Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0171600 | OGI:08010750 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:4191606-4194980 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAAAGAGGGGTAAAATCACAATTAGATATGAAAGTAGGGGTAAGAACACAATTGCCCCAATTGGATAATATCCCAATACAGGTTTTAATGACATTCAAGAGACTTATTACGACAAATCCAAAGCGTCTTATAATATAAAATGAATGGAGTAAATTGTCAACTCTCCTCACCAGACTAAAATGTCCTTAAAAATGTTCTTAAAAAATGATAAAAATCCCATTTTTAAAAGAATAAATCATGATGTTTCCCGTCCAAAGCTGAGAGTCTACTCTAGATGAGCTCGGTGTCGAACTTGAGGCAGATGCCCATGGAGAAGAGCTCCTGGTAGAGGATCTTGGCGCCATAAGGCACGCTCACCCTCACCACCTCCTCCGCCGACCTGCAGAACCTGCAGTACGGCCCCCTCACCTTCCGGCCGCCGCCGCCGTCGGCGGCGACGGCGGGCGACACGACGACGGCGGCGCGCTGGCATCGGCGGCAGACGTGGAGGCGCGACACGTCGCTGAGGAGGAAGAGGCGCTCGTGGAGGTTGGCGGCGGCGCCGTGGGCGAGGAGGCAGTCGCGCTCCATCTCGCCGAACTTGACGCCGCCGTACCGGCGGCGGTCCTCCACCGGCTGCCGCGTCAGCGGGTGCACCGGGCCGGTGTTCCGGAACTTGACCTTGTCCTCGGCCATGTGGTGGAGCCGCTGGTAGAACGTCGGTCCGGTGAACACCGGCGACGCCGCACGCTCGCCGGTGCGGCCGTTGATCACGCTCTCCCCTCCCCACCTGGAGAACCCAGCCCTGTTCAAAGAAACAAGAATTCCAAAGTTTTTCATCACATTTTCAGTTGCATCTGGTTACTGTTGTAGTTTCATGAAGAGAATTCGGTGAAAGTTGTTTGTTTGGGAATCTGGCTAAGAGTAAGAGGGGATAAAAATTGTAATGTTTCTAGTTCTATCTACTTTCATGAAGAGAAAACAATCAAGTTATTGAGAATCCAGCCCTGTCCAAGAGAGAGAGAGAGAGAGAGAGAAATTTTGTTCCCCATATTTTCAGTTAAGTTTCGTGCATCTGATTACTATTGTAGTTTCATGAAGATATTTCGGTGAAAGTTGATTGTTTGGGAATCTGGCTCAGATCAAGATGGAATAAAATTCATAACGTTTCTAGTTCTATCTATTTTCATGAAGAGAAATCAATCAAGTTATTGAGAATCCAGCCCTGTCCAACAAAAAGATCCATTGTTTTCCCCATATCTTCAGTTATATTTGACATAATTCAGTAGTTCAATCTAGTACTAGTTTCATGAAGTTCAGTTCAATTTCACATATTTTCAGTTAGAAACAATAATTCAATCAAGTTCATCATTTGAGAATCCAGCAGTAATCAAGATGGAACAAAATTTAACATTTCTAGTTTATCTCCACCTTGGAAATCCAGCCCTGACAAAATAAAATCCAAGTTTTTTCACCACATTTTCAGTTATATTTCTTACATTTGATTACTTCACTCTAGCTAGTTTCTTAAAGGGAATTCAGTTAAGTTCATCAAAATGGAACGAAAATTGGAACATACTTTCATTAAGAGAACTCAACCGAGTTCATAATTTGAGAACCCAGAGCTGATCAAAATGCAACAAAATTTGGAACATTTCAAGTTCTATCTACTTTCATGAAGAGAAATCAGTCAATTTTATTGATCATTTTGAGCAGCCCTGACAAAAAAACTACAACTCTTTTCCCCACGTTTTCAGTTGAATCTCATTCATTTTGCTAGTTCATTCTGACTAATTTCATAAAGAAAATGGGGTCAAGTTCATTAAAATAGAACAAAAATTAAAACACTTCTAGTTCTCTCTACTTTTATGAAGAGAAATCACTCAAGTTCATTATTTGAGAACCCGATTTTGATCAAAATGCAATAAAATTTCACATATTTCCAGTTCCGTCTACTTTCATGAAGAGAAATCAATCAAGTTCCTTGTTTGAGAACCCGATCAAAATGCAACAAAATTTTGCACATTTCTAGTTCTGTCTACTTTTTAATGGAGAGAAATTAATCAAATTTATTGTTTGAGAACCTGGCCTGGATTAAAATGCAACAACATTTGGAACATTTCTAGTTCTTCTACTTTCATGAAGAGAAACCAATCAAATTTACTGATCATTTTGGGCAGAATGAATTGCTTACTTGTGCAGCTGCTCTGTGATCACTTCCACAGATGGACTTGTGAACGGTGTCGCATACCGGGTGGCACCGCCGAGGGCGATTCCTTTGCCTAGTGCAGCTTCAAGAAGTTGGCCGGGAGTCTGACGAGTTGGAAAGCCATGGGGATTGATCACAATGTCAGGAACTATGCCTTGGTGAGTAAAAGGGAAGTTCTCCTGGGAATCCAAGAAGCCAATGACTCCTTTCTGGCCATGCATGCTGGCAAACTTGTCTCCAATGCGTGGCGAGCGAGTCTGCAGAGGTAATCAGATCAAAAAATTTACTAACTTTAACAAGTGTTCATCAGTTATCAGATTTACAAGTAGATCTTTTGGAACACGGGGAATAACAGTACTAATGTTCATCACTTGGGTGTTATGGCAGAGTAGACATGAGAAGATGAAAATGATTGATGTGTTATGGTATGGACACAATGAACTCTAATAGAATGTCGATTAGTGTAGAAAAAATCAGTTGGCCATTCAACTATTCCAATAGTGTGTCATAGAGAACTCCACTATCTTGCAAATTTATAAATGGTTAGTGCAGATTAATTTTGTAAAGATTGCATATTCACCTGTCTTAGAGTAACAAACGCAGAATTTGTCCCATCATCAGTAGCTGAAAGAACAACCTTCTCCACTATTCCTTTTTCAGTATGTAGCAGCTTGATGCTATGATCTTCACCAGAGTCTGAGACCTTTCCAATGATAATGTCATTACTCTGAAGACTTGCTCCAATATATGGTAAGCCATCAATATCTAAACTGTCAACCAGGCCTTTCTTGCTAGGAGTTTTTCCAAAATTGATATTTTCCTTGTGTTTTAATCGTTTGGTGATCTCTTTGTTTTCTATCAGTGCTTTATAGCTCTTAAAATGTTGTGTTCGAAACATGCCACGCTCTAAAGAGGCCCTATTCAATACCAAAGAATCCTCTTGGTTAAATCCCTGATGGACACTGATTGAGACTATTGCATTTTGGCCATTGAAATACTCTGGTCTGGCAAAGTCATGTTTGCTTCCAGATGTATAGTCTCTCTTACCAAGACAATCAGCAGCTACAGTTTTGAACAGAGGTCTCTGTGGATAATAGAGCTGATGGGAATGTGTATCAACTCTAAAGAGAGGATTCGTAGTGGAGTAGCCAATAGCCTGTTGCGATATCTTTTCAGCTTGCATTA
More
|
||||||||||
| CDS seq | ATGCAAGCTGAAAAGATATCGCAACAGGCTATTGGCTACTCCACTACGAATCCTCTCTTTAGAGTTGATACACATTCCCATCAGCTCTATTATCCACAGAGACCTCTGTTCAAAACTGTAGCTGCTGATTGTCTTGGTAAGAGAGACTATACATCTGGAAGCAAACATGACTTTGCCAGACCAGAGTATTTCAATGGCCAAAATGCAATAGTCTCAATCAGTGTCCATCAGGGATTTAACCAAGAGGATTCTTTGGTATTGAATAGGGCCTCTTTAGAGCGTGGCATGTTTCGAACACAACATTTTAAGAGCTATAAAGCACTGATAGAAAACAAAGAGATCACCAAACGATTAAAACACAAGGAAAATATCAATTTTGGAAAAACTCCTAGCAAGAAAGGCCTGGTTGACAGTTTAGATATTGATGGCTTACCATATATTGGAGCAAGTCTTCAGAGTAATGACATTATCATTGGAAAGGTCTCAGACTCTGGTGAAGATCATAGCATCAAGCTGCTACATACTGAAAAAGGAATAGTGGAGAAGGTTGTTCTTTCAGCTACTGATGATGGGACAAATTCTGCGTTTGTTACTCTAAGACAGACTCGCTCGCCACGCATTGGAGACAAGTTTGCCAGCATGCATGGCCAGAAAGGAGTCATTGGCTTCTTGGATTCCCAGGAGAACTTCCCTTTTACTCACCAAGGCATAGTTCCTGACATTGTGATCAATCCCCATGGCTTTCCAACTCGTCAGACTCCCGGCCAACTTCTTGAAGCTGCACTAGGCAAAGGAATCGCCCTCGGCGGTGCCACCCGGTATGCGACACCGTTCACAAGTCCATCTGTGGAAGTGATCACAGAGCAGCTGCACAAGGCTGGGTTCTCCAGGTGGGGAGGGGAGAGCGTGATCAACGGCCGCACCGGCGAGCGTGCGGCGTCGCCGGTGTTCACCGGACCGACGTTCTACCAGCGGCTCCACCACATGGCCGAGGACAAGGTCAAGTTCCGGAACACCGGCCCGGTGCACCCGCTGACGCGGCAGCCGGTGGAGGACCGCCGCCGGTACGGCGGCGTCAAGTTCGGCGAGATGGAGCGCGACTGCCTCCTCGCCCACGGCGCCGCCGCCAACCTCCACGAGCGCCTCTTCCTCCTCAGCGACGTGTCGCGCCTCCACGTCTGCCGCCGATGCCAGCGCGCCGCCGTCGTCGTGTCGCCCGCCGTCGCCGCCGACGGCGGCGGCGGCCGGAAGGTGAGGGGGCCGTACTGCAGGTTCTGCAGGTCGGCGGAGGAGGTGGTGAGGGTGAGCGTGCCTTATGGCGCCAAGATCCTCTACCAGGAGCTCTTCTCCATGGGCATCTGCCTCAAGTTCGACACCGAGCTCATCTAG
More
|
||||||||||
| Protein seq | MQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTELI |
||||||||||
| Function | DNA-directed RNA polymerases IV and V subunit 2 [UniProtKB/Swiss-Prot:Q9LK40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0171600 | Os08t0171600-01 | Chr08 | 4191606 | 4194980 | - | irgsp1_rep | ||
