Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0654900 | OGI:07060020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:27512362-27514309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAAGGAGGTCTGTTTGCTCCAAAGAGGATCAGCCTCGGCAACTTTGCCATGGATTCTCTGAATTCGGACCTATCCAAGAATCAGCTATACGCTGTCCGGATGATGCACACATTACTGCAAAGTGATCTGACCAGGGCACGGTTGCTAGAGAAACTCACCGGTTCAACACAGACGATGGCCAGGTTAATCAGCATGTTGGACTGGAGTAGTAGACACCATTGTACAGCTATCAGGTTATATGCCGCCAAGGTCACTGCCGAGCTCGCAAAGAACCTCCGAGTTGGAACTGTCCCTGGGACATTGCAGCTTGTATCTACTCTTCTGGATGCTGATGGAAAGCCGAAAAGAGGGCACCCACTCCTGGATGCAGATGGTGATCAAGATCATTTTGTTGATATATTAGATAGACAAGATAAAAAACATGATATAGCTGGTGACCAAGAGCCGATTGAGGACACCGATAACCTGATGGAAACACCAACCCGATCAACGCACATTAACGACCAAAGATACATACCTAGAATTTTGCATAGGATACTGGCGTACTGGTCAATTCCCAAGGAGCAGCCATTGACAAACGATGATCTTCTCCCTGCACTAGGCATGTCAATCATATATAGCCTTGCTGGTTGTGATCAAAATAACTGCGCGAAAATCGACAAAGTAACTGACCTGATCCCCAAAATCATTGGATTCACAAGCTTCAGAAGTGCAATGGTAAATTCTGAAGCACAACAGAAGGTTCTCTTAAAGTCATCGTTGAAGGTGTTGCAGAGGCTCACAAGAATTGACGGCGAAATCGCCATAAAACTGCGGTATAAGATATCAAAACATCCCTTCTTATTGAGAAACCTTGCAGAGATCTTGGGAGACAGCAACAGTAATCAAGAACTAAGGAGGCTCGTGGCAGGAATCCTCAGAAACCTTGCAATTGACGGAGACACAAGGCAGGAGATTGGACAAATGAAAATGCTTATTACCGGGCTGATGAAGGCATTCCTCGATTCTAACGGATCATTTAGTTCAGATGTTGATTGCTTACTGCCAAAGATTGCCAGGCAAGCACTGGTAATGCTGTCATCAGAAAATCCGCACAACTGCTTCGTTATGTTGAAGGAACCAGATTTCATTCATAAACTAAAAAATATGATCCTGATCCATGATGACAAATACATATATGTGGCAGCAAGTCTATTGCGTAATATGTGCCTGCACGCTCAATATGAGCTCACAGAATCAGACCTAAAGGAACTATCTCACACATTGCAAGAGGTGAGCCCTGCTAATACATACTGCAAGTGCAATATAGAGGTGTATAGCATGCCATATCATTTGTGCATTTGCTGTCTATTAATTTTTGTCATTTTTGGTAAAAAGAAGGGGTCGTTTATTTACCAATGAACTATATAAGTATAACTTAGTTTGTACCAGTCTAAAAAAAACTTAGTTTGGACAATTATATTTATCATGCTACATGGCATTGCTGGTTCCACTACAGGTGTTGGAAAGAACAATGGACGCTGAGGGGGCAGAACTAGAAATCCTAATTGGCCTTAGTTCACAGATATGCAAACTCATTCCTGAAGAATTTTCCCAAGAGCTAGAGCACGGGCAGATGAAGCGGAGATTCATTAAGAGGCTAGTGGACGCACTGAATGCAAACATGAAACCAAATCCTCATTGCCCTGGGATCCGGAGGGTGATACTAGAGCAATGCATATACATGATGGAGTGCAATTCTTGCTATGCCAATTGTTTCAATGAATTCCGAATGATGGATGCAGTGTCGATGGTCGAAGAGACACCCTCAAGGGCTGAGAAGTACATGTTTTTCTTGGGTGACATGGGCTTCATGGAATGTAACACACCTCTCTCTGCCCTAGTGGAGAGGGCAAAAGAACTGATGAGTCGCCAGTGGCTGCATGCCATCAACAGTGCCAACTGA
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| CDS seq | ATGGAAGGAGGTCTGTTTGCTCCAAAGAGGATCAGCCTCGGCAACTTTGCCATGGATTCTCTGAATTCGGACCTATCCAAGAATCAGCTATACGCTGTCCGGATGATGCACACATTACTGCAAAGTGATCTGACCAGGGCACGGTTGCTAGAGAAACTCACCGGTTCAACACAGACGATGGCCAGGTTAATCAGCATGTTGGACTGGAGTAGTAGACACCATTGTACAGCTATCAGGTTATATGCCGCCAAGGTCACTGCCGAGCTCGCAAAGAACCTCCGAGTTGGAACTGTCCCTGGGACATTGCAGCTTGTATCTACTCTTCTGGATGCTGATGGAAAGCCGAAAAGAGGGCACCCACTCCTGGATGCAGATGGTGATCAAGATCATTTTGTTGATATATTAGATAGACAAGATAAAAAACATGATATAGCTGGTGACCAAGAGCCGATTGAGGACACCGATAACCTGATGGAAACACCAACCCGATCAACGCACATTAACGACCAAAGATACATACCTAGAATTTTGCATAGGATACTGGCGTACTGGTCAATTCCCAAGGAGCAGCCATTGACAAACGATGATCTTCTCCCTGCACTAGGCATGTCAATCATATATAGCCTTGCTGGTTGTGATCAAAATAACTGCGCGAAAATCGACAAAGTAACTGACCTGATCCCCAAAATCATTGGATTCACAAGCTTCAGAAGTGCAATGGTAAATTCTGAAGCACAACAGAAGGTTCTCTTAAAGTCATCGTTGAAGGTGTTGCAGAGGCTCACAAGAATTGACGGCGAAATCGCCATAAAACTGCGGTATAAGATATCAAAACATCCCTTCTTATTGAGAAACCTTGCAGAGATCTTGGGAGACAGCAACAGTAATCAAGAACTAAGGAGGCTCGTGGCAGGAATCCTCAGAAACCTTGCAATTGACGGAGACACAAGGCAGGAGATTGGACAAATGAAAATGCTTATTACCGGGCTGATGAAGGCATTCCTCGATTCTAACGGATCATTTAGTTCAGATGTTGATTGCTTACTGCCAAAGATTGCCAGGCAAGCACTGGTAATGCTGTCATCAGAAAATCCGCACAACTGCTTCGTTATGTTGAAGGAACCAGATTTCATTCATAAACTAAAAAATATGATCCTGATCCATGATGACAAATACATATATGTGGCAGCAAGTCTATTGCGTAATATGTGCCTGCACGCTCAATATGAGCTCACAGAATCAGACCTAAAGGAACTATCTCACACATTGCAAGAGGTGTTGGAAAGAACAATGGACGCTGAGGGGGCAGAACTAGAAATCCTAATTGGCCTTAGTTCACAGATATGCAAACTCATTCCTGAAGAATTTTCCCAAGAGCTAGAGCACGGGCAGATGAAGCGGAGATTCATTAAGAGGCTAGTGGACGCACTGAATGCAAACATGAAACCAAATCCTCATTGCCCTGGGATCCGGAGGGTGATACTAGAGCAATGCATATACATGATGGAGTGCAATTCTTGCTATGCCAATTGTTTCAATGAATTCCGAATGATGGATGCAGTGTCGATGGTCGAAGAGACACCCTCAAGGGCTGAGAAGTACATGTTTTTCTTGGGTGACATGGGCTTCATGGAATGTAACACACCTCTCTCTGCCCTAGTGGAGAGGGCAAAAGAACTGATGAGTCGCCAGTGGCTGCATGCCATCAACAGTGCCAACTGA
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| Protein seq | MEGGLFAPKRISLGNFAMDSLNSDLSKNQLYAVRMMHTLLQSDLTRARLLEKLTGSTQTMARLISMLDWSSRHHCTAIRLYAAKVTAELAKNLRVGTVPGTLQLVSTLLDADGKPKRGHPLLDADGDQDHFVDILDRQDKKHDIAGDQEPIEDTDNLMETPTRSTHINDQRYIPRILHRILAYWSIPKEQPLTNDDLLPALGMSIIYSLAGCDQNNCAKIDKVTDLIPKIIGFTSFRSAMVNSEAQQKVLLKSSLKVLQRLTRIDGEIAIKLRYKISKHPFLLRNLAEILGDSNSNQELRRLVAGILRNLAIDGDTRQEIGQMKMLITGLMKAFLDSNGSFSSDVDCLLPKIARQALVMLSSENPHNCFVMLKEPDFIHKLKNMILIHDDKYIYVAASLLRNMCLHAQYELTESDLKELSHTLQEVLERTMDAEGAELEILIGLSSQICKLIPEEFSQELEHGQMKRRFIKRLVDALNANMKPNPHCPGIRRVILEQCIYMMECNSCYANCFNEFRMMDAVSMVEETPSRAEKYMFFLGDMGFMECNTPLSALVERAKELMSRQWLHAINSAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0654900 | Os07t0654900-00 | Chr07 | 27512362 | 27514309 | + | irgsp1_rep | ||
| CDS seq | ATGGAAGGAGGTCTGTTTGCTCCAAAGAGGATCAGCCTCGGCAACTTTGCCATGGATTCTCTGAATTCGGACCTATCCAAGAATCAGCTATACGCTGTCCGGATGATGCACACATTACTGCAAAGTGATCTGACCAGGGCACGGTTGCTAGAGAAACTCACCGGTTCAACACAGACGATGGCCAGGTTAATCAGCATGTTGGACTGGAGTAGTAGACACCATTGTACAGCTATCAGGTTATATGCCGCCAAGGTCACTGCCGAGCTCGCAAAGAACCTCCGAGTTGGAACTGTCCCTGGGACATTGCAGCTTGTATCTACTCTTCTGGATGCTGATGGAAAGCCGAAAAGAGGGCACCCACTCCTGGATGCAGATGGTGATCAAGATCATTTTGTTGATATATTAGATAGACAAGATAAAAAACATGATATAGCTGGTGACCAAGAGCCGATTGAGGACACCGATAACCTGATGGAAACACCAACCCGATCAACGCACATTAACGACCAAAGATACATACCTAGAATTTTGCATAGGATACTGGCGTACTGGTCAATTCCCAAGGAGCAGCCATTGACAAACGATGATCTTCTCCCTGCACTAGGCATGTCAATCATATATAGCCTTGCTGGTTGTGATCAAAATAACTGCGCGAAAATCGACAAAGTAACTGACCTGATCCCCAAAATCATTGGATTCACAAGCTTCAGAAGTGCAATGGTAAATTCTGAAGCACAACAGAAGGTTCTCTTAAAGTCATCGTTGAAGGTGTTGCAGAGGCTCACAAGAATTGACGGCGAAATCGCCATAAAACTGCGGTATAAGATATCAAAACATCCCTTCTTATTGAGAAACCTTGCAGAGATCTTGGGAGACAGCAACAGTAATCAAGAACTAAGGAGGCTCGTGGCAGGAATCCTCAGAAACCTTGCAATTGACGGAGACACAAGGCAGGAGATTGGACAAATGAAAATGCTTATTACCGGGCTGATGAAGGCATTCCTCGATTCTAACGGATCATTTAGTTCAGATGTTGATTGCTTACTGCCAAAGATTGCCAGGCAAGCACTGGTAATGCTGTCATCAGAAAATCCGCACAACTGCTTCGTTATGTTGAAGGAACCAGATTTCATTCATAAACTAAAAAATATGATCCTGATCCATGATGACAAATACATATATGTGGCAGCAAGTCTATTGCGTAATATGTGCCTGCACGCTCAATATGAGCTCACAGAATCAGACCTAAAGGAACTATCTCACACATTGCAAGAGGTGTTGGAAAGAACAATGGACGCTGAGGGGGCAGAACTAGAAATCCTAATTGGCCTTAGTTCACAGATATGCAAACTCATTCCTGAAGAATTTTCCCAAGAGCTAGAGCACGGGCAGATGAAGCGGAGATTCATTAAGAGGCTAGTGGACGCACTGAATGCAAACATGAAACCAAATCCTCATTGCCCTGGGATCCGGAGGGTGATACTAGAGCAATGCATATACATGATGGAGTGCAATTCTTGCTATGCCAATTGTTTCAATGAATTCCGAATGATGGATGCAGTGTCGATGGTCGAAGAGACACCCTCAAGGGCTGAGAAGTACATGTTTTTCTTGGGTGACATGGGCTTCATGGAATGTAACACACCTCTCTCTGCCCTAGTGGAGAGGGCAAAAGAACTGATGAGTCGCCAGTGGCTGCATGCCATCAACAGTGCCAACTGA
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| Protein seq | MEGGLFAPKRISLGNFAMDSLNSDLSKNQLYAVRMMHTLLQSDLTRARLLEKLTGSTQTMARLISMLDWSSRHHCTAIRLYAAKVTAELAKNLRVGTVPGTLQLVSTLLDADGKPKRGHPLLDADGDQDHFVDILDRQDKKHDIAGDQEPIEDTDNLMETPTRSTHINDQRYIPRILHRILAYWSIPKEQPLTNDDLLPALGMSIIYSLAGCDQNNCAKIDKVTDLIPKIIGFTSFRSAMVNSEAQQKVLLKSSLKVLQRLTRIDGEIAIKLRYKISKHPFLLRNLAEILGDSNSNQELRRLVAGILRNLAIDGDTRQEIGQMKMLITGLMKAFLDSNGSFSSDVDCLLPKIARQALVMLSSENPHNCFVMLKEPDFIHKLKNMILIHDDKYIYVAASLLRNMCLHAQYELTESDLKELSHTLQEVLERTMDAEGAELEILIGLSSQICKLIPEEFSQELEHGQMKRRFIKRLVDALNANMKPNPHCPGIRRVILEQCIYMMECNSCYANCFNEFRMMDAVSMVEETPSRAEKYMFFLGDMGFMECNTPLSALVERAKELMSRQWLHAINSAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0654900 | RBH | 0.000000 | 0.399089 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46090 | RBH | 0.000000 | 0.172922 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0651600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025980 | SBH | 0.054827 | 2.017351 | 2.157070 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026020 | SBH | 0.0 | 0.226117 | 0.143747 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025870 | SBH | 0.000000 | 1.057909 | 0.927255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025590 | SBH | 0.020997 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025860 | SBH | 1.233862 | 0.0 | 3.784645 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0447700 | SBH | 1.501979 | 5.911939 | 2.230384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026350 | SBH | 0.064252 | 0.039168 | 0.444145 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0460200 | SBH | 0.513289 | 1.381618 | 2.597256 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025630 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025700 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026120 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025650 | SBH | 0.043011 | 0.394089 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025760 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025560 | SBH | 0.0 | 0.0 | 1.755012 |
