Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0539500 | OGI:09062380 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:21243207-21245827 | ||||||||
| Gene Symbol | OSK20 | ||||||||||
| DNA seq | AGCAGAACAACCAGCAATCATTTCCTTCTCGCTCCAGAGTGCACAAAACAGAACGGAGTCAGCTAAATAGTCTGCTCTCCCAACCAACTAACGACGAACTAACCCTAATTACAACTTTCTTAAAGACAGTTCAAGCAGAGAGTTCATAGCTGCTCCAGGATCAACTTCTCGACATGACGCGCTTCCCCTTCCTTGCTGGTCATTCGCATGAGATGGTTGTTGCTTTTTTTTTGGGGGGGGGGGGGGGGGGGTCTTCATTCGAAGGCCCACTGGTTCTCCCTCCTCACCTCCTCTTCTTCCTCGGGGGTGAAGTCATTCTTGATGTTGAAGGTCTTGCGGATCTCCTCTGGTGTCTTCCCCTTGATCATGTCAGCCACGGTCTGGCAGGTCAGATCCAGCAGTCCCTTGATGTTGAGGTAGTTTGCAGCCTGAAACACAAACATGCACATGAATCTAATCGACTTTGTACATGAATGATAAAAAACAATATACATGGATACAACAGAAGCATGAGACAATCATCCAGCAGCTGCATGATGGGTAGGAGCAGTGTTCATAATTTAGTGAATTATCAAGATACAGAATGTAGAATGGCTATTGCACTAAGCAAGTTTAGGTGTTCCCTTGCTACTCTACATACTCTATACCATGTCTGATCAGCACAATGCACACTGGTTAGTGGCAAGAAAACATGTAAAGCCAAGCTGAGAACTGAAGAATTCCAATACAACACAGAAGATTATTAACAACAAATGGATAATCAAGAACGAACAGATAATCAAGACAGAACGATTGTTTCGTACATAAGTTAGGAAATCGATGACATACTACCAATGAAAATACGCCACTGTAAGCCAATAACATGCACATAGATTTTTATATCAACTCAACTATCACTACTCAAAGCATTGCATTCCATGATGAAGAAAATACCAAATGCTATTTTTTTAAGGTTAGATTATCTCATGCCTTCTTGCCCCATGGAACGAGCATGAAAAAATAACACCTCCATTATAGGCCACAACAGACATCAGTTAAACCATTTTACAAATATCTTAACTAGACATTTCAAAACTATTTGGATACTGACTAGAGCATCCCAAAGAATCCTAAGACATGTCCACAACAAATATATGCACCAAACAACTAACAAGAAATACACACAAAATAAGCACCATTCAACCAGCTTGTACTTGCATTAACATCTTTTAATATTTCGCTTCAAGGCTTCTAATACAAGCACATCAGAATCTCCAGTCATGCATCACAATCACCAGTCATGCTGTTAGCAGTCAACAAATTATTAAAACTCTCTTGAATTTAAAATATTAAACCACAGCCATCTGATTGTACAAATTAAAAAATGTGAATACAGTGAAACCTCAACAAGCTACAAATTCTGAACCCATAACACCAAAACAGATTAACAGATTAAGATAACCAGTTCTGTGATCCTAGAAACTGACTATGGCCCTGCAAAACGATTAGCAGACAGCAAAGCCATCAAAATACCACCTAATCAGTCACAGCCTCCTATAACACAACAAATAAAATGATCCCATCATAAAGAAATTATAATCTCTCTACACCTCCTACATAGGTAGTAAAATAATTTCACACTAGGCACATGAGTGAAGCAATGAGGATCAGGTTGAATATGAAACATGGAGATGATAACACTTGATGGCCTACAATACCACTTTATATAATAAAAAAAAAGTGTGTTCGAAATACAGGTCTCTACTCTCTAGCCAATGATGCCTGAAGAACCTACCACATTCATAAACAATTCACAACACCCAAACCCCCAACTAACTGAACTAATCCTAAACCACAATGACCCTCCTAAACTGAAACACCGGTAGCATCACATAATTTTTTTATAAGTCAGAGCAAGAAAGCCAATCTACCTCCAAAAGTATCCTTGTTTTCTTTTCTCTTTTTAATTTCAGAAGGACTGAATTTCCAATCTACTATCCAGCAACCAGATCATCACCCATCGATGGAGGCGCATAATCACAAACCACAATTTAACAATCATCACAAAGGGCCAAAACTTCCAATCTACTATCAACAGAGGCGCATAACCACAACAGACGCACAATCAAACAATCATCACACAGTTCATGGAGATGAAACATGAGCAGAAGAAAAACAAAGGGGGGGAGCGCGCGGGGCGGGAGGCATGTTCTCACCAGGATGAGATCGAAGAGGGTGGACTGGTCGACCTTGACGAACTCGGCGTCGAACGTCTTGAGCTCGTCCTCGACGGCCTTGTTGGCCTCCACGGCGGCGGGGGCGGGGGCGTCGCCGTCGGCGGCGGCGGCCGCCCCGCCGCGCGCCTCGACGTGCTTGCTGCAGTACTCGATTACCTTGGAGAGGATCTTGGCGGAGACGTTGGGGAGCGGGATGCCGGTGTCGGCGCACTTGTCCTCGATCATGTGGCGGATGGTCTGGGACTCCATGGCCACGGCCTCCGCGACCTCGAACACCTGGCCCTCGCAGCTGCGGAGGGTGATCATCGCCTTCGTCTCCGCCTCGGCCGCCATCGGATCGACGAGAGAACAAACCCTAGAAAGCGATGGAATAGATTGGGATTGGGGGTGGGTTTCTTCCTCGGG
