Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0024480 | OGI:02068680 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:23943159-23944928 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATACCCTTCCTTTTGTTTGTATAAACTTAATTTTATATTGTACACAAGCATATCGATAAATTACACCGTTATAACGACTCACCGCGATCAAACAGTGCACATCTATCTCTTTTTCTCTAATTAATGTGTAATTTCTAAACTCCAATTTTGCCATTTGGATGACACGTGAACTTTTTACTCCTACCGATAACAGAAGTTACAACGTGTTGCTCTGCCAGTTTCTCTGTCAGTAGTGTTCGGTAATCATCATTGTCACTCCTCTCTTGTTACAGAGACCAATCCCAATGATGGTCAGGTCAGATGATCGGCGGCGGCGACGTCTCCCAGACGTCGACGACATTCTCCTCGTTGTGCAGGGCGAAGAGGCGGTCGCCGCCGATCGAGAAGTCGCAGATGGCGCCGGCGTCGCTGCCCCGCAGCGTCGACGTCAGCACGTGGTCGGGGCCACTGAACACCGAGATGGTGTCGTTGGTCGACGCGAAGAGCTGGCCGCCGTGCGCGGCGAGCTTCGGGTAGCACGTCTCCTCGCCGCGCGGCGCCGCCTTCTTCTTCCTGGCGGCGAGCTTGCTCCGCGACCTCCACCGCACGCCGCCGGCGCCGCCGCTGCTCCGGACGTCGAGGAACCCGAGGTCGTCGTACTGGTTGATCACGCAGAGCGACCGGCCGTCCTCCATCGCGATGGCGTGCAGCACGTGCTTGTCCTCCAGCGACGCCGGCGTGCCGACGTCGGACCACGACCAGGCGACGTTCTTCTTGTCCCGGAAGTCCAGCAGGCTGATGAAGGAGGAGTCCGTCCGCGGGAACATGGTCGCCGCCATGAGCGTGCTCGTGCCGTCGAGCCACTGGAGCTTGTCGGCGTCGCCGAGCGCGCAGCCCGGCGGCTCGTAGAAGAAGTCGGCCTGCTCGCCGGTGGTGCAGTCCCAGACGCCGATGCCGTACTCGTTGAACCGGCCCTTGCAGCTCGCGAAGACCTTGCACCGGCTGTCGAAGGCGAGCGCCCCGGGGGTGTAGGACCTGACGTGGCGATCGTGCGCGACGCGGAAGCGGTGGCGCAGGTCGCCGGTGAGCGCGGAGAAGGCCGCCACGCCGCCGTCGCGCCTGACGGTGCCGGGCCTCTCCCGCGCGGCGACGAGGAGCGTGGCCTCGTCGAGGTAGGCCGCGTCGTTGACCGGCGCGTGGTCGAGGTGCACGGCCCGGCGCTCCTCCATCACCCAGTTGTACACGCGCACGGCGCCGCCGTGCGCGACGCAGCAGCCGCCGTCGGGCGCGGCGCGGACGGCCGTCCCGTCGCCCGCGGCGCTCCCGGCCACGGACGCCGCCAGCCGCAGCCGGTCCCCGTCGAACGGCCCCCACCGCGCGGCGCGGACGCGGTCGAGGAGGCCGTAGTAGAGCGCCTCGCGGCAGAGCACCCCGTCGGCGACGTGGGGCGGCACGTGGAGCCCCCCCGTGCGGAGCAGGTCGAGCAGCACCGCGAAGCACTCCGGGTCACGGTCGATGAAGTACTCGTCCGCGCCACCCTCGCCGTCGCCGTCCCCGCCGCCGCCGTGGTTCCAGGAGGCGTCGATCATGGCGCCGAGCATGGTGTCCCGGCCGGCGCTGGCGAGCGTGGAGGCCGTCGTCTCGAACACCCGGCCTCCGACGTTGAGCCGCACGCGGCCCCGCTTCCCCTTCATGGCCTCGCACTCGCGGGGAGGTGGAGAGCGAGTGGCGCGCGCGACGGTTTGGTTTGGTTGGGGTTGGGGTTGGGCCACGCCCTCGCGTCGCGCGGC
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| CDS seq | ATGAAGGGGAAGCGGGGCCGCGTGCGGCTCAACGTCGGAGGCCGGGTGTTCGAGACGACGGCCTCCACGCTCGCCAGCGCCGGCCGGGACACCATGCTCGGCGCCATGATCGACGCCTCCTGGAACCACGGCGGCGGCGGGGACGGCGACGGCGAGGGTGGCGCGGACGAGTACTTCATCGACCGTGACCCGGAGTGCTTCGCGGTGCTGCTCGACCTGCTCCGCACGGGGGGGCTCCACGTGCCGCCCCACGTCGCCGACGGGGTGCTCTGCCGCGAGGCGCTCTACTACGGCCTCCTCGACCGCGTCCGCGCCGCGCGGTGGGGGCCGTTCGACGGGGACCGGCTGCGGCTGGCGGCGTCCGTGGCCGGGAGCGCCGCGGGCGACGGGACGGCCGTCCGCGCCGCGCCCGACGGCGGCTGCTGCGTCGCGCACGGCGGCGCCGTGCGCGTGTACAACTGGGTGATGGAGGAGCGCCGGGCCGTGCACCTCGACCACGCGCCGGTCAACGACGCGGCCTACCTCGACGAGGCCACGCTCCTCGTCGCCGCGCGGGAGAGGCCCGGCACCGTCAGGCGCGACGGCGGCGTGGCGGCCTTCTCCGCGCTCACCGGCGACCTGCGCCACCGCTTCCGCGTCGCGCACGATCGCCACGTCAGGTCCTACACCCCCGGGGCGCTCGCCTTCGACAGCCGGTGCAAGGTCTTCGCGAGCTGCAAGGGCCGGTTCAACGAGTACGGCATCGGCGTCTGGGACTGCACCACCGGCGAGCAGGCCGACTTCTTCTACGAGCCGCCGGGCTGCGCGCTCGGCGACGCCGACAAGCTCCAGTGGCTCGACGGCACGAGCACGCTCATGGCGGCGACCATGTTCCCGCGGACGGACTCCTCCTTCATCAGCCTGCTGGACTTCCGGGACAAGAAGAACGTCGCCTGGTCGTGGTCCGACGTCGGCACGCCGGCGTCGCTGGAGGACAAGCACGTGCTGCACGCCATCGCGATGGAGGACGGCCGGTCGCTCTGCGTGATCAACCAGTACGACGACCTCGGGTTCCTCGACGTCCGGAGCAGCGGCGGCGCCGGCGGCGTGCGGTGGAGGTCGCGGAGCAAGCTCGCCGCCAGGAAGAAGAAGGCGGCGCCGCGCGGCGAGGAGACGTGCTACCCGAAGCTCGCCGCGCACGGCGGCCAGCTCTTCGCGTCGACCAACGACACCATCTCGGTGTTCAGTGGCCCCGACCACGTGCTGACGTCGACGCTGCGGGGCAGCGACGCCGGCGCCATCTGCGACTTCTCGATCGGCGGCGACCGCCTCTTCGCCCTGCACAACGAGGAGAATGTCGTCGACGTCTGGGAGACGTCGCCGCCGCCGATCATCTGA
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| Protein seq | MKGKRGRVRLNVGGRVFETTASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECFAVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAARWGPFDGDRLRLAASVAGSAAGDGTAVRAAPDGGCCVAHGGAVRVYNWVMEERRAVHLDHAPVNDAAYLDEATLLVAARERPGTVRRDGGVAAFSALTGDLRHRFRVAHDRHVRSYTPGALAFDSRCKVFASCKGRFNEYGIGVWDCTTGEQADFFYEPPGCALGDADKLQWLDGTSTLMAATMFPRTDSSFISLLDFRDKKNVAWSWSDVGTPASLEDKHVLHAIAMEDGRSLCVINQYDDLGFLDVRSSGGAGGVRWRSRSKLAARKKKAAPRGEETCYPKLAAHGGQLFASTNDTISVFSGPDHVLTSTLRGSDAGAICDFSIGGDRLFALHNEENVVDVWETSPPPII |
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| Function | BTB/POZ domain-containing protein At2g24240 [UniProtKB/Swiss-Prot:Q9ZUH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0024480 | OsARC_02g0024480.01 | Chr02 | 23943159 | 23944928 | - | NAM | ||
| CDS seq | ATGAAGGGGAAGCGGGGCCGCGTGCGGCTCAACGTCGGAGGCCGGGTGTTCGAGACGACGGCCTCCACGCTCGCCAGCGCCGGCCGGGACACCATGCTCGGCGCCATGATCGACGCCTCCTGGAACCACGGCGGCGGCGGGGACGGCGACGGCGAGGGTGGCGCGGACGAGTACTTCATCGACCGTGACCCGGAGTGCTTCGCGGTGCTGCTCGACCTGCTCCGCACGGGGGGGCTCCACGTGCCGCCCCACGTCGCCGACGGGGTGCTCTGCCGCGAGGCGCTCTACTACGGCCTCCTCGACCGCGTCCGCGCCGCGCGGTGGGGGCCGTTCGACGGGGACCGGCTGCGGCTGGCGGCGTCCGTGGCCGGGAGCGCCGCGGGCGACGGGACGGCCGTCCGCGCCGCGCCCGACGGCGGCTGCTGCGTCGCGCACGGCGGCGCCGTGCGCGTGTACAACTGGGTGATGGAGGAGCGCCGGGCCGTGCACCTCGACCACGCGCCGGTCAACGACGCGGCCTACCTCGACGAGGCCACGCTCCTCGTCGCCGCGCGGGAGAGGCCCGGCACCGTCAGGCGCGACGGCGGCGTGGCGGCCTTCTCCGCGCTCACCGGCGACCTGCGCCACCGCTTCCGCGTCGCGCACGATCGCCACGTCAGGTCCTACACCCCCGGGGCGCTCGCCTTCGACAGCCGGTGCAAGGTCTTCGCGAGCTGCAAGGGCCGGTTCAACGAGTACGGCATCGGCGTCTGGGACTGCACCACCGGCGAGCAGGCCGACTTCTTCTACGAGCCGCCGGGCTGCGCGCTCGGCGACGCCGACAAGCTCCAGTGGCTCGACGGCACGAGCACGCTCATGGCGGCGACCATGTTCCCGCGGACGGACTCCTCCTTCATCAGCCTGCTGGACTTCCGGGACAAGAAGAACGTCGCCTGGTCGTGGTCCGACGTCGGCACGCCGGCGTCGCTGGAGGACAAGCACGTGCTGCACGCCATCGCGATGGAGGACGGCCGGTCGCTCTGCGTGATCAACCAGTACGACGACCTCGGGTTCCTCGACGTCCGGAGCAGCGGCGGCGCCGGCGGCGTGCGGTGGAGGTCGCGGAGCAAGCTCGCCGCCAGGAAGAAGAAGGCGGCGCCGCGCGGCGAGGAGACGTGCTACCCGAAGCTCGCCGCGCACGGCGGCCAGCTCTTCGCGTCGACCAACGACACCATCTCGGTGTTCAGTGGCCCCGACCACGTGCTGACGTCGACGCTGCGGGGCAGCGACGCCGGCGCCATCTGCGACTTCTCGATCGGCGGCGACCGCCTCTTCGCCCTGCACAACGAGGAGAATGTCGTCGACGTCTGGGAGACGTCGCCGCCGCCGATCATCTGA
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| Protein seq | MKGKRGRVRLNVGGRVFETTASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECFAVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAARWGPFDGDRLRLAASVAGSAAGDGTAVRAAPDGGCCVAHGGAVRVYNWVMEERRAVHLDHAPVNDAAYLDEATLLVAARERPGTVRRDGGVAAFSALTGDLRHRFRVAHDRHVRSYTPGALAFDSRCKVFASCKGRFNEYGIGVWDCTTGEQADFFYEPPGCALGDADKLQWLDGTSTLMAATMFPRTDSSFISLLDFRDKKNVAWSWSDVGTPASLEDKHVLHAIAMEDGRSLCVINQYDDLGFLDVRSSGGAGGVRWRSRSKLAARKKKAAPRGEETCYPKLAAHGGQLFASTNDTISVFSGPDHVLTSTLRGSDAGAICDFSIGGDRLFALHNEENVVDVWETSPPPII
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.029684 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0612700 | RBH | 0.039305 | 0.024640 | 0.407241 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39910 | RBH | 0.026580 | 0.016573 | 0.104832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0612700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024680 | RBH | 0.107270 | 2.963446 | 0.712656 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024830 | RBH | 0.0 | 0.285520 | 0.719397 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024830 | RBH | 0.237801 | 4.752031 | 1.681110 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019090 | RBH | 0.588888 | 0.329843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024370 | RBH | 0.591431 | 0.975454 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0393900 | RBH | 0.3560775 | 7.9665685 | 1.334646 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024200 | RBH | 0.054479 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0422900 | RBH | 0.492856 | 17.6915015 | 0.4687295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024470 | RBH | 0.0 | 0.401475 | 0.259245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024220 | RBH | 0.0 | 1.377485 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024640 | RBH | 0.088528 | 0.502217 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024490 | RBH | 0.0 | 6.685290 | 1.330363 |
