Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0006240 | OGI:05015990 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:5799998-5806035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGAGGTATCCGTCTCCGTCTCCTCTACCAATAAGAGAAAGGCGGACTCCGCCGTTGACGGAGGACCAGAGGAGGAGCATCCTCCGGCGAAGAAGATGTGGCTGCTGCCACAGGAGGAGGTGGACTGGATCCTTGCCGAATCCAACGAGCCCGTCTCCACCGAGTTCCATGAGCTCAAGCGCGCCAGCCCGTCGCTGGTGCCCTTGCCGGAGGAGGAGAAGGACGAGGGCGGAGGTGGCGGAGGTGTTCAGGCTGTACGACGAAGCACGGGAGGAGGTGATGGGACACTGGGATCATCTTTCAGATAGCGACGACGACGACGAAGATTGGAAGCTTTTCATTACGGCAATTAGGAGGACCTTCATCTGAATCGAATCTCAAAACCCATCATCACAGTTTCTCTTATCTTATTATTTAGTATCTTGTAAGAACAATTCAATGTACGGATGCATCTATTCACAGAAATTTTAAGTGTGTTGTGTTGATCGACCATCATTCTTTATTGTTAATTATTGGTTTACACGGTTGTGCGCTCTGTTCTTGGTGTTCAGCCCCTTTCGTTGCAGGAAGCCTCGTACAATTCAGAGCTATGTAAAAGCAAAGAGCTTTGTTACGGTCCACCAAATAAAATCCAGCCGTTGAATTAGCGGGGGTACGATTGTAAACGAACCGAAGCGGGGCGGAGAGAAGACCCGCGACACGAGCAGTTGCGTATAGACGCCGTAATCTCCTCCTCGTCCTCAAGCGCCCGCGCCGACACCATGAGTCCATGATCTCCAAGCCCTCATCCGCCACAGTCTCTGCCATCGCTGGACCGCCGCAAAAATCTCGATACGATGCCGGCGGCTTGCCTGCTCCTGCTGGGCTGCATGCAGGCTGCTCCCATCCGCGATATCCCAAACAAAATGTTATGCAAGGGCTCCTGAGCTCCTCTAGAAAAATGTTTTATCCGTTGATATTAGCATTTGGCTTATGGAGAGATAATCGGCAGTTAACATCGCATAGTCTCGTACAGAGCCACAGAGGAATCAAACCACATAATTGCACTGAGTCTGGAATTTATTAAAAATTTCAGCATAACTCCCCTGTATTCACCTACATCCAACAGTCACAAAAATGTTGATCGCAGTAAACATTCGCATGCATATCGTCACATTTTTAAAGTATGGAGAATTTGACACAAAAAAAGAGCTACGACAAACAGCTTCACATCACATAACACTTTACATATACCCATAGGCACAGCTAGCCTCCTAACAAACAACTTGACTTGAATCCTGCCAAATGCAGCTTCAGCGTTCCACTATGAGGCCACATTTTGACGGATTTTGATCCAAACGAGGCTTCAATCGTTGTCAATAAAATGGGATTTTCGATTAGAGTTGATTTTATGATCCTCAGTGCCTGCATGACAGAAGAACGACAAACGCAATAAAATGTGTGCAAAGGAAGTGCAAAGACAGTTATAAAGCTGACAAATTCTTGGGCATGATCTTACCAACTCCTTTTCAGTCCTTGTAAGTTGAGTACGAACTACCATATTTCTTTCATGCAAAGCTCTATCAGCACACAGTGATATGTAAAGATGAAGATAAACAAGATTTTTAACATCTAGAGTTCTTGCTAAATAAACTAAGCTTCAGTTGTCTCTAATTTTTAAGATATATCCGTATACATTCAATTATAATTCAACCCTGTCTCAGGTCGCGGTCTTGGGATAAGTTCACTAACCTTGGCCGGATGAAGCTGGACTCGCAGCTCATGCTGACATTGGCTTCGTTCCAGATGGGTTGAGAGTGGATCAGAGAGGAGGAGGAAGCATCAGCGCCATCGGGAGCATACCAGGGAGGGCGGTCGGCCGAAGTCGCTGCCGTCGCCCAACAGCCGCCTTCTCTGTACTAGTGCCGGGGAGGAGAGAGGATGCTGGGAAGTAGTCGCGCAGGCGTCCCAACATATCAGCCCACGTCCTCCGATGTCGCCGCCGCGTCACCGTGGCCGCCTCTTCTTCATCGTGCTCGTAGCCAGCCTGCCCACGAGCTCAAGGAGATCTTCCCGTTCCCGTCGCCGCCCTGAGCTATATCTGGCGCCCCGAAGTCGGAGGCGGCCGGATCTGGCCTGGAAGCCGGAAAGGGAAGTTGAGTTGGGATGGGGTAGGGTGGTGACGGCAGGTTGCTGCGAGGGAGGCGGAGGTGTCTGCCGATCTGGCCGGCGAGATTGGTCGCGCCGCCGCCATGGAGGACGTGCCGGAGGGGGATCGGGAGGAGCGGCGTTGGGAGGAGCCTGCGGTACAGGAGTCAGGGAATACTCCTGAGACAACTGAATGCTTCTTCAAGCCAATGTGCCTTACCACACCGGCCACTCTTGTTGACATCTCCTGCTAGCGAGCCTTCGTGTTGTCCTAAGCAACGTTAGCTCGATCACTTTGTTAGCGATTGAGCATGTTTAATTACTTAATTATATGCTATCACTGTATAATTTTTGCCTTTGAAGTGCCCACGCATGCGTTAGCTTTTTCTTTATCTGGTCCGGCTGCCTCTAAAACAGATATATAGCTTGTTGTTGGATCAATCAATTTGTTGTTATATATAGGTATGTCGATTCATTTTAATAGCGCTGTACATCGTATCAACGTAATATGGTTCTAGATAAATTATACTTATATATTTCAATAATCCAGCCAATTGTGTCAATTACAAAGACAGGACAAACAATATGGATAGATACAATACGTTCTTGCATCAACCAGGCAAACAAAACGATACAAACCAAGTATATATCCGGACACTAGATAAGTTCTTATACATACGAAGAAACATCCACAATCTAAAAAAGCTCACTTAAATATATAAGCTAGTTGCACTGTGCTTCTTGAAACTTTTCTTGGCACTCAACTACTTGTGTTGAACTTCCTGAAAACGTAAATCAAACGAAAATGTTAGTTTTACCAAGATAAAGTAAGGCAGCTAGCTGATTCTCACAGAGTTACACTGTTTGTTCTGTTGAGTCACTAGCTTGGCCTCCGCCATCTTCTGTGTGGGCACTCCTATATATCTCCATGCTCTATACTGCAACCTTTTTCTGAGTATACCCAATAGTCAAATACTTCATTGTATTGATATTTTGGAGAACTTGACGTTTAAATACAAAAAACTGAGCGCAAAATGAAGTTGAAGAAATAGGGTAGACTAAAATCATTTCTCGTATTCTCAAATCTTTATACTTTGCGTGCTGACCATGAGGCATCCATATAACAAATCACTGAGATAATTAGTAGTCATGCACCTCTGGTAGTTTGTATTTTCATAAACGCTTTCCTGTGCTAGACATTTCACAAAAGTTAGTAACATTACTATTAGATTCATCTTCCATGTTGTACATATGAAAAGGAAGTATATAGCATAAGAGTCGAGTAATTATAAAACTGAATATATCATCAGTTCCATTTATGCATGGAAGTAGTATCGACTGTATGGACTGCTGTTGTAGGACTAGCACATATATAAGGACTTTGAAAGACACTAGGAACTAGATCCAATCAAACATTTTAGTAATGTGATGGTCAGGTTAATATATATATACTCAATACAAAAGGCATGAATTAATGAACCTTCGGGAACACCTTAGGTCTGAATCCCTCATGTTCCTCTGCAGCTAGAAATGGGATGTGTTTCATGTGATAATCCTGATATCAAAATTCAGTATGATAGAGCTTATTTCTGTGCTCTACAGAAATTAGTGACCAGCATATTGGAGATCAGTCCATCAACAAACGAATATCAGAAGGCAGGAAAAATGCATGATGTCACCTGCATCTTGGCAAAGAGTACTATGAACAGGATGTCAGGATTAACTTCAATAAGTGAGATTAAGGTGCACTTGGAAAGGATTTTATGCCTTTTCAGATCTCAACGGAACCATGGCACCACAAACAACAATAGTAAATCTATCAGGATGAAACAATCTTATTGCTGAAACAATCGACCACATAAAAAACCTGACTAGGGTCCGTATAGAGGACGTCGCTGTCGAGCGGTCACTGGTGGCGGCGGCCTCCGGCGCAAGGAGGCAAATGACAGCGGTGCGCCGCCTGCGGTGACGCGCAGCAACTATCTGGGGTGGAAGCGGACGGCGGAGGCGATGAGAGCAGGTTCCGCCACTGGATTGGAGGAGGAGGGCAGCGGCAGCGGACGGGAGGTGCCGCGCCGCCGCCGAGAGGGTCGAGACGAGATGGATTCTCTTCTCGATTTATTTTCGATTTATTTTCCCCTTTTTGATTTTCTTCAAATGATAACGACCGAATGTTGAACGAGGCTAACAGGATGCTGGACGTCGTTCAATACAGCATCTAGGTCTGGACATTATTACGAAGAGCGTCCATTCCTGGACGCTATAGCGCTTAGCGTCCATCCTACAATTCAAATTTCCCTCTATCATTTACTAGATATTTAATTAATAGGTTGTTAATTATTATATATAAAAAAATGGGCAGGGAATACGGACCATGCGAAATCCCAATTTTGCCCTTCCGCTTCTTCAACGCATGCGGATGGGATTTCTGTACCTCGCGGTACCGAGGATCGATAGCCGTTGGATCTACCTATATGGATGGTTCAGATTACATGTACCGGGAGGTACCAAAATAAAAGTTTGGATGGACGGTAAAAAAACTCAAAAGCAAAAGTCCAATCTTTGACTAATCGTTGTTAAGGCTGTGAATGGGATTAGGACTGATGGAATTAAGCATTTTCCTAAACTGTGCTGTTCTAAAACCTGAATTTGTAAGCAGAGCGAGCTGAGTATGTCACCGAGCGATTGCATCATGAATGGTGTTCTTGCGGTAACAGATGAACAAAATTTATTTTTGCCTTCTGTACATGCTACCCAGCCAATCTTTGAATTAAATCTCAAATTACTTGCCTCTTGCTTCCGTATAGCAAGAATCCTCTGTATTTTTGTGCTTATGATGTGATAGATATAACTGCAGAGTCATTTGGTGTTGTATATATGATTTCTGACAAAAATAAAAACTCTCTGTTTGTGTCCTAAATTTGGACCCGTTTATCTCCGGAGTATTCCTAAAGTAAAGAAGGGTAATGGGCCGGTTGATGGTCTTTTTCACGGGAGGACGAATGTTAGACTTTGTGTTTTTTGGTGTAGTGAGAGACGCGGATAAGTCCGACACGGCGTCGGTCGCTCGCCGTTCCAACTCCGACTCCTCCCAGGACCCAGGCAGCCTATATAATTATTCTTGTAGAATCCATTATCCCCTCCCAAATCGTGTGATTTCCATCTGTCGTCCGCAAATCGATCTCTCTCGCAAGCAACTTTGTTGCGGGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGATGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTACGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGAATCGAATATCAAACCCATCATCATCACTGTTTCTCTTATCTTATTATTTATCTTGTAAGAACAATTTGATTTACGGATGCAACAGTTTACCTATGTATGATATCTATTCAC
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| CDS seq | ATGTGGCTGCTGCCACAGGAGGAGGTGGACTGGATCCTTGCCGAATCCAACGAGCCCGTCTCCACCGAGTTCCATGAGCTCAAGCGCGCCAGCCCGTCGCTGGTGCCCTTGCCGGAGGAGGAGAAGGACGAGGGCGGAGGTGGCGGAGGTGTTCAGGCTGTACGACGAAGCACGGGAGGAGCCTGCCCACGAGCTCAAGGAGATCTTCCCGTTCCCGTCGCCGCCCTGAGCTATATCTGGCGCCCCGAAGTCGGAGGCGGCCGGATCTGGCCTGGAAGCCGGAAAGGGAAGTTGAGTTGGGATGGGGTTGCTGCGAGGGAGGCGGAGGTGTCTGCCGATCTGGCCGGCGAGATTGGTCGCGCCGCCGCCATGGAGGACGTGCCGGAGGGGGATCGGGAGGAGCGGCGTTGGGAGGAGCCTGCGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGATGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTACGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGA
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| Protein seq | MWLLPQEEVDWILAESNEPVSTEFHELKRASPSLVPLPEEEKDEGGGGGGVQAVRRSTGGACPRAQGDLPVPVAALSYIWRPEVGGGRIWPGSRKGKLSWDGVAAREAEVSADLAGEIGRAAAMEDVPEGDREERRWEEPAVSVSVSPTKKRKGECSALDGGEDDALAPPAKKKKMWLLPQEEVDWILAQSNEPVPTEFRELKRANPSLVPSPEEEDDESTMLLYACVRNCYEEEAKFAKFQAWVRGEYARKGFVEVDYDYFGERAEVFRLNDEAREEVMGHWDHPSDTDDDDDEDWKLFISAIRRTFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0006240 | OsARC_05g0006240.01 | Chr05 | 5799998 | 5805924 | + | NAM | ||