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| CDS seq | ATGGCGGCCGAGGCGGAGACGAAGGCGATGATCACCCTCCGCAGCTGCGAGGGCCAGGTGTTCGAGGTCGCGGAGGCCGTGGCCATGGAGTCCCAGACCATCCGCCACATGATCGAGGACAAGTGCGCCGACACCGGCATCCCGCTCCCCAACGTCTCCGCCAAGATCCTCTCCAAGGTAATCGAGTACTGCAGCAAGCACGTCGAGGCGCGCGGCGGGGCGGCCGCCGCCGCCGACGGCGACGCCCCCGCCCCCGCCGCCGTGGAGGCCAACAAGGCCGTCGAGGACGAGCTCAAGACGTTCGACGCCGAGTTCGTCAAGGTCGACCAGTCCACCCTCTTCGATCTCATCCTGGCTGCAAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACCGTGGCTGACATGATCAAGGGGAAGACACCAGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGA
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| Protein seq | MAAEAETKAMITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEARGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE |
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| Function | SKP1-like protein 20 [UniProtKB/Swiss-Prot:Q651E8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0539500 | Os09t0539500-01 | Chr09 | 21243207 | 21245827 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGCCGAGGCGGAGACGAAGGCGATGATCACCCTCCGCAGCTGCGAGGGCCAGGTGTTCGAGGTCGCGGAGGCCGTGGCCATGGAGTCCCAGACCATCCGCCACATGATCGAGGACAAGTGCGCCGACACCGGCATCCCGCTCCCCAACGTCTCCGCCAAGATCCTCTCCAAGGTAATCGAGTACTGCAGCAAGCACGTCGAGGCGCGCGGCGGGGCGGCCGCCGCCGCCGACGGCGACGCCCCCGCCCCCGCCGCCGTGGAGGCCAACAAGGCCGTCGAGGACGAGCTCAAGACGTTCGACGCCGAGTTCGTCAAGGTCGACCAGTCCACCCTCTTCGATCTCATCCTGGCTGCAAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACCGTGGCTGACATGATCAAGGGGAAGACACCAGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGA
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| Protein seq | MAAEAETKAMITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEARGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0539500 | RBH | 0.000000 | 0.565164 | 16.764931 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36830 | RBH | 0.000000 | 0.387632 | 4.221694 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0144900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018080 | RBH | 0.230999 | 21.466476 | 7.009461 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018160 | RBH | 0.000000 | 6.145775 | 2.872241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018380 | RBH | 0.000000 | 25.021736 | 10.172627 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018130 | RBH | 0.098528 | 0.150246 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018320 | RBH | 4.897739 | 42.238892 | 26.447472 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0357100 | RBH | 5.069931 | 14.828766 | 62.552034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018110 | RBH | 0.185650 | 1.957638 | 0.918936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0345200 | RBH | 11.368479 | 14.2809885 | 21.7233475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018200 | RBH | 0.0 | 0.998575 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017950 | RBH | 0.210868 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017950 | RBH | 5.166640 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017940 | RBH | 0.145595 | 0.0 | 1.941090 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018070 | RBH | 0.091651 | 4.479232 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018460 | RBH | 0.0 | 3.223622 | 6.013437 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018320 | RBH | 1.571807 | 19.479641 | 16.623507 |