| CDS seq | ATGCAAGCTGAAAAGATATCGCAACAGGCTATTGGCTACTCCACTACGAATCCTCTCTTTAGAGTTGATACACATTCCCATCAGCTCTATTATCCACAGAGACCTCTGTTCAAAACTGTAGCTGCTGATTGTCTTGGTAAGAGAGACTATACATCTGGAAGCAAACATGACTTTGCCAGACCAGAGTATTTCAATGGCCAAAATGCAATAGTCTCAATCAGTGTCCATCAGGGATTTAACCAAGAGGATTCTTTGGTATTGAATAGGGCCTCTTTAGAGCGTGGCATGTTTCGAACACAACATTTTAAGAGCTATAAAGCACTGATAGAAAACAAAGAGATCACCAAACGATTAAAACACAAGGAAAATATCAATTTTGGAAAAACTCCTAGCAAGAAAGGCCTGGTTGACAGTTTAGATATTGATGGCTTACCATATATTGGAGCAAGTCTTCAGAGTAATGACATTATCATTGGAAAGGTCTCAGACTCTGGTGAAGATCATAGCATCAAGCTGCTACATACTGAAAAAGGAATAGTGGAGAAGGTTGTTCTTTCAGCTACTGATGATGGGACAAATTCTGCGTTTGTTACTCTAAGACAGACTCGCTCGCCACGCATTGGAGACAAGTTTGCCAGCATGCATGGCCAGAAAGGAGTCATTGGCTTCTTGGATTCCCAGGAGAACTTCCCTTTTACTCACCAAGGCATAGTTCCTGACATTGTGATCAATCCCCATGGCTTTCCAACTCGTCAGACTCCCGGCCAACTTCTTGAAGCTGCACTAGGCAAAGGAATCGCCCTCGGCGGTGCCACCCGGTATGCGACACCGTTCACAAGTCCATCTGTGGAAGTGATCACAGAGCAGCTGCACAAGGCTGGGTTCTCCAGGTGGGGAGGGGAGAGCGTGATCAACGGCCGCACCGGCGAGCGTGCGGCGTCGCCGGTGTTCACCGGACCGACGTTCTACCAGCGGCTCCACCACATGGCCGAGGACAAGGTCAAGTTCCGGAACACCGGCCCGGTGCACCCGCTGACGCGGCAGCCGGTGGAGGACCGCCGCCGGTACGGCGGCGTCAAGTTCGGCGAGATGGAGCGCGACTGCCTCCTCGCCCACGGCGCCGCCGCCAACCTCCACGAGCGCCTCTTCCTCCTCAGCGACGTGTCGCGCCTCCACGTCTGCCGCCGATGCCAGCGCGCCGCCGTCGTCGTGTCGCCCGCCGTCGCCGCCGACGGCGGCGGCGGCCGGAAGGTGAGGGGGCCGTACTGCAGGTTCTGCAGGTCGGCGGAGGAGGTGGTGAGGGTGAGCGTGCCTTATGGCGCCAAGATCCTCTACCAGGAGCTCTTCTCCATGGGCATCTGCCTCAAGTTCGACACCGAGCTCATCTAG
More
|
|||||||
| Protein seq | MQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTELI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0171600 | RBH | 0.0 | 0.0 | 1.435278 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07480 | RBH | 0.0 | 0.0 | 0.366204 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0641000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004830 | RBH | 0.0 | 0.0 | 0.711167 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004920 | RBH | 0.0 | 0.0 | 0.651596 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004860 | RBH | 0.0 | 0.0 | 1.974193 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004640 | RBH | 0.0 | 0.0 | 1.710495 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0062800 | RBH | 0.009734 | 0.066273 | 0.2574045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004480 | RBH | 0.0 | 0.0 | 0.323658 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0068500 | RBH | 0.006255 | 0.0203865 | 7.537432 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004750 | RBH | 0.0 | 0.0 | 0.221224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004600 | RBH | 0.0 | 0.0 | 0.136038 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004550 | RBH | 0.0 | 0.0 | 2.005213 |
