCCCTTGCGTGTTTCGTTCCGTCGTTCAAATGAGAGAGGCCCCCCCTTTTCGGATTTCTGGATAGCGAGTGGCGCTGCTGTTGTGGTGATGGTGATTTGTGGCTTTGATGCTGATTCGGTTTTGGGTGCGAGAATCCTGCGTGTTCTGTGGTAATTCGACGTTCTGAGCGACAGGTGCAATGCGATGTACGAGTGGTTTATGCTTGTATGGTGATGGTGATTAGTGTCTTTGATGATGATCGGTTTTGGGATCAGAAACCCTCGCGTATTCTGTGGTCATTTGATAGAATTTCTGGGAAACAGGTGCAATGCGATGGTGGTGTGCTTAGAGTCGCAGCGAAATTTGTTCATGGCTTCTCTGCTTTACAGATAGCAAAACGTTTCATCCTTCGGGGAAAAAAATAGCAAAACATTTACCAAGATCTCAATAGATTATAGATATGATGTTTTCTCTTCATAAATTGTTTCGATAGCTTGGATGGTTGTTTACTCTACAGATTGAGAGTTTGAGACTGCTATTTTCCTTCTCTGCATTGTATGTCATTAACGTAATTGTGTTTTGGTCCTTTTGTTCATGCTGCCCTGCCTTTCTGTTTCTCTATTCTTAATTCTTGTATACTTGGTGTCAGAACTAACTCAAAATCTCAAATGGGCCTCTTCTGTGTTCATTTTCTTATGAACAGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGTCAGTGCCGCCGCTCCAGCAGCTCGTCCTTTCTGAACACACTCTACTGTTTTATTTCCGTTGTAGTGAATTTGAGAAGCCCATCTCATGTATCTCTTGTTTACAAGATGTACTGCAAATGCTTTGTGTAGTTATATGTATATGTAATAGCATTTTCTTACTGCTGGCCTGCCACAAAGGTAGGATGCTTTTGAGCTAAACTAGAAGATCCTTTTCTATGTTAACAATGTATCTTCATTTTGTTGTTCAGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGGTAGAATTACATTCCTAAAAGATATGGAGCTTCATTGGGTTTTTTTTTATCATATTGTATCATATCTGGTTTGAATTGGTGACTAATGTAGTTAACTGCATGTTGTAATTTCTATTTGTTTCTTTGGTTGCAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGTCTATCTGTCTCTCTCTCTCTCTCTCCATCACTCATTTTTACATTATAAGTTCTTTGTGACTTCAAGATTTTGTTATTTTACTTGTAACATTACGAATTGATTGCTATTGTAACTATAACAAATTGATAGATGACTTTGTTGTTCTCACTTTCAGTAGTTTGTAGCATTCTTGTTCTTAAAAGAATTCTGAAATTTATGGTGCTAAAATGAGGTAAATTTTCAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGGTAATTCTTTAAAGTACTCAGCGCTCATAATGGTTCACATTATCGTTCTCCCAATTATGTTTATTAAACCTTACTGTATTGCCCATCAGATAGTAGTACTATTTACTATTTACTATATAGTTGGTATATACTTGCTTATATTTATGCCAAGTGTCACCCCAAATGGTTTTCAAAAAAACATATTTCTGAAGTAATAAAAATTAATTCCTGCAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATGTCGGTATTTCTTTATTTATTTATTTACTTGTATACCTTTCAGATTGATTGTTTGATATTACCAGTTAAATCTTTGGTAAATGCAGTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGTTTGTCGCACACATAATTTCCTTTTCATTCTTGTATTTGATAGTATGTCTTGTACTTTATTCTTTCCATCTTGAATATTTCTTGTGTAAAATACTTTTTTTCTTTTTAATTTCCTAAGTTCATAAGGAAAAACTGGAAGCTGTTTCTCAAGTGTTGTTTTCTCCCCCAGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTAAGCTTCCCTCTCGGCATATTTGTTTTGATGGTGATTGTGTACATTTTGCATTGAAATTGTTTATCTTTGGTCTGATTTTCCATGGTTGCAGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGGTATATTTCATCTTGGATACTGTATTGTGCAAGAAGAATCGTGATTTTTACCTTGCTAGAATAAGCTTTTCTATTGCTACCTATTCATGTGTTTGCTCTAGTCTTTTATACTACTTTGCTGTGTATTTAATTTATTTGTTTTCCTTCATGCCAATAATCTCTTGTAATGTTTTCCTCATGTTTCAGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACAGTATGTCTAGGATCCAGTCACTTTACATAGTCTTTATCTGATTTTTTATGGTATTCATGCTTCTACATGCCCTTTTGATTTTCATATGGACCATGTAATGTGTATAGTAAGCTCATTAGGTTGGAGACTTTTAGTTTTGCTGACTGGAAGGATCTAATTTCATGTTGCTGCTGCAAAGTACAGCGTCTGGCACTAATGTCCTTGGCAAATCAGTTGTCTACTTACTTTTCATTTTATATTTACCATCCAATATTATGAGTGGTAAACACATACACAGTGCTTTATTTTATATTTATCTTTCTCATACTTTCATAACAATTTTCCACAATGCTGTATATTTCCATTCAATTTTCGCATACATAATGTGAAGGGTCTGCCATAAATTTACATTTTAGCTGTACTTTTATGTATGATACATTTTCTGTTTTCTTTTCCCTGTTGGCAGTCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATGTAAGTTTTACATTGGACCATGTGTACAGCATTTGTGGGTCATAGCAGAAGTTTGATTTTATTAATACTTGTAGCAAAACTCACTGTTTTGGCAGTCCTTTTATCAGTTGTAAATACTTTTAGTTTGGACTTCTGTGATGTTTCAGTTTTGCGTTTGACTATTTTCTCATGTGTATAGCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAGGTTAGATATTATAAATCATTTTCTATTGCCCATTGACTGTTTATGTAATTTACATGTTCATTATTCGTTGTGACAGATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTAGTAGATAATTTCTGCCTTGCCAAGTAGGCGCTTATGCATACTTGACGGCTGTACATGTTTTAAAATTTATAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGGTATTGCAGAGATATCTTCACTCATCATCACTTCAGTGAATTTTTGTGAATGTATTTGCCGTTAATTTTGTAATTTACTTGGATCTGAAGGGCACACGCTTGCTCCAACCATCACTGTTATCCTTGCAGTGTCGCTTGCTTCATGCATGATGCAAATGTATATTTTCCAAATATCCATGAACTGCTCAATATGTCACTATGCAGTGCCAAATTTGCTTGATCATTTTATTCACTATAAGACTTGCATGTTTATGAGTATGTACAGCAACTAAGCCTTTTTGAGAACATGATCTAAGCTAAATATTTCATTGCAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCAGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAG

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CDS seq

ATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGACGAGGATGAGGAGTTCGGGGGCCGCGGGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAGATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCAGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAG

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Protein seq

MGSDEDELLDDEEYYYYCSDGECSGGGSGSDEDEEFGGRGSDEGCEADEVVSTREQRYVVLTEDDIRERQEEMISRVSAIFSVPRESACVLLRHYKWSISKLSDDWFADEENVRRSVGLPSNVVHVPDCPELTCGICFEGCAANAMSCAGCSHFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMINSLTKDEDKVKYARFVLWSYIGVNNKIKWCPAPDCTCAVEFLGDGNYDVSCKCKFSFCWNCAEEAHRPVSCDTVSKWILKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGDGTGGFYACNRYQSAKMGGMYDEAEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKVENEDLTKLSDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERLHKCAEKDMREFLPTADSTQPSLSLQDFGEFRVKLSGLTSVTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPPTNTKGKSGRSKVARTSQERSGDRWPCDRCTFINPSSTNSCNMCGRNKPRRR

Function Probable E3 ubiquitin-protein ligase ARI8 [UniProtKB/Swiss-Prot:Q8W468]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_09g0016390 OsARC_09g0016390.01 Chr09 21233145 21238392 + NAM
CDS seq

ATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGACGAGGATGAGGAGTTCGGGGGCCGCGGGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAGATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCAGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAG

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Protein seq

MGSDEDELLDDEEYYYYCSDGECSGGGSGSDEDEEFGGRGSDEGCEADEVVSTREQRYVVLTEDDIRERQEEMISRVSAIFSVPRESACVLLRHYKWSISKLSDDWFADEENVRRSVGLPSNVVHVPDCPELTCGICFEGCAANAMSCAGCSHFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMINSLTKDEDKVKYARFVLWSYIGVNNKIKWCPAPDCTCAVEFLGDGNYDVSCKCKFSFCWNCAEEAHRPVSCDTVSKWILKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGDGTGGFYACNRYQSAKMGGMYDEAEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKVENEDLTKLSDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERLHKCAEKDMREFLPTADSTQPSLSLQDFGEFRVKLSGLTSVTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPPTNTKGKSGRSKVARTSQERSGDRWPCDRCTFINPSSTNSCNMCGRNKPRRR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.192617 0.021371 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0513800 RBH 1.383984 0.992819 3.554820
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g33876 RBH 0.945471 0.671432 0.923585
Nipponbare | IRGSP 1.0 | RAP-db Os09g0513800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0016410 RBH 0.166827 2.358818 2.570493
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0016400 RBH 0.259548 0.000000 3.297464
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0016650 RBH 1.248397 0.0 7.926042
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0024020 RBH 0.703007 0.631636 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0016520 RBH 0.998733 0.0 1.349353
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0336600 RBH 1.321257 2.163985 4.7091425
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0016390 RBH 0.046184 0.0 0.182284
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0323700 RBH 6.22613 5.849644 2.69864
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0016390 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0016200 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0016300 RBH 4.169472 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0016150 RBH 0.131975 0.0 0.109885
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0016280 RBH 0.059932 0.703890 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G016710 RBH 0.497135 0.000000 0.960938
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0016510 RBH 0.134934 0.0 2.804890
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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