Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0041920 | OGI:01113490 | 6/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:38679688-38681592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACACCTGTTGACGTTGCATTATAGACCGTATTGTTACTCTTGCTACCATCAGGATAGATCTGTCCCCTTCCTCGGTTTCCCCCCACATATATGGGATATTTTAAGAAATGAACGTCTTTCTTCATAGCAGGGTCGGGGGAAAGAATGGGAAAGACGATTTCACTATATTTCTTACCGGGAACAGGGCCTATCACAAGAATATTTTTTTTATTGGGACGATAACTCTGAAAAGAGAGATTTCCTATCTTTTCTTTCAACTCAGGAGAAATACGGTCGGGCGGCGCTAATTCGAATCCCTCGGGCAAAATAAGAACAGCACCCACATTCAACCCTCCCTTTTTCCCATTAGCAAGAACTTGTTTCAGTTGCATATCATAAGGAATTCGAAGAACTGCTTCAAATACAGTATCGGGAAGCACTGCTTGGGGAACTTCAATATCCACAGGCTTATTCGCTAAATGGCAATTGGCACATACAATTCGTCCAGTTGCTTCTCGTGGGTTTTCATAACCTTGCTGCGCAAAAATGGGATATGCATTTGAAATAGATGTCCGAGTTATTACGTATATCATGATCGATACAGAAATCGATCGAGTCATCTGTTCCTTTACCCAAGAAAAAGTATTTCTATTTTCCATGTCCAATCACAGATCCCGGAATTTCTACAATAAATTAGATAGGTAGCTAAGCTAATCTAGTTCCCTATACACGAATCTGTTGTCATTCTACTGCAACAGTTGTACTGGAATGATGAATACCTTGAGCAGGTAGAAATAGAAAAAAAGAATTTTGCTAAAATGGAAAAAGGCTTTCTTTCTAAAGGAAAAAGGATGCTAATTTTGATTAATATCAGGAGATCAAATGAGTTTATGCTTCACTAATTGAATGATAAATGACTACAAGCGAAGGAGATAGGCGGTTTAAACAAAAAAAGACCCAAAATTTCAAACATGTATCTAGAATCACAGGAAAACTACAAACAAAAATAGTGAAAATTAGCTCGTTAGGAACCCATCCAAGATCGTTATAGACCCAACGAATTAGTAGTTCCCAACCGCGGGTGGAGTGAAATCCAACAAAAAAATCAGTAACTAAAAGAATAAAAAAAGCTTTTACTGAGTCATTTAAGTTATAGAAGAATTCCTGAACCCAAGAATTCAAAATAACAAGTTCCTCTTTACCCAGAAAAAAAGAACCACTTAGAATAGCCAAACAGATTATATTTGTCGAGAAATGCAAAATGATATGGAGATGACCCTCATTATCTATTTTGGCCAATTGTATTATTTCCTTGCGTATTTGTGGATCCCACTGACATGTGGGCCCCACATGCCATCTTATCCGTTTCTTCTTCCTCCCCTCCCCCCTTCTCTATTCTCTCCCTCTCCCCTACAGCCGTTCGCGGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGGCGGCGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGCGCGACGGAGACGCGGGTGTGGCGGCGGCGACCTGCAGGTCGAGCAGGGCGCGGCCGAGCTCGCCGTACCCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTGGTCTCCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAGCTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTTCTCGCAGCAGATATACCCCAT
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| CDS seq | ATGGGGTATATCTGCTGCGAGAAGGAGGAGCAGCGCGAGCGCGTCGAGGCGGTCGGAGCGGACGGTGTAGCTGATCGCCTGCGGGCGGCGGCGGTGCCCGGGCTGAGCTCCACCACGGCGAAGATGGAGGAGACCACAGCGGCGGCGGCGGGAGGCACACGCGGCGGGGTACGGCGAGCTCGGCCGCGCCCTGCTCGACCTGCAGGTCGCCGCCGCCACACCCGCGTCTCCGTCGCGCCGCTCGCAGGCCGCCGCTCCACACCTGCGCCTCCGCCGCTCGGGACTCCGTGCAGCCGCCGCCGCTCGCCGCATTTTCCTGTGATTCTAGATACATGTTTGAAATTTTGGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAAATATTCTTGTGATAGGCCCTGTTCCCGGTAAGAAATATAGTGAAATCGTCTTTCCCATTCTTTCCCCCGACCCTGCTATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGATCTATCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAACAGGTGTA
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| Protein seq | MGYICCEKEEQRERVEAVGADGVADRLRAAAVPGLSSTTAKMEETTAAAAGGTRGGVRRARPRPARPAGRRRHTRVSVAPLAGRRSTPAPPPLGTPCSRRRSPHFPVILDTCLKFWQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTGV |
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| Function | Cytochrome f [UniProtKB/Swiss-Prot:P0C389] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041920 | OsARC_01g0041920.01 | Chr01 | 38679688 | 38681592 | - | NAM | ||
| CDS seq | ATGGGGTATATCTGCTGCGAGAAGGAGGAGCAGCGCGAGCGCGTCGAGGCGGTCGGAGCGGACGGTGTAGCTGATCGCCTGCGGGCGGCGGCGGTGCCCGGGCTGAGCTCCACCACGGCGAAGATGGAGGAGACCACAGCGGCGGCGGCGGGAGGCACACGCGGCGGGGTACGGCGAGCTCGGCCGCGCCCTGCTCGACCTGCAGGTCGCCGCCGCCACACCCGCGTCTCCGTCGCGCCGCTCGCAGGCCGCCGCTCCACACCTGCGCCTCCGCCGCTCGGGACTCCGTGCAGCCGCCGCCGCTCGCCGCATTTTCCTGTGATTCTAGATACATGTTTGAAATTTTGGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAAATATTCTTGTGATAGGCCCTGTTCCCGGTAAGAAATATAGTGAAATCGTCTTTCCCATTCTTTCCCCCGACCCTGCTATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGATCTATCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAACAGGTGTA
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| Protein seq | MGYICCEKEEQRERVEAVGADGVADRLRAAAVPGLSSTTAKMEETTAAAAGGTRGGVRRARPRPARPAGRRRHTRVSVAPLAGRRSTPAPPPLGTPCSRRRSPHFPVILDTCLKFWQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKNILVIGPVPGKKYSEIVFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTGV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041920 | OsARC_01g0041920.02 | Chr01 | 38679901 | 38680246 | - | IsoSeq | ||
| CDS seq | CTCGGACATCTATTTCAAATGCATATCCCATTTTTGCGCAGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCC |
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| Protein seq | LGHLFQMHIPFLRSKVMKTHEKQLDELYVPIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 54.244076 | 1.332300 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65902 | RBH | 140.053986 | 127.732231 | 36.181549 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042550 | RBH | 109.800011 | 48.202797 | 168.446732 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042100 | RBH | 205.158737 | 22.960476 | 261.425415 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042440 | RBH | 8.273696 | 0.000000 | 10.959109 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0629800 | RBH | 7.332639 | 10.9481745 | 10.8321115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021310 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
