Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0013910 | OGI:01056490 | 3/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:18031214-18033183 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggttttcccttcaggaacaaacataaattttgcacgtctactcttgttagtagaagtagtagaggagaaatcgttgaggaagatttttcatttgaatcatgcAaaaaaAGTTTTCTTAGTTTTTAGTATAGTTATTTAAAGAATAGATAAAAATAAGATTGCGTCCAATAGGATTTGAACCTATACCAAAGGTTTAGAAGACCTGTCCTATCCATTAGACAATGGACGCTTTTTTCATATTTTCTTCTTTCTTTTCATTTTTTATCGGACCAAGAGAAAAAACTGTTAGACCAAAACTCTTTTAGGAAAGAAaaaacaaatgcatatacaaatgtatgatgcatatatcataaagaaggaatatggagcgggtagtgggaatcgaacccgcaaccccacggttatgagcctcattagactgtagtaaaaccaaattggactataggacacatctatctcttgggcaaccaattaggtaaatcacaaattaaccaaatatgtagttatgtacatagtcatatttacattcctaataaatgtagattctttttattatctatgaggttcatagatagatatttaggatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgTAtatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| CDS seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggaacaaacataaattttgcacgtctactcttgatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgTAtatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| Protein seq | MSLLLRRPPGREAYLGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVARKSKLELAQFAELKAFAQFASALDKTSQNQLARGRRLRELLKQFQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERNKHKFCTSTLDVKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFCLEVSTSKETSLKLPIGGRGRVINVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLVGDLIKKHYRIAPFDERYQQEASGKLVFSELYEASKQTKIRGYLNPSTREKAEYLMEEQETPSNSLF |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0013910 | OsARC_08g0013910.01 | Chr08 | 18031214 | 18033183 | + | NAM | ||
| CDS seq | atgtcccttttattaagaagaccccctggccgtgaagcttacctaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctcgcaaatcaaaattggaattagctcaattcgcagagttaaaagcctttgcacaattcgcctctgctcttgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaattccaagcaaatcctcttccagtggaagagcagatagctactatttatatcggaacaagaggatatcttgattccttagaaattggacaggtaaagaaatttttggatgagttacgtaaacacctaaaagatactaaacctcaattccaagaaattatatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacaactcgaacggaacaaacataaattttgcacgtctactcttgatgtaaaaatcactaaagaaataccacatctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgggtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcctatatcgcggaagctggattattacgggccatattttgtcttgaggtatccacttcaaaagaaacttctctcaaactaccgataggtggaagaggacgcgttatcaatgtgaaatggatccagagggatcccctcgacataatggttcgtgTAtatattttacaaaaacgcgaaatcaaagttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcctaggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagtaggggatctgataaagaaacattatagaatagcaccctttgatgagagatatcagcaggaggcttcaggaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaatccgtgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagaccccttcgaacagcctgttctaa
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| Protein seq | MSLLLRRPPGREAYLGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVARKSKLELAQFAELKAFAQFASALDKTSQNQLARGRRLRELLKQFQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERNKHKFCTSTLDVKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFCLEVSTSKETSLKLPIGGRGRVINVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLVGDLIKKHYRIAPFDERYQQEASGKLVFSELYEASKQTKIRGYLNPSTREKAEYLMEEQETPSNSLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.479764 | 0.062354 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013710 | RBH | 0.000000 | 5.991801 | 7.182114 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013620 | RBH | 17.790222 | 0.000000 | 21.770741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013891 | RBH | 280.727295 | 11.331708 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030310 | SBH | 5627.881348 | 21.796021 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019770 | SBH | 318.028931 | 0.0 | 121.187912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004600 | SBH | 0.0 | 0.0 | 0.136038 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004550 | SBH | 0.0 | 0.0 | 2.005213 |
