Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0368100 | OGI:10038750 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:11537637-11538948 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGTGGAGCTCGCCCTCGCCCTCAAGGGCCTCAGCCAGGACCTCGTCGGCATGAGCGATCTCCTCCTCGCCTCTAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACAACGGCAAACCCATCTGCGAGTCGCGGATCATATTAGAGTACATCATCGATGAGGTCTTCCCCGTCGACGGTGCCGCCCTCCTCCCCGCCGACCCCTATGACTGGGCTGTCGCTCGCTTTTGGGCTGCCTACATCGATGACAAGGTATCTATAAGTAATAACTCCCAATGTTCTAAAATAAATCTTTACCTATATATAAATCTGAACATGTAGCTGTACTTTAGGACGAATGTAGCTGTATTTTGAGACGAAGGGAGCGAGTAATTTGTGTCATAGACTCATAGTTGGTCCAAGCATTTTTAATCTCTCGTGTAAATGGTGATAATCAGTCATGTGATTTTTTTTGATTTTTTTTAAAGAAGGGTAATTTTTACCCAGCCGCTATATCCAACCGGATAAATGTAGCCTTTTTAAATTGGGAACTTAGCCATCAAACAGGGAACTTAGCCCTCAAATAACCCAATATGAAATTGGGTACTATGAAGATTTGAACTCAGGACTTTGAGATATTACTCATGTCATTGCAACTATTAGGCTATGTGCCCTTTCGCAATCACTCATGCGATGGCTGACAATGTGCATGCAGTACATTTTGTCGCGCCATGGGCGCCGATGTTCAAGGGGAAGACAGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAAACACTGGAGGGAGCCTTGAAGGGTTGCTCAAAGGAGAAACCCTTCTTCGGTGGCGGCACCGTTGGGCTCGTGGATATCATGCTGGGTGCCCATATCCCTGGGGTGAGGGCGACCGAGGTTCTCACCGGTGCCAAGATCTTCAACGCTGCAATTACCCCCCTTTTGGCCTCATGGACGGAGCGCTTCGGTGAGCTTGACGCTCCCAAGAAGGTGTTGCCGGATGTCGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCACAGTGGGCTGCCGCTGGTGCTGCGGCGGCGGCGGCTTCAAAGAGCTGATTGGCCGGCATTGCGACGTACTTTTTCCGTCTCAAAAAAAAACAAATTCTAGAGTTTGATTCTTTTTAGGACAGAGGAGTCTAAAACTCCCGTTTTTGCTTAATTTGGAGGAAATAATGTGCTTGTTGCTGAAAAGTAGTGGAGACCAGACAGATTAATTAGTTGCTTATTTGACTTGGTTGTGAGTGTAGAATAAATGTTTCTGTTAGTCGCT
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| CDS seq | CAAGTACATTTTGTCGCGCCATGGGCGCCGATGTTCAAGGGGAAGACAGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAAACACTGGAGGGAGCCTTGAAGGGTTGCTCAAAGGAGAAACCCTTCTTCGGTGGCGGCACCGTTGGGCTCGTGGATATCATGCTGGGTGCCCATATCCCTGGGGTGAGGGCGACCGAGGTTCTCACCGGTGCCAAGATCTTCAACGCTGCAATTACCCCCCTTTTGGCCTCATGGACGGAGCGCTTCGGTGAGCTTGACGCTCCCAAGAAGGTGTTGCCGGATGTCGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCACAGTGGGCTGCCGCTGGTGCTGCGGCGGCGGCGGCTTCAAAGAGCTGA
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| Protein seq | QVHFVAPWAPMFKGKTEEEKAEGIKQILAAVETLEGALKGCSKEKPFFGGGTVGLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERFGELDAPKKVLPDVDGMVEYVKRRQAQWAAAGAAAAAASKS |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0368100 | Os10t0368100-01 | Chr10 | 11537637 | 11538948 | + | irgsp1_rep | ||
| CDS seq | CAAGTACATTTTGTCGCGCCATGGGCGCCGATGTTCAAGGGGAAGACAGAGGAGGAGAAGGCGGAGGGGATAAAGCAGATACTCGCGGCGGTGGAAACACTGGAGGGAGCCTTGAAGGGTTGCTCAAAGGAGAAACCCTTCTTCGGTGGCGGCACCGTTGGGCTCGTGGATATCATGCTGGGTGCCCATATCCCTGGGGTGAGGGCGACCGAGGTTCTCACCGGTGCCAAGATCTTCAACGCTGCAATTACCCCCCTTTTGGCCTCATGGACGGAGCGCTTCGGTGAGCTTGACGCTCCCAAGAAGGTGTTGCCGGATGTCGACGGGATGGTTGAGTACGTCAAGAGGAGGCAGGCACAGTGGGCTGCCGCTGGTGCTGCGGCGGCGGCGGCTTCAAAGAGCTGA
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| Protein seq | QVHFVAPWAPMFKGKTEEEKAEGIKQILAAVETLEGALKGCSKEKPFFGGGTVGLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERFGELDAPKKVLPDVDGMVEYVKRRQAQWAAAGAAAAAASKS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0368100 | RBH | 0.0 | 0.000000 | 0.656357 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22310 | RBH | 0.0 | 0.000000 | 0.527153 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017880 | SBH | 0.0 | 3.343572 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008260 | RBH | 0.0 | 1.236097 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017660 | SBH | 0.516216 | 8.552260 | 0.252772 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0199000 | RBH | 0.035179 | 0.881868 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0212900 | RBH | 0.125444 | 0.0798195 | 0.0407925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008060 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017890 | SBH | 1.660139 | 16.673845 | 4.585860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008290 | RBH | 0.0 | 0.0 | 0.0 |
