Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0015400 | OGI:04044660 | 8/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:14319330-14322592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACATCGCCTGAACCTAAGCAAAAGAGGTTCAAGAGACAGACCCAAATAAAGAAGAAATAGTAATCTTTGCCGAATAGGAAGAAAAAAGATTCATATTTCGATACAAGAAGAATCGACACAAGAAAATGGCAAAAAAGCCTTTTTCTTGTGCCCAATAGAGGATTAAGAAGACCAGCAATCCCTCCTAAAAGGATTTGTTCCTTTTATTGTTCTCGCCCTTGCCTTGCATTCTCCTCGTTTTGCATGAGATGATAGAAATAAGGAATTGCAGACAAGACATCTCGCAAACAAAAAATAGTCTAAACAAAAAAAAGATTTCCAAAATGGATCATAGAGAATTCTAGCAATCGCCAATAAATCGCGGCTTTTTACCAACTTGATGGTAAGAAATCCCGGGACCTAGAAATTCATTTCGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAACGGATGCGAAGAAGAACAAAAGGCCTTGAACGCGTAATGGATCCTGAAGCACTATTTCTGCATCCCCCTGACCAAACCCTCCCACATTAGGATTACTTGTTAATGGTTGATCAAGCTTGATCGATTCCCCCTCTGAAACAAGAAGTTCTGGACCGGGAGGTATAAGATCAATCACTTGGCGTCCATCCGATGCATCGACTATGGATATTTCATATCCCCCCTTTTCTTTACGCAGTATTTTTCTTACTACAACTGTTGACGTTGCATTATAGACCGTATTGTTACTCTTGCTACCATCAGGGTAGATCTGTCCCCTTCCTCGGTTTCCCCCCACATATATGGGATATTTTAAGAAATGAACGTCTTTCTTCATAGCAGGGTCGGGGGAAAGAATGGGAAAGACGATTTCACTATATTTCTTACCGGGAACAGGGCCTATCACAAGAATATTTTTTTTATTGGGACGATAACTCTGAAAAGAGAGATTTCCTATCTTTTCTTTCAACTCAGGAGAAATACGGTCGGGCGGCGCTAATTCGAATCCCTCGGGCAAAATAAGAACAGCACCCACATTCAACCCTCCCTTTTTCCCATTAGCAAGAACTTGTTTCAGTTGCATATCATAAGGAATTCGAAGAACTGCTTCAAATACAGTATCGGGAAGCACTGCTTGGGGAACTTCAATATCCACAGGCTTATTCGCTAAATGGCAATTGGCACATACAATTCGTCCAGTTGCTTCTCGTGGGTTTTCATAACCTTGCTGCGCAAAAATGGGACATGCATTTGAAATAGATGTCCGAGTTATTACGTATATCATGATCGATACAGAAATCGATCGAGTCATCTGTTCCTTTACCCAAGAAAAAGTATTTCTATTTTCCATGTCCAATCACAGATCCCGGAATTTCTACAATAAATTAGATAGGTAGCTAAGCTAATCTAGTTCCCTATACATGAATCTGTTGTCATTCTACTGCAACAGTTGTACTGGAATGATGAATACCTTGAGCAGGTAGAAATAGAAAAAAAGAATTTTGCTAAAATGGAAAAAGGCTTTCTTTCTAAAGGAAAAAGGATGCTAATTTTGATTAATATCAGGAGATCAAATGAGTTTATGCTTCACTAATTGAATGATAAATGACTACAAGCGAAGGAGATAGGCGGTTTAAACAAAAAAAGACCCAAAATTTCAAACATGTATCTAGAATCACAGGAAAACAACAAACAAAAATAGTGAAAATTAGCTCGTTAGGAACCCATCCAAGATCGTTATAGACCCAACGAATTAGTAGTTCCCAACCGCAGGTGGAGTGAAATCCAACAAAAAAATCAGTAACTAAAAGAATAAAAAAAGCTTTTACTGAGTCATTTAAGTTATAGAAGAATTCCTGAACCCAAGAATTCAAAATAACAAGTTCCTCTTTACCCAGAAAAAAAGAACCACTTAGAATAGCCAAACAGATTATATTTGTCGAGAAATGCAAAATGATATGGAGATGACCCTCATTATCTATTTTGGCCAATTGTATTATTTCCTTGCGTATTCCTATAGGGGGGTTTTGTACATGTGTATTCGGTTTCTCTTTTATCATTTCGTCCAAGATAAAAAGGTCTTCTAATTCCATGAATCTTTCTAGAACTCTTTTCTCTTGAATAGCAGTTAAGAGAGTTTGGGATTGCCTGGTATTCCACCAATTCTTAATCCAAAGTTCCAGACATTTGTTAAAAGAGAAAGAGACTCCCCAAGGCAAAAGTACGATAAATACAAGATATAGGAAAGAAGGCAATGCTTTCTTTTTTTTCATTTTTGATCTGTAAATTGAGTTGTTAATGAATCCGCTTTATTCGCTGACTCTATATGATATTTCTTTTTCTTTGAAGGAAAAAATCTATAACAAGGTTTGAGACCTTGTATCTATTCCTCTTTTTTCTATACTAGTAGAATTTCATTGCATTGAGTTCTTTCTTAGATCTAGATGGAGTGGAATAGAGAAATAGAAAAAAGTCCTTTCGGATGAAAATGGAAGAATATTACGCCATATATCCCACTTGGACAAATTAGAAGCAATTTTCTCTTATCCTCATTTGTTCCTTCCTTTAGATAAATACTCAAAATCCCCTTACAATAATGCAATTTCGAAGGGACCTTTTCCCTCGTGTTGAGAAAACTTTTCTTCTTCCAATTCTTCTTCATTCAATTCATTTCAAAAAATTCAATTGGTACTCAAAATACTTCCATTGGTATGCGCAAGAAATAAGCCAATTCGGCAGCTTTTTGTTCAATTTCTCGTGGAGTAAAAAACTTCTCATCAGTACGAGTCAAGGGAATGGCCCCCTGGCCCCAGATTTCCATATAAAGGATACGACGAGGAAAAAGACCTTCTTTAACCTGAATTCTAATTGATTGGATATCCCGCATAAGGAATCGAAGGAAGACGCGACGTTTTATTCCAGGGAATCCCCAACGAAAAATGCACACTACTCCCTCTTTTCTATCGAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAGTAAGCGCTAATGAATAGGCCTGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAAAGGAATTTGTTGAGATGGAAGTACAGATATAATATTCTTACCAAGATAACTGGAAGCCCCAACCGCTAAGAATCCTAGTGAACCTAGAAAAAGAATACAGGCCCAGAAAAAATTACCTCTTTTTCGAGAACCTTTTAGAAGTTCTATCCATATGTGTTCTGATCGCCAATTCAT
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| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCTGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAAATTGGTGGAATACCAGGCAATCCCAAACTCTCTTAACTGCTATTCAAGAGAAAAGAGTTCTAGAAAGATTCATGGAATTAGAAGACCTTTTTATCTTGGACGAAATGATAAAAGAGAAACCGAATACACATGTACAAAACCCCCCTATAGGAATACGCAAGGAAATAATACAATTGGCCAAAATAGATAATGAGGTTACTGATTTTTTTGTTGGATTTCACTCCACCTGCGGTTGGGAACTACTAATTCGTTGGGTCTATAACGATCTTGGATGGGTTCCTAACGAGCTAATTTTCACTATTTTTCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAAATATTCTTGTGATAGGCCCTGTTCCCGGTAAGAAATATAGTGAAATCGTCTTTCCCATTCTTTCCCCCGACCCTGCTATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGATCTACCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAACAGTTGTAGCGATGTAG
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| Protein seq | MNWRSEHIWIELLKGSRKRGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIWGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMENWWNTRQSQTLLTAIQEKRVLERFMELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTCGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTVVAM |
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| Function | Cytochrome f [UniProtKB/Swiss-Prot:P0C389] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0015400 | OsARC_02g0015400.01 | Chr02 | 14319330 | 14322592 | - | NAM | ||
| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCTGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAAATTGGTGGAATACCAGGCAATCCCAAACTCTCTTAACTGCTATTCAAGAGAAAAGAGTTCTAGAAAGATTCATGGAATTAGAAGACCTTTTTATCTTGGACGAAATGATAAAAGAGAAACCGAATACACATGTACAAAACCCCCCTATAGGAATACGCAAGGAAATAATACAATTGGCCAAAATAGATAATGAGGTTACTGATTTTTTTGTTGGATTTCACTCCACCTGCGGTTGGGAACTACTAATTCGTTGGGTCTATAACGATCTTGGATGGGTTCCTAACGAGCTAATTTTCACTATTTTTCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAAATATTCTTGTGATAGGCCCTGTTCCCGGTAAGAAATATAGTGAAATCGTCTTTCCCATTCTTTCCCCCGACCCTGCTATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGATCTACCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAACAGTTGTAGCGATGTAG
