Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0024630 | OGI:05071640 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:27110880-27112855 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTTATACCTCCCCACAAGAGAGGCAAAATCCGCTCGCTCTCAGACTCGCGACGCCGCCTTCTTCTTCGATCCCCTCTCCCTCCGATCTCCCCCTCCCCCGCAGGTAAATCAGAGAAACCCCCACTAGATTTCGAATCCAAATCGAGGCCTCTTCCTCACGATCTCACCGCATTTGCTGTTGCGATTCCCACCTCGGGGTTTTGTGGTTCGGTTTGGAGCAGATCTAATGGCGGCGCTGGCGTCGAAGCTGGCACAGATGCAGGCGAAGGTGTGCGACGCGGCGAGGTTCGCGGCGAAGCACGGGTGCGCGTACCACAGGGCGCTCATGGAGAAGAACCAGAAGTACGTCGCCGACCCGCCCACCATCGAGAGGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGGTCGGTCCACCCTCACGATCTCCCTCCACCTTCTCCACGATCTCTTAGTCCTCCACATCTGAATTATCTCTATTGTTTAGATTGCGCACTCCATTAGAACACGATCTCGATCACTTCCACATTATGGAAGGCCGAATATGGGATTCTAATCATCTATGGCGAAACCTAATTATGTTGCCTAATTAGATAGACCAGCAATTTTGGCTGATTGTTTTAATTGAATAAATTAGCAGCACATCATGTAAAGTGACAATGCAGGAAATTGGTACCATTGAAAGTCTGGAAATTGCAGTGTTGAAAAGTGTGTTATTTTTGGTGATGTTCTCCTGCTATATCGGAAGTTAGAATAATGATCAGCGATGTCTATTCCATCCATCCTAATAATGGAATCTATGCTTCCCGTCTCTTAGAAGCTGAGCAATGCATAATGCATAATGGTCATGTTGTGAACATAGTCCATAGCGATGCATTGCAACCGTGTTTTGAGGATGTTAAGTATTTTTGCTGAACAAGTTGTCACGTTGCATGCAATTAGCCATGGAAAACAAGTTCCTCCTAAATTCTATGTAAATGAAGACGCAAGAGATGGGTAGTGGGTTTATATGGTAATGTGGGTTGAAAGTCACTGATCTTGGCCTTAGCAAGATTGATCTGATGAGAAGCAAGCTTTATTTGAGTTTTTTTTAACTGTGAGAAATTACTTTGTTTTGAGCCAATGCTTTTCTCTTGGACAGAGTCCCAGGGATGTAATTGTTCCTGATCAGCCATTTTGTCTTCATTTGTCTTTTGAGAAGACCGATACTAGTTATTTGTTTGAGCTGCATTTTGCTTGTACTTCATAGAGATAGAGTAGTAGTTTGTCTATTTCACCATTATTATTCATCCGTGTTGTGCTAAAAGTGCGCCTTCAGTGCACATTCCTCTGGTTGTCTTTGCCAGTGCTATTATGAATTATAATATACATCTGATATGGTGCCATAATTTGATGATTCATTACATAGGTGACAGAAGATACTTGATCATTCATTTGATACCATAATTTCACTCACATTATAAGGTGCATTTCGTATCTTCAATCTCTGTGTCTTTACTGACTAGTGACACATTTCTTGCAGCCTTCCTGGTCGCTATGAGGCATTCTGGAAGGAAGCGGATCAAGTGAAGAACTTCTGGAGAAACAGAAAGGATCTGAACGTTGAGCATGCTGGCGTTGCTGCACTTTTTGGCATTGAGTTGTACGCGTGGTTCTGCGTTGGTGAGATCGTTGGTAGAGGATTTACTTTCACTGGCTACCATGTCTGAGTGCTAAGCAACCACATTAGTCGCCGACTCGCCGTTTCTCATTGAAGACTCTGCTAGAGTGTTAGGATATCAGTTTTTTGAGATGGGATGACTGATTGATTCAGAGTTTTGTTTTCCGAAATTTCTCGATGCTGGTGTAACAGACGGCTCAGTTAAACCAACATGACGAAGTTCAATAATTCAGTGAATCGTAGTTGAAGTATGCAGTAATTTTTCTCCGATATTTTATTGAATATTGATGCCATTGATTGCTTT
More
|
||||||||||
| CDS seq | ATGGCGGCGCTGGCGTCGAAGCTGGCACAGATGCAGGCGAAGGTGTGCGACGCGGCGAGGTTCGCGGCGAAGCACGGGTGCGCGTACCACAGGGCGCTCATGGAGAAGAACCAGAAGTACGTCGCCGACCCGCCCACCATCGAGAGGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCCTTCCTGGTCGCTATGAGGCATTCTGGAAGGAAGCGGATCAAGTGAAGAACTTCTGGAGAAACAGAAAGGATCTGAACGTTGAGCATGCTGGCGTTGCTGCACTTTTTGGCATTGAGTTGTACGCGTGGTTCTGCGTTGGTGAGATCGTTGGTAGAGGATTTACTTTCACTGGCTACCATGTCTGA |
||||||||||
| Protein seq | MAALASKLAQMQAKVCDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLASLPGRYEAFWKEADQVKNFWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0024630 | OsARC_05g0024630.01 | Chr05 | 27110880 | 27112855 | + | NAM | ||
