Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0018390 | OGI:07060900 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:21338314-21341997 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagagcgtcaggcaggtgagaggcttatatatattgggtagaaatgaaattaatatatccactaatacatgaagccccaaaataaaatttgggtgcttagtagagccaagcaaaccgaattctgcacggttaatttcaggctattcttacaagcttactacgtgatggggttcttgctctgcatcaaaattctgcgcctatagcacaagcacggttgttgcatcggacactggatgcaaatctgtcacttgacgctttgctcctcagcagcggcagagagcttgtacttgaggtaggctctgatgaaggtgtccagctcgccgtccatgacgccggtgatgtccgacgtctcgcaggcggtgcggacgtccttgacgagcttgtaggggtggaagacgtagttgcggatctgctgcccccactccgccttcaccgcgtcgccgcggatctgcttgatctccgacgcccgctgctcctcggcgatcaccagcagcttcgccttcagccggctcagggcctttatcttgttggccaactggctcctctcctctgcgaggtttcgcaaggaaaagatgtggaaaattactcatgtagctacagttcttgatgcaaaattgcaaatacatttcaatggcaaattctcaggtacacagttaagtcatggtgtttatgtgataaaactgaatttagctgcacatttaactatggtcacaacgagggattatgaggcttcaatcatttggaggatgtcttgctcagttctttactttacttcaacgattaccaatttcactttttcttttttgggtcttttgatgaccacatcatatcaaactaagattgggggtcttacccaaacatgacaaaactacctatttatgcaacatatgtgaaggcatagagccaagaattagcagatattcagatccacagccctaacgaagatatgacacatcatgcaagctgcactgactgtctttgagtacaaacctgtgcaacgaacagcgatgcccgtgggtatatggaccatgcgaacagccgtctccaccttgttcacattctggcctcctttgccgcctgctctagtgaagcttatctccagatcctcttcgggtatttctacatccatggactcttctggcagtagaggcattacttcaacaccagcaaagcttgtctaaagaaattagcacattgaacagaaaactgagcatgagtagatgtcttttcctttcaaagttgcgagaatatgtatatgaatcgcaaaagaggaactgaaaaactacacatacctgcctaagccctttagcattgaatggggactgacgaacaattctgtgtgtccctttctccccagagagatacccataggcatatcttccttctaattcaatggtagctgattttattccagcttcttcaccaggggatttctcaaccactcttgtcttgtaccgctgcttctctccccacctaacatacatcctcagtaacatgtcagcccaatcctacaaatataagccattaaaaaaattataatcacaacttgctcttctacaatatgttttttctccagaaaaacacgaaacatcatctatcgccattcttatatgagataaactcatgtaagttgaactgcacatctttagaattacatatactactacatatataaagtttgcgttaaatcctgacacctggaaatccagttatgtacactatggattaataatcatcaagaaggtcattatcatatcatacattcacatttgcactagttttctagctgatgttaggtcgtcttttacagtaacagatagaaataggacatgtatgaaaaagttatgacagtggtacatatttggtactagaagtataatatcgacaataataaaagctaaattttctacaagcacaacaagactaaatgaacaagtcataagatcctagaaaactaagacaaaaatcatctttcctacattgtgagctaagaaggaagcatgagaattagtgaaagcatacctgggcatcggtgccaccagcacctgcagtaatattaatcacagcaccttccttgtcataaggtccagaaagaagctgtgtcatctcaaagttatctagtgctttgtttaatgcctttatgatctttgaggcttcttcaagaaggccagtatctatggaatctaactcctcagtaagctttacaatggtctcagcttcttcaacctgtaaataacaatggaaaggacacaattaagaactagtgttggtaaccaattaattccagaagtcatgttcttcaaccaaaatggatagcctctgtcaattctcagctgtagtatggatatatgcagcaaatctgtactccctccgtccccaaaaaaaaaaaaaaaacctaggtgaggattacacaccacctaggacaacaaatatggacagtggtattaaatccccacctagattggtttctttttgggacggagggggtacatatttttattagttatcattacttgtatttatgaacgcggcaaatccacattataataatgagaattactaatttactacaggaggtgttaaacaatcatttcaatatatatagctatagtataataacaattagaattctacatcattctgtatcatctctagtatgggatgaagaagaatatcaagttggttaaacctgcaacttcaaatcgttgagaagcttgactctgtctttgacctctgtcagagcaacaagtatctcctgtgccttggaaggatcatcccacaaggaactatctgcagatttcttctcgagcgaagcgatttcctcctcaagctgatccaaaccagcagactgcctgacttcactgacgcgcgctacagccagctcgacatccttccgcaaagcgtagaaatctgtcaccaacttctaagcataaggatcaaaaccctggcattcatggtctcatgggctgaaagaaacacaatctgctatcctgatttgagaatgtggtggggaaattggttaccctgcatggcccattcggtagcctccgaactttctgcaacgcttgattggcttcctgacccagaggatgcagattgcactgtgttgacccaagtctgtcaatgtttcatccagaggataagataactaaagcataaaatgaaaccattttttccctattcaagctagcatctcttccaattgtcgagttcgcacacaatgcaaaacaagaaattcttgcattatgcatagtactccatagctaacatcaagtatggtacgagtagtttaatcgcaaaaaaaaaaaaaggaaaaaaaacctgcaatacttgcacgagtacaaggaaagtaagaaccgaagctcaccaggaacggaggacctgcggcggtggctgacacggcaatatacgggtacgggagggactccggcggtgcagaccctccggtgagcggcggagctggggtacggagaggcgcgcgcggccgccaggagcagccgcgggcagtcaatcattgccgcacttcggctacaggacatggagcgggagtgggcgaagatggccaccggtaggcgacgcgccgacgagggtgtggggctggggcggcggcggcggctcgccggcgagcggagcggggcggagaggaggcgaggcgggagtagaagcgagcgactggcgaagggg
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| CDS seq | atgattgactgcccgcggctgctcctggcggccgcgcgcgcctctccgtaccccagctccgccgctcaccggagggtctgcaccgccggagtccctcccgtacccgtatattgccgtgtcagccaccgccgcaggtcctccgttcctgtgcaatctgcatcctctgggtcaggaagccaatcaagcgttgcagaaagttcggaggctaccgaatgggccatgcaggatttctacgctttgcggaaggatgtcgagctggctgtagcgcgcgtcagtgaagtcaggcagtctgctggtttggatcagcttgaggaggaaatcgcttcgctcgagaagaaatctgcagatagttccttgtgggatgatccttccaaggcacaggagatacttgttgctctgacagaggtcaaagacagagtcaagcttctcaacgatttgaagttgcaggttgaagaagctgagaccattgtaaagcttactgaggagttagattccatagatactggccttcttgaagaagcctcaaagatcataaaggcattaaacaaagcactagataactttgagatgacacagcttctttctggaccttatgacaaggaaggtgctgtgattaatattactgcaggtgctggtggcaccgatgcccaggattgggctgacatgttactgaggatgtatgttaggtggggagagaagcagcggtacaagacaagagtggttgagaaatcccctggtgaagaagctggaataaaatcagctaccattgaattagaaggaagatatgcctatgggtatctctctggggagaaagggacacacagaattgttcgtcagtccccattcaatgctaaagggcttaggcagacaagctttgctggtgttgaagtaatgcctctactgccagaagagtccatggatgtagaaatacccgaagaggatctggagataagcttcactagagcaggcggcaaaggaggccagaatgtgaacaaggtggagacggctgttcgcatggtccatatacccacgggcatcgctgttcgttgcacagaggagaggagccagttggccaacaagataaaggccctgagccggctgaaggcgaagctgctggtgatcgccgaggagcagcgggcgtcggagatcaagcagatccgcggcgacgcggtgaaggcggagtgggggcagcagatccgcaactacgtcttccacccctacaagctcgtcaaggacgtccgcaccgcctgcgagacgtcggacatcaccggcgtcatggacggcgagctggacaccttcatcagagcctacctcaagtacaagctctctgccgctgctgaggagcaaagcgtcaagtga
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| Protein seq | MIDCPRLLLAAARASPYPSSAAHRRVCTAGVPPVPVYCRVSHRRRSSVPVQSASSGSGSQSSVAESSEATEWAMQDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKYKLSAAAEEQSVK |
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| Function | Peptide chain release factor PrfB1, chloroplastic [UniProtKB/Swiss-Prot:Q9LVY0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0018390 | OsARC_07g0018390.02 | Chr07 | 21338314 | 21341997 | - | NAM | ||
