Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0663100 | OGI:01040660 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:26682547-26684867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGTTCTTCACCGGTAAAGTATGTACTTGTATTGCTGATATTGTCTGTCCCGTAGTCGCCACTACCTTCTGCCCTTCTCCAACGACCTGTTCCCCTTCTACCGCCTGTTCCCCTTGGAGACGAAAATGAAATTCCCCTGTTTCTCATACTGGCTGCTCCCCTGACAGGTGGTGGAGTAGAAAGTGACCTGTGGCTCCAACTGCCTGCTTCATTGACAGCCGAAATTTCATTGTAGCTTATGCTTCCTGCTTCACTGACAGACAAATGACCCAAGTTTTGCTCAGCTGCACTGTAGGAACCTCCTGGACCTGGAGTTTCTGTGTAAACATGACCCCCCTGCCCCATATTTTCACTCGGAAAATCTTCCTTAGATCCCCACAATGCATTTACATCTACGTCGCCATCGAGACAGTCCAAGTTCCAATCAAATGAATTAACCTGTGATAGCCCATTCCCTTTTGGAGAAATATAACAGTGTGCAAACATCAGAACTATTCTTCTAAAACATTAACTAAAAAAAAGTGGTACAGAAATAAAGGTTGCTATACCAAGTTCAGGTGTATTGTTGCACTTGAAAGAATGTTGTTGCTGTGAGCTAAACACTTCTAAGGTACTGTTATCCATGGACGAAACTGGCATATCCACACTTTCTACCGATGGAACGTGTGGATCAATAACAACTTGGATGCCTTCAAGTTGTCCTGAAGAAAGTTTAGAGAAAATCTACCTTTTGAACTGATAAAACACAAGATATGTGCAATAGAAAGAAAAGACCAACTACCATGGTGCATCAAGTTCTTGTCCAAAGTGTCTGGCTGGAATCTATATGGCACACCAATGTCTGATAATCCAACAGATCCATCATAGGTTGATGAAATTTGCGGATGCATTCCTTGCACATCAAGTTGTTCTGTGAGATTTTGAAGAATCAAGAACTAATCAAGAAGCATTTAACAGAAACTAATTCCAGCAGCAAATTATGATGATTGGATATTGGGAGCACTCAAATTACTCAAGAGAGGGCAGGTCGAACCTACCTTGTAGTGTATGGCTTGGTTGCATTGAGAATGATTCCTGAAGGCAATAGCTGTCATTTCTTATAGAAAGAGCCTCATGTTCATGAGACACACTGCTCTCTTTAAGGCAACTAGAGTAAACTCCTGGTCTACATTTCTGAGCATGAGCAATGATCAAATCCCAATCTTGGTCGGAAATCTTCCCCAAAATCTACATAGGGTGATATTAAAAAAACTATCAGTAACATTGCATAGATAATAAATTAGCTAGCAAAATAACAATGTTAATAATCAATCTCATACTTTACGCAGATCATATTCGCTATTATTGTAGAAAGATAAGAAGTCCTCCACTGTCTTGATACCATTCTGCTCTAGTAACTTGTGCCTGTCACCGTTCTTTGCAATTTTACTCAATTTATATACAGCATCACGTGGGGATGGATTGGGATTCTTCTTTGTTACTGCAGATAAAGACATTTGATGTAGTCACCCTGGATTAGGATAGTTTGACTTGGAACAATACTCTTATCTATAAACTTGGTCGAACATAGGATAGTTTTACTTAGGATAAAACCAGAGATACCCCGTGTGAATGCATGGGTTGTGGATTAAGTTGTTCTGTTCTTAAGTATTTAAACAGTATGAAGCTTACATATATATAGATTATGTAACATAAATAGCCTGTGTGAATGCATGGGTTATGGATTAGTAGTCATAATAGTTAAATTGTTCTTACTACTCATCTGCTTGCCCCTTCCCTAAATGTTAATGGATGTACTAATGCTAGAATAGAATGGCACGCGTGAACTCACAGTATCCCCGAACATCCTTCACGGCAAAAGATTCAGTTACTCCTTCTTGAATTCTTACTGAGATTCTTTCATCAGCTGCCATAACCCCCAACTTGAACTTTCTGCTTGGAACAAAACTAGAATTGTCTTGGAATTTGGCACTATTGAGATAACCCACACCATTTTGCAGTCTAAAATACAGCTTCCCAGACAGCAAATGGCCTTTATGAGGTCGTCCAGGTACTATTTTACTATGGAAATACTCTTTAGTCCACTGTCCCTTGTTATCATCGTCAAAGTCACCGTCAATGGCTACAATATGAACTCTCATCGAAGAAAATGGTTCCATTGTTACGATCTTGTCGTTATGATCATATATGGCTACCTGAAGGGGGTTCTCATCATCTGCTTCTATTTTGTGTGTTGAGTACTTATCGTTACTGCATGAATTTACAAATTGTAATCGAAGTGGCACGGTGCAGTTCTGATCAGAATCATCAGATAACAT
More
|
||||||||||