| CDS seq | ATGGCGGCGCTGGCGTCGAAGCTGGCACAGATGCAGGCGAAGGTGTGCGACGCGGCGAGGTTCGCGGCGAAGCACGGGTGCGCGTACCACAGGGCGCTCATGGAGAAGAACCAGAAGTACGTCGCCGACCCGCCCACCATCGAGAGGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCCTTCCTGGTCGCTATGAGGCATTCTGGAAGGAAGCGGATCAAGTGAAGAACTTCTGGAGAAACAGAAAGGATCTGAACGTTGAGCATGCTGGCGTTGCTGCACTTTTTGGCATTGAGTTGTACGCGTGGTTCTGCGTTGGTGAGATCGTTGGTAGAGGATTTACTTTCACTGGCTACCATGTCTGA
More
|
|||||||
| Protein seq | MAALASKLAQMQAKVCDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLASLPGRYEAFWKEADQVKNFWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0024630 | OsARC_05g0024630.02 | Chr05 | 27110880 | 27112855 | + | NAM | ||
| CDS seq | ATGGCGGCGCTGGCGTCGAAGCTGGCACAGATGCAGGCGAAGGTGTGCGACGCGGCGAGGTTCGCGGCGAAGCACGGGTGCGCGTACCACAGGGCGCTCATGGAGAAGAACCAGAAGTACGTCGCCGACCCGCCCACCATCGAGAGGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCCTTCCTGGTCGCTATGAGGCATTCTGGAAGGAAGCGGATCAAGTGAAGAACTTCTGGAGAAACAGAAAGGATCTGAACGTTGAGCATGCTGGCGTTGCTGCACTTTTTGGCATTGAGTTGTACGCGTGGTTCTGCGTTGGTGAGATCGTTGGTAGAGGATTTACTTTCACTGGCTACCATGTCTGA
More
|
|||||||
| Protein seq | MAALASKLAQMQAKVCDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLASLPGRYEAFWKEADQVKNFWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 27110880 | 27111298 | + | OsARC_05g0024630.01 | OsARC_05g0024630.02,OsARC_05g0024630.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.857378 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0600000 | SBH | 4.810289 | 8.798863 | 29.503340 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45740 | RBH | 0.0 | 0.000000 | 2.544164 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0533800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024820 | RBH | 0.0 | 3.685579 | 14.228258 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024630 | RBH | 0.0 | 2.680713 | 0.831001 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024610 | RBH | 0.0 | 8.350042 | 5.678834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024660 | RBH | 2.085103 | 9.375018 | 14.348620 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0411400 | RBH | 5.1240215 | 2.9923635 | 5.677451 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024240 | RBH | 0.0 | 2.326487 | 0.327950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0422500 | SBH | 8.2704585 | 22.2525155 | 14.2643635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024450 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024320 | RBH | 0.0 | 36.860477 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024510 | RBH | 0.0 | 12.939022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024510 | RBH | 0.246424 | 2.604202 | 0.611457 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024570 | RBH | 0.0 | 13.251677 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024000 | RBH | 0.0 | 16.662069 | 3.441415 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024450 | RBH | 0.0 | 16.161068 | 6.956816 |