| CDS seq | atgattgactgcccgcggctgctcctggcggccgcgcgcgcctctccgtaccccagctccgccgctcaccggagggtctgcaccgccggagtccctcccgtacccgtatattgccgtgtcagccaccgccgcaggtcctccgttcctgtgcaatctgcatcctctgggtcaggaagccaatcaagcgttgcagaaagttcggaggctaccgaatgggccatgcaggatttctacgctttgcggaaggatgtcgagctggctgtagcgcgcgtcagtgaagtcaggcagtctgctggtttggatcagcttgaggaggaaatcgcttcgctcgagaagaaatctgcagatagttccttgtgggatgatccttccaaggcacaggagatacttgttgctctgacagaggtcaaagacagagtcaagcttctcaacgatttgaagttgcaggttgaagaagctgagaccattgtaaagcttactgaggagttagattccatagatactggccttcttgaagaagcctcaaagatcataaaggcattaaacaaagcactagataactttgagatgacacagcttctttctggaccttatgacaaggaaggtgctgtgattaatattactgcaggtgctggtggcaccgatgcccaggattgggctgacatgttactgaggatgtatgttaggtggggagagaagcagcggtacaagacaagagtggttgagaaatcccctggtgaagaagctggaataaaatcagctaccattgaattagaaggaagatatgcctatgggtatctctctggggagaaagggacacacagaattgttcgtcagtccccattcaatgctaaagggcttaggcagacaagctttgctggtgttgaagtaatgcctctactgccagaagagtccatggatgtagaaatacccgaagaggatctggagataagcttcactagagcaggcggcaaaggaggccagaatgtgaacaaggtggagacggctgttcgcatggtccatatacccacgggcatcgctgttcgttgcacagaggagaggagccagttggccaacaagataaaggccctgagccggctgaaggcgaagctgctggtgatcgccgaggagcagcgggcgtcggagatcaagcagatccgcggcgacgcggtgaaggcggagtgggggcagcagatccgcaactacgtcttccacccctacaagctcgtcaaggacgtccgcaccgcctgcgagacgtcggacatcaccggcgtcatggacggcgagctggacaccttcatcagagcctacctcaagtacaagctctctgccgctgctgaggagcaaagcgtcaagtga
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| Protein seq | MIDCPRLLLAAARASPYPSSAAHRRVCTAGVPPVPVYCRVSHRRRSSVPVQSASSGSGSQSSVAESSEATEWAMQDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKYKLSAAAEEQSVK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0018390 | OsARC_07g0018390.01 | Chr07 | 21338314 | 21341997 | - | NAM | ||
| CDS seq | atgcaggatttctacgctttgcggaaggatgtcgagctggctgtagcgcgcgtcagtgaagtcaggcagtctgctggtttggatcagcttgaggaggaaatcgcttcgctcgagaagaaatctgcagatagttccttgtgggatgatccttccaaggcacaggagatacttgttgctctgacagaggtcaaagacagagtcaagcttctcaacgatttgaagttgcaggttgaagaagctgagaccattgtaaagcttactgaggagttagattccatagatactggccttcttgaagaagcctcaaagatcataaaggcattaaacaaagcactagataactttgagatgacacagcttctttctggaccttatgacaaggaaggtgctgtgattaatattactgcaggtgctggtggcaccgatgcccaggattgggctgacatgttactgaggatgtatgttaggtggggagagaagcagcggtacaagacaagagtggttgagaaatcccctggtgaagaagctggaataaaatcagctaccattgaattagaaggaagatatgcctatgggtatctctctggggagaaagggacacacagaattgttcgtcagtccccattcaatgctaaagggcttaggcagacaagctttgctggtgttgaagtaatgcctctactgccagaagagtccatggatgtagaaatacccgaagaggatctggagataagcttcactagagcaggcggcaaaggaggccagaatgtgaacaaggtggagacggctgttcgcatggtccatatacccacgggcatcgctgttcgttgcacagaggagaggagccagttggccaacaagataaaggccctgagccggctgaaggcgaagctgctggtgatcgccgaggagcagcgggcgtcggagatcaagcagatccgcggcgacgcggtgaaggcggagtgggggcagcagatccgcaactacgtcttccacccctacaagctcgtcaaggacgtccgcaccgcctgcgagacgtcggacatcaccggcgtcatggacggcgagctggacaccttcatcagagcctacctcaagtacaagctctctgccgctgctgaggagcaaagcgtcaagtga