| CDS seq | ATGTTATCTGATGATTCTGATCAGAACTGCACCGTGCCACTTCGATTACAATTTGTAAATTCATGCAGTAACGATAAGTACTCAACACACAAAATAGAAGCAGATGATGAGAACCCCCTTCAGGTAGCCATATATGATCATAACGACAAGATCGTAACAATGGAACCATTTTCTTCGATGAGAGTTCATATTGTAGCCATTGACGGTGACTTTGACGATGATAACAAGGGACAGTGGACTAAAGAGTATTTCCATAGTAAAATAGTACCTGGACGACCTCATAAAGGCCATTTGCTGTCTGGGAAGCTGTATTTTAGACTGCAAAATGGTGTGGGTTATCTCAATAGTGCCAAATTCCAAGACAATTCTAGTTTTGTTCCAAGCAGAAAGTTCAAGTTGGGGGTTATGGCAGCTGATGAAAGAATCTCAGTAAGAATTCAAGAAGGAGTAACTGAATCTTTTGCCGTGAAGGATGTTCGGGGATACTTAACAAAGAAGAATCCCAATCCATCCCCACGTGATGCTGTATATAAATTGAGTAAAATTGCAAAGAACGGTGACAGGCACAAGTTACTAGAGCAGAATGGTATCAAGACAGTGGAGGACTTCTTATCTTTCTACAATAATAGCGAATATGATCTGCGTAAAATTTTGGGGAAGATTTCCGACCAAGATTGGGATTTGATCATTGCTCATGCTCAGAAATGTAGACCAGGAGTTTACTCTAGTTGCCTTAAAGAGAGCAGTGTGTCTCATGAACATGAGGCTCTTTCTATAAGAAATGACAGCTATTGCCTTCAGGAATCATTCTCAATGCAACCAAGCCATACACTACAAGAACAACTTGATGTGCAAGGAATGCATCCGCAAATTTCATCAACCTATGATGGATCTGTTGGATTATCAGACATTGGTGTGCCATATAGATTCCAGCCAGACACTTTGGACAAGAACTTGATGCACCATGGACAACTTGAAGGCATCCAAGTTGTTATTGATCCACACGTTCCATCGGTAGAAAGTGTGGATATGCCAGTTTCGTCCATGGATAACAGTACCTTAGAAGTGTTTAGCTCACAGCAACAACATTCTTTCAAGTGCAACAATACACCTGAACTTGGGAATGGGCTATCACAGGTTAATTCATTTGATTGGAACTTGGACTGTCTCGATGGCGACGTAGATGTAAATGCATTGTGGGGATCTAAGGAAGATTTTCCGAGTGAAAATATGGGGCAGGGGGGTCATGTTTACACAGAAACTCCAGGTCCAGGAGGTTCCTACAGTGCAGCTGAGCAAAACTTGGGTCATTTGTCTGTCAGTGAAGCAGGAAGCATAAGCTACAATGAAATTTCGGCTGTCAATGAAGCAGGCAGTTGGAGCCACAGGTCACTTTCTACTCCACCACCTGTCAGGGGAGCAGCCAGTATGAGAAACAGGGGAATTTCATTTTCGTCTCCAAGGGGAACAGGCGGTAGAAGGGGAACAGGTCGTTGGAGAAGGGCAGAAGGTAGTGGCGACTACGGGACAGACAATATCAGCAATACAAGTACATACTTTACCGGTGAAGAACAATAG
More
|
||||||||||
| Protein seq | MLSDDSDQNCTVPLRLQFVNSCSNDKYSTHKIEADDENPLQVAIYDHNDKIVTMEPFSSMRVHIVAIDGDFDDDNKGQWTKEYFHSKIVPGRPHKGHLLSGKLYFRLQNGVGYLNSAKFQDNSSFVPSRKFKLGVMAADERISVRIQEGVTESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLLEQNGIKTVEDFLSFYNNSEYDLRKILGKISDQDWDLIIAHAQKCRPGVYSSCLKESSVSHEHEALSIRNDSYCLQESFSMQPSHTLQEQLDVQGMHPQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTPELGNGLSQVNSFDWNLDCLDGDVDVNALWGSKEDFPSENMGQGGHVYTETPGPGGSYSAAEQNLGHLSVSEAGSISYNEISAVNEAGSWSHRSLSTPPPVRGAASMRNRGISFSSPRGTGGRRGTGRWRRAEGSGDYGTDNISNTSTYFTGEEQ |
||||||||||
| Function | Calmodulin-binding protein 60 B [UniProtKB/Swiss-Prot:Q9FKL6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0663100 | Os11t0663100-00 | Chr11 | 26682547 | 26684867 | - | irgsp1_rep | ||
| CDS seq | ATGTTATCTGATGATTCTGATCAGAACTGCACCGTGCCACTTCGATTACAATTTGTAAATTCATGCAGTAACGATAAGTACTCAACACACAAAATAGAAGCAGATGATGAGAACCCCCTTCAGGTAGCCATATATGATCATAACGACAAGATCGTAACAATGGAACCATTTTCTTCGATGAGAGTTCATATTGTAGCCATTGACGGTGACTTTGACGATGATAACAAGGGACAGTGGACTAAAGAGTATTTCCATAGTAAAATAGTACCTGGACGACCTCATAAAGGCCATTTGCTGTCTGGGAAGCTGTATTTTAGACTGCAAAATGGTGTGGGTTATCTCAATAGTGCCAAATTCCAAGACAATTCTAGTTTTGTTCCAAGCAGAAAGTTCAAGTTGGGGGTTATGGCAGCTGATGAAAGAATCTCAGTAAGAATTCAAGAAGGAGTAACTGAATCTTTTGCCGTGAAGGATGTTCGGGGATACTTAACAAAGAAGAATCCCAATCCATCCCCACGTGATGCTGTATATAAATTGAGTAAAATTGCAAAGAACGGTGACAGGCACAAGTTACTAGAGCAGAATGGTATCAAGACAGTGGAGGACTTCTTATCTTTCTACAATAATAGCGAATATGATCTGCGTAAAATTTTGGGGAAGATTTCCGACCAAGATTGGGATTTGATCATTGCTCATGCTCAGAAATGTAGACCAGGAGTTTACTCTAGTTGCCTTAAAGAGAGCAGTGTGTCTCATGAACATGAGGCTCTTTCTATAAGAAATGACAGCTATTGCCTTCAGGAATCATTCTCAATGCAACCAAGCCATACACTACAAGAACAACTTGATGTGCAAGGAATGCATCCGCAAATTTCATCAACCTATGATGGATCTGTTGGATTATCAGACATTGGTGTGCCATATAGATTCCAGCCAGACACTTTGGACAAGAACTTGATGCACCATGGACAACTTGAAGGCATCCAAGTTGTTATTGATCCACACGTTCCATCGGTAGAAAGTGTGGATATGCCAGTTTCGTCCATGGATAACAGTACCTTAGAAGTGTTTAGCTCACAGCAACAACATTCTTTCAAGTGCAACAATACACCTGAACTTGGGAATGGGCTATCACAGGTTAATTCATTTGATTGGAACTTGGACTGTCTCGATGGCGACGTAGATGTAAATGCATTGTGGGGATCTAAGGAAGATTTTCCGAGTGAAAATATGGGGCAGGGGGGTCATGTTTACACAGAAACTCCAGGTCCAGGAGGTTCCTACAGTGCAGCTGAGCAAAACTTGGGTCATTTGTCTGTCAGTGAAGCAGGAAGCATAAGCTACAATGAAATTTCGGCTGTCAATGAAGCAGGCAGTTGGAGCCACAGGTCACTTTCTACTCCACCACCTGTCAGGGGAGCAGCCAGTATGAGAAACAGGGGAATTTCATTTTCGTCTCCAAGGGGAACAGGCGGTAGAAGGGGAACAGGTCGTTGGAGAAGGGCAGAAGGTAGTGGCGACTACGGGACAGACAATATCAGCAATACAAGTACATACTTTACCGGTGAAGAACAATAG
More
|
|||||||
| Protein seq | MLSDDSDQNCTVPLRLQFVNSCSNDKYSTHKIEADDENPLQVAIYDHNDKIVTMEPFSSMRVHIVAIDGDFDDDNKGQWTKEYFHSKIVPGRPHKGHLLSGKLYFRLQNGVGYLNSAKFQDNSSFVPSRKFKLGVMAADERISVRIQEGVTESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLLEQNGIKTVEDFLSFYNNSEYDLRKILGKISDQDWDLIIAHAQKCRPGVYSSCLKESSVSHEHEALSIRNDSYCLQESFSMQPSHTLQEQLDVQGMHPQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTPELGNGLSQVNSFDWNLDCLDGDVDVNALWGSKEDFPSENMGQGGHVYTETPGPGGSYSAAEQNLGHLSVSEAGSISYNEISAVNEAGSWSHRSLSTPPPVRGAASMRNRGISFSSPRGTGGRRGTGRWRRAEGSGDYGTDNISNTSTYFTGEEQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0663100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0664800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022940 | SBH | 0.182261 | 0.998526 | 0.420333 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022980 | SBH | 0.029138 | 0.621788 | 0.708350 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022710 | RBH | 0.100526 | 0.403067 | 0.573230 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022250 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022610 | SBH | 0.0 | 1.171068 | 1.044557 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0397200 | RBH | 0 | 4.6595845 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023520 | RBH | 0.0 | 0.000000 | 0.019496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0419900 | SBH | 0.4964785 | 1.2705415 | 0.196498 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023070 | RBH | 0.018341 | 0.027610 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023250 | SBH | 0.224358 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022860 | RBH | 0.000000 | 2.070718 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022760 | SBH | 0.035795 | 0.000000 | 0.239295 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023200 | SBH | 0.157623 | 2.546144 | 0.832399 |