| CDS seq | ATGTGGCTGCTGCCACAGGAGGAGGTGGACTGGATCCTTGCCGAATCCAACGAGCCCGTCTCCACCGAGTTCCATGAGCTCAAGCGCGCCAGCCCGTCGCTGGTGCCCTTGCCGGAGGAGGAGAAGGACGAGGGCGGAGGTGGCGGAGGTGTTCAGGCTGTACGACGAAGCACGGGAGGAGCCTGCCCACGAGCTCAAGGAGATCTTCCCGTTCCCGTCGCCGCCCTGAGCTATATCTGGCGCCCCGAAGTCGGAGGCGGCCGGATCTGGCCTGGAAGCCGGAAAGGGAAGTTGAGTTGGGATGGGGTTGCTGCGAGGGAGGCGGAGGTGTCTGCCGATCTGGCCGGCGAGATTGGTCGCGCCGCCGCCATGGAGGACGTGCCGGAGGGGGATCGGGAGGAGCGGCGTTGGGAGGAGCCTGCGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGATGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTACGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGA
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| Protein seq | MWLLPQEEVDWILAESNEPVSTEFHELKRASPSLVPLPEEEKDEGGGGGGVQAVRRSTGGACPRAQGDLPVPVAALSYIWRPEVGGGRIWPGSRKGKLSWDGVAAREAEVSADLAGEIGRAAAMEDVPEGDREERRWEEPAVSVSVSPTKKRKGECSALDGGEDDALAPPAKKKKMWLLPQEEVDWILAQSNEPVPTEFRELKRANPSLVPSPEEEDDESTMLLYACVRNCYEEEAKFAKFQAWVRGEYARKGFVEVDYDYFGERAEVFRLNDEAREEVMGHWDHPSDTDDDDDEDWKLFISAIRRTFV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0006240 | OsARC_05g0006240.02 | Chr05 | 5805266 | 5806035 | + | IsoSeq | ||
| CDS seq | ATGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTACGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCA |
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| Protein seq | MTSPPCFFTRASATATRRRPSSPSSRLGFAASTLGKDSWRWTTTTSARGRRCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.057454 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0193700 | RBH | 0.0 | 0.000000 | 0.959714 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g10560 | RBH | 0.0 | 0.000000 | 0.247049 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0193700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006280 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006170 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006220 | RBH | 0.0 | 0.067709 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0086800 | RBH | 0 | 0.0704605 | 0.0214125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0086100 | RBH | 0.06835 | 0.159436 | 0.067444 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006290 | RBH | 0.0 | 0.0 | 0.0 |