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| Protein seq | MNWRSEHIWIELLKGSRKRGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIWGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMENWWNTRQSQTLLTAIQEKRVLERFMELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTCGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTVVAM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0015400 | OsARC_02g0015400.02 | Chr02 | 14320268 | 14322224 | - | IsoSeq | ||
| CDS seq | ATGAAAAAAAAGAAAGCATTGCCTTCTTTCCTATATCTTGTATTTATCGTACTTTTGCCTTGGGGAGTCTCTTTCTCTTTTAACAAATGTCTGGAACTTTGGATTAAGAATTGGTGGAATACCAGGCAATCCCAAACTCTCTTAACTGCTATTCAAGAGAAAAGAGTTCTAGAAAGATTCATGGAATTAGAAGACCTTTTTATCTTGGACGAAATGATAAAAGAGAAACCGAATACACATGTACAAAACCCCCCTATAGGAATACGCAAGGAAATAATACAATTGGCCAAAATAGATAATGAGGGTCATCTCCATATCATTTTGCATTTCTCGACAAATATAATCTGTTTGGCTATTCTAAGTGGTTCTTTTTTTCTGGGTAAAGAGGAACTTGTTATTTTGAATTCTTGGGTTCAGGAATTCTTCTATAACTTAAATGACTCAGTAAAAGCTTTTTTTATTCTTTTAGTTACTGATTTTTTTGTTGGATTTCACTCCACCTGCGGTTGGGAACTACTAATTCGTTGGGTCTATAACGATCTTGGATGGGTTCCTAACGAGCTAATTTTCACTATTTTTGTTTGTTGTTTTCCTGTGATTCTAGATACATGTTTGAAATTTTGGGTCTTTTTTTGTTTAAACCGCCTATCTCCTTCGCTTGTAGTCATTTATCATTCAATTAGTGAA
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| Protein seq | MKKKKALPSFLYLVFIVLLPWGVSFSFNKCLELWIKNWWNTRQSQTLLTAIQEKRVLERFMELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEGHLHIILHFSTNIICLAILSGSFFLGKEELVILNSWVQEFFYNLNDSVKAFFILLVTDFFVGFHSTCGWELLIRWVYNDLGWVPNELIFTIFVCCFPVILDTCLKFWVFFCLNRLSPSLVVIYHSISE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 28.082493 | 0.732079 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g24604 | RBH | 55.268616 | 48.546970 | 10.743213 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015510 | SBH | 87.976479 | 35.859432 | 142.920792 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015650 | RBH | 10.978106 | 19.987053 | 14.325867 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015550 | SBH | 33.013920 | 0.475163 | 49.047176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035790 | RBH | 159.215408 | 2.618303 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020190 | SBH | 1915.102539 | 132.159256 | 1512.630249 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | SBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020140 | SBH | 126.792618 | 4.171010 | 60.184303 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020150 | SBH | 44.064213 | 0.873456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020060 | SBH | 148.625443 | 36.743984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019650 | SBH | 418.873779 | 0.0 | 134.429916 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021050 | SBH | 98.717003 | 13.849771 | 124.464493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020780 | SBH | 479.683258 | 191.294098 | 783.891907 |