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| Protein seq | MQDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKYKLSAAAEEQSVK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0018390 | OsARC_07g0018390.03 | Chr07 | 21338315 | 21341990 | - | IsoSeq | ||
| CDS seq | atgcaggatttctacgctttgcggaaggatgtcgagctggctgtagcgcgcgtcagtgaagtcaggcagtctgctggtttggatcagcttgaggaggaaatcgcttcgctcgagaagaaatctgcagatagttccttgtgggatgatccttccaaggcacaggagatacttgttgctctgacagaggtcaaagacagagtcaagcttctcaacgatttgaagttgcaggttgaagaagctgagaccattgtaaagcttactgaggagttagattccatagatactggccttcttgaagaagcctcaaagatcataaaggcattaaacaaagcactagataactttgagatgacacagcttctttctggaccttatgacaaggaaggtgctgtgattaatattactgcaggtgctggtggcaccgatgcccaggattgggctgacatgttactgaggatgtatgttaggtggggagagaagcagcggtacaagacaagagtggttgagaaatcccctggtgaagaagctggaataaaatcagctaccattgaattagaaggaagatatgcctatgggtatctctctggggagaaagggacacacagaattgttcgtcagtccccattcaatgctaaagggcttaggcagaagagtccatgg
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| Protein seq | MQDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQKSPW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 21339450 | 21339606 | - | OsARC_07g0018390.01,OsARC_07g0018390.02 | OsARC_07g0018390.03,OsARC_07g0018390.02,OsARC_07g0018390.01 | All |
| A3 | Chr07 | 21341414 | 21341681 | - | OsARC_07g0018390.03 | OsARC_07g0018390.03,OsARC_07g0018390.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.101916 | 0.033288 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0546600 | RBH | 4.819716 | 3.769652 | 0.682743 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36250 | RBH | 3.224249 | 2.536462 | 0.250053 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0546600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018630 | RBH | 0.212620 | 2.936918 | 2.426868 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018550 | RBH | 0.882111 | 0.658950 | 1.270044 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018490 | RBH | 2.349164 | 0.000000 | 2.544183 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018480 | RBH | 16.130327 | 6.116348 | 23.151699 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0354200 | SBH | 28.180032 | 26.557579 | 26.3529095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018980 | RBH | 1.787700 | 0.000000 | 1.452740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366200 | RBH | 20.5454085 | 14.947567 | 26.2745735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018260 | RBH | 0.135776 | 0.044008 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018410 | RBH | 2.205773 | 4.980882 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018260 | RBH | 10.088924 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018570 | RBH | 2.300339 | 0.221421 | 1.409666 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018370 | RBH | 1.273695 | 0.897578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018240 | RBH | 0.414862 | 0.0 | 0.881071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018350 | RBH | 5.111468 | 10.464577 | 6.191633 |
