Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0025240 | OGI:03035980 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:24704906-24706268 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGGCATTTCTAATAATAGCAAGCCTTATTCCTATTTTAGCATTTTGGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGGTATAGAACCCATGGGGGGGGGCTTGGTTACAATTCCGAATACGCTATTACATGTTTGCGCTAGTTTTTGTTGTTTTTGATGTGGAAACGGTCTTTCTCTACCCTTGGGCAATGAGTTTCGACGTATTGGGTATATCCGTTATTGGAGGGCCTAGTATATGGCGATTTCTCTTTTGCTAGGCCCAGTGCTAAAAAACCAACTTTCTTACGATTACGAGGTTTATTCGAGGATGAAATTTCATCCTGTAACCATAGCATTTCCCCCTTTTTTTCTACCCCAGGCTTTACAACATTTCGAAATCGGGAAATTGCGACAGGAGCAGGTGCTATTAGAGAACAATTAGCAGATTTGGATTTGCGAATTATTTTAGAGAATTCCTCGGTCGAATGGAAGGAATTATTTTAGATACTTCTCTTCAACTCCGAACTATTGTGATACAAATAATACAAATAGTTGAAGTTAATTTTACGAAAGAAAAGAAGGCGGATTATGGGAGTGTGCGACTTGAATTATTGATTTGGCCATGCAGATAGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATGAATACGGTCCCTGGGTTCCCTTTATTGGAACTATGTTCCTTTTTATTTTTGTTTCGAACTGGTCGGGTGCTCTTTTACCTTGGAAAATTATACAGTTACCCCATGGAGAATTAGCAGCGCCCACGAATGATATAAATACTACTGTTGCTTTAGCTTTACTCACGTCAGCGGCATATTTTTATGCGGGTCTTAGCAAAAAAGGATTGAGTTATTTCGAGAAATATATTAAACCAACTCCAATCCTTTTACCAATTAACATATTAGAAGATTTCACAAAACCATTATCGCTTAGTTTTCGACTTTTCGGGAATATATTGGCGGATGAATTAGTCGTTGTTGTTCTTGTTTCTTTAGTCCCCTTAGTAGTTCCTATACCGGTCATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCGGGGTATTCAGGAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAGATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGGGGTTCTCTATTGGATCTGACTAAATCCGGGTATTGTGGACATTCCCTCATTTCCATTCCGGAGCATCTTAATCTTAAGTTTCCTGTTTATCGAAGAAAAATTCCATTATCAGCTCACTCTTCATCAAAGAACTGA
More
|
||||||||||
| CDS seq | ATGAATCGGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATGAATACGGTCCCTGGGTTCCCTTTATTGGAACTATGTTCCTTTTTATTTTTGTTTCGAACTGGTCGGGTGCTCTTTTACCTTGGAAAATTATACAGTTACCCCATGGAGAATTAGCAGCGCCCACGAATGATATAAATACTACTGTTGCTTTAGCTTTACTCACGTCAGCGGCATATTTTTATGCGGGTCTTAGCAAAAAAGGATTGAGTTATTTCGAGAAATATATTAAACCAACTCCAATCCTTTTACCAATTAACATATTAGAAGATTTCACAAAACCATTATCGCTTAGTTTTCGACTTTTCGGGAATATATTGGCGGATGAATTAGTCGTTGTTGTTCTTGTTTCTTTAGTCCCCTTAGTAGTTCCTATACCGGTCATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCGGGGTATTCAGGAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAGATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGGGGTTCTCTATTGGATCTGACTAAATCCGGGTATTGTGGACATTCCCTCATTTCCATTCCGGAGCATCTTAATCTTAAGTTTCCTGTTTATCGAAGAAAAATTCCATTATCAGCTCACTCTTCATCAAAGAACTGA
More
|
||||||||||
| Protein seq | MNRRVGSATLEFTTKGVSISNEYGPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSAAYFYAGLSKKGLSYFEKYIKPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLLDLTKSGYCGHSLISIPEHLNLKFPVYRRKIPLSAHSSSKN |
||||||||||
| Function | ATP synthase subunit a, chloroplastic [UniProtKB/Swiss-Prot:P0C2Y7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0025240 | OsARC_02g0025240.01 | Chr02 | 24704906 | 24706268 | + | NAM | ||
| CDS seq | ATGAATCGGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATGAATACGGTCCCTGGGTTCCCTTTATTGGAACTATGTTCCTTTTTATTTTTGTTTCGAACTGGTCGGGTGCTCTTTTACCTTGGAAAATTATACAGTTACCCCATGGAGAATTAGCAGCGCCCACGAATGATATAAATACTACTGTTGCTTTAGCTTTACTCACGTCAGCGGCATATTTTTATGCGGGTCTTAGCAAAAAAGGATTGAGTTATTTCGAGAAATATATTAAACCAACTCCAATCCTTTTACCAATTAACATATTAGAAGATTTCACAAAACCATTATCGCTTAGTTTTCGACTTTTCGGGAATATATTGGCGGATGAATTAGTCGTTGTTGTTCTTGTTTCTTTAGTCCCCTTAGTAGTTCCTATACCGGTCATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCGGGGTATTCAGGAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAGATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGGGGTTCTCTATTGGATCTGACTAAATCCGGGTATTGTGGACATTCCCTCATTTCCATTCCGGAGCATCTTAATCTTAAGTTTCCTGTTTATCGAAGAAAAATTCCATTATCAGCTCACTCTTCATCAAAGAACTGA
More
|
|||||||
| Protein seq | MNRRVGSATLEFTTKGVSISNEYGPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSAAYFYAGLSKKGLSYFEKYIKPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLLDLTKSGYCGHSLISIPEHLNLKFPVYRRKIPLSAHSSSKN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 38.531681 | 0.699404 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007620 | SBH | 20.336414 | 108.285255 | 143.592072 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015560 | SBH | 7.807839 | 33.657520 | 37.146278 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025340 | RBH | 569.773132 | 16.176212 | 333.529907 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017770 | SBH | 6.429429 | 89.839859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024980 | RBH | 5.954488 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
