Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0286700 | OGI:02029900 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:10772392-10776515 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAATTAATGAGCGATAATTAATTAATCACCGCGAGCGTGATTTCAAGCCAAATCGTAAGCAACCGGCTTGATGACCGCTGGCGCGAGGCCCGGGTTAACGCCAACTTTGAGCACGAGCTTGAGGTCGTCGTGTTGGTCCTCCAGCGCGTCCCTGAGGAAGGCCACCATGAGGCCACCGATGGTCCTCCTGGCCACCTCCTTGGTGTCCCCGAGGTTCCTCATGCACATGCAGTTGTTGATGGCGTACGGCACGCCGTCGTCCAGCATGTCCAGGTGGCCGTTGTCCCGCAGCACAAAGTGGTATCGCGGCGGCGCGCACTCGTCGTAGAACTCGCAATGGTTCACGCCCGCCGGCGCGCATGGCGGGCCGCCGACGTGCCTCGGGCCTAGGCCGGTGCCGATTTTTTTGTGTTTTTAGACCGTAGAGATGGAAAAGGGGTATAGATGTCGGTGGTAATACTTTCAACACATATGTGCCGATACCTATTTAATATTTTATAGTAATGCGATGACCATCACCGTCAGGGGCGGAGCTAGAGAAATATGAGGGGGTTCCTAAGAGCAAGTTCAATAAGCTAGTTTAGCCGACGATAAAACTGCCACATCGGATTTGTCAATGAGCTGGACACGAGAGAGCATGAGTCGGGGATTAAATTATCACCGGCTACACACACATCCCAACGCAAGTGCAGCAACACTAGGCTAGCTTTGACTGGGGCATGCAATTGTGGGGTCCACGCGAGCTGGTGTGATGTAGGAATGGCGAGACGAAACGACAGCAACAAGATTAAAAAATTGGATGAGGAAGCTAGCTAAAGATTAAAAAATTGGATAATAGTCCATGTAAACCTGCTTATTGTATACATTAGCTCTTAGCAATGTCTATGCTGATGTGGTCATTTTTGCAGCCATTAGCGGGCGACACTATTGACCTTGCTCTAACTTTCTTTATGTAAAATACTGACATGCATAGTTCTAGAACGATATTATACTAAATAGTTACGTACCCAGTACATATAAGCATCATCTGTCTAATTGAAGGCAATATACAACAAGAAAGTGCATGGAAAAAATTTAAAAAATGCGTACCATAAAACCATGCCGGATTGAATTTTCCATCTTTGTTGGAAATAACTGATATGGGAAGTACAAGATCACGAGGTTGGCAAGACCCATTCTCTAAGTACTTTCTTTTTACCTTGTCTCTTTGGTTGGGATGATAATCATCAATTTCTTTTCTTAAGCCTGGATGATATTCGATCGTCTCTTGGCATCATCTAGTCGAAGGGATGAACTCTTCACATTGTTGGTACAATCCATTACTTTTCTTTTAAGAAATTTCTCCATAGAAACCTTTTAGAGATCAAATAAAAATTTTCAAGCTTTATATTGATACAACAAATTAAATATGAAAGTTGAGAGAAAGCGCTCACGTACTCTAAGGCTGCGTTCGTTAGGGGTAGTTCCCAACACCTCCTCCTCATCTTTCGCGCGCATGCTTTTCAAACTGCTAAACGGTGTGTTTTTTTCAAAAAAGTTTATATATGAAAGTTCATTTAAAAAATCATATTAATCCATTTTTAAAAAAAATTAGCTAAAACTTAATTAATCACGTGCTAAACGCTGCTTCGTTTTGTGTTCCAGAGAGTGAGGGTTCAACCCTCACTCCCGAACAGAGCTTAAGTGTTGGTTAACGGCTGTGATTTTTCATAGAAGCACAATCACTTGCAACCGTTCTACTCCGGTAATCCCCTCCGTTGACTGCAAACAACAAACAATAACCTAATCATTGGTAGACTTGCAAAATTAAAAGAAGGGAGCGGCAGGGTGCAACCACGCAAGACTTACCGGCCGGCCGGCGTTGGAGACTTGGAGTTGGGCTGCTTCTGCTTCACTCACTGCTTGGGCTGGTCGGCAACAGCAAGGCGCCAAGGCTGTAAGGGCAGGCTGGCAGGGCAGGGCAGCCACCAACCGGGCAGGGCTCAGGCTAGGCAGCTGGCCGCCGGTGTCTGGCTCGGGCACGCCGGCACGGCCGGATTGGCGCAGTGCTGTGCCGCAGTGGGCTGGGCAGAACGGGAAGACGGCGTCACATCCATAGAACGAGAGGTGAGAAACAATAGCGATTTTTGATTTTTGGAAGAGGAAACGTCGAACTCGAAACGGTGCCGCCCTGGCGCCTTGATTCCCGTCGCCGCCCAGCCCTACCTCTGCCGCGCGCTATCGATCTATGGGAAACACGAGCGAATTCTCGTATCCTCCTCTCAGTTGGGCCTGGTAGAGTTATAGTTTTGGGCCAGAGTTTTGGATCTTTGGGGGGAGGGGGGTTCCCTGGTTTGGACTGGGGACTGTCTATATGGTGGAGAATATAGGGGTAATAAGCTATTTAGAATTTTGGGCCGGGTTCTTGAGCACCCCCCTGGCCCATTGGGCTCCGCCCCACCGTCACCGGCATCCCCGGGTGGAGGGACCATGGCTTGAAGGTCAAGCGACGAGGGCCAGCCTGGAGAGGTCGGGCTTGACGCCGGGGAGGTTGAGGACGCTGCCGAGGACGTAGGCGAGGCCCTGCCGCTCGTCGGCGGCCCAGCATGCAACCTTCCTGGTGGCATCGTTCAAGTCGAGCGCGATGCCGTAGAGCTACGGCATGACGGCGATGAAGCCGTGGGAGGCGACATGCGACAGGAGGCCCTCGTACCTAGGGGCGGATCCACCCATTGGGCAGGGTTGGACGGCCGACCCAGCTACGGCCCGCACCGCCCCACCCCCCACCCTCCTTGGCTCTATCAACATTGGGCCCAAAATGAGCAGCCGAAGCGCTAGTGACCAGTCTAACCGCCGATCGCATAAGCCGCACGCGAGCGACGCCTCATTTCTTTCGACCTGGATCGGCGCCACACCATCAATTCGCCTTCGCGGCTTCCCCCTTCAGCCTTCACCGAGACACCGAGTCGACCAAGCGCCGACGCAGCGACGCCAGCATGCCGGTAGGTGCTAGCCCTATAGGGAGTAGGCGCGCTCCCGCGCACTAGCCGAAACGGTCCCGTCGCGGCGCCGCAACGCCGCTCACTCCATTCCTCCTGGCTCGGTGGCTCATGCAGGATGTAGTCCTACTGTTCTGGCTGCCTGGTTGACAGCCCTAATCACTAATCAATTGATTACTTCCATCAAGTCTGAACGGTGAACCACTTGGCTTTATGAGTTGTCTAATATTTGCAAATTAAGGCCCTGTTTGGAAGATTAGCCCAGAGCTAATGTTGGGAGCTCATGTTTAGTCATGAATTGGTAGGCTCAACATTAGCCTAGGGTGGTATGTTTGGATCGATAGGCTAATTCAAGGCTAAAAGGTGGAGAGAGAGTAGAAAGAGAGGAGAGAGAAGGAGAGAGAGAGCTGCTTTTTGATGGTCCCCACACAAAATTAGCCCCATTAGCACCCCTTGGAGGGGCTAATGTTTTGAGGGGGGCTAATTCACATTAGCTCAAAATTAGCCCACCTGTTTGGATCCTTGAGGGCTAAACATTAGCCCATGGAACCAAACAGGGCTTAACACGTCAACTATTATCTTTTGTTGTATAATGAATCATATATGACACAGATTATTAATTTATTTTAAAATGTTTTTGTTTCCCTTAATTTATTGGTTACACTATATTTCTATGTGATTATAGTATAAATATGATATTTAGTGTGTTTAGCTATTCTTATGAAACGACCATCTCCGCTAGAGATACAAGTGGGTAGTCCCGTTACCCGTATAAAAACCTGTTTACTAGTTCATTTCTTACATGGTAGTGCAAAATTTAGAATAAAAAATGAACTAGAAGTGAGATAAACGGGCTAAAAAAATCTGCTTGTCCGTCCGCTTGTATCCATAGATTCTCCGTCCTATCTTTATTTTAATCCTGCTTCCGCCACTGCTCGTACCAGCTGTTCACCATGTTGCAGCCGTGGAGGAAGATGGCGACCGGGTAGGTCCCGGCGTTGGCGGGGGCCACCACCATGAGCGGCTTGGGGCACCAAGCCTTGGGCACGCTCGGGAGCACGCTGTGGTCGACGTGTTTGGCCTCCACGCGGTGCGGCGCCGCATGGAACACCGCCACCATGCCGAGCGCACAGCCGATGTGCCAT
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| CDS seq | AAACACAAAAAAATCGGCACCGGCCTAGGCCCGAGGCACGTCGGCGGCCCGCCATGCGCGCCGGCGGGCGTGAACCATTGCGAGTTCTACGACGAGTGCGCGCCGCCGCGATACCACTTTGTGCTGCGGGACAACGGCCACCTGGACATGCTGGACGACGGCGTGCCGTACGCCATCAACAACTGCATGTGCATGAGGAACCTCGGGGACACCAAGGAGGTGGCCAGGAGGACCATCGGTGGCCTCATGGTGGCCTTCCTCAGGGACGCGCTGGAGGACCAACACGACGACCTCAAGCTCGTGCTCAAAGTTGGCGTTAACCCGGGCCTCGCGCCAGCGGTCATCAAGCCGGTTGCTTACGATTTGGCTTGA |
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| Protein seq | KHKKIGTGLGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLRDNGHLDMLDDGVPYAINNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLVLKVGVNPGLAPAVIKPVAYDLA |
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| Function | Chlorophyllase-1 [UniProtKB/Swiss-Prot:O22527] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0286700 | Os02t0286700-00 | Chr02 | 10772392 | 10776515 | - | irgsp1_rep | ||
| CDS seq | AAACACAAAAAAATCGGCACCGGCCTAGGCCCGAGGCACGTCGGCGGCCCGCCATGCGCGCCGGCGGGCGTGAACCATTGCGAGTTCTACGACGAGTGCGCGCCGCCGCGATACCACTTTGTGCTGCGGGACAACGGCCACCTGGACATGCTGGACGACGGCGTGCCGTACGCCATCAACAACTGCATGTGCATGAGGAACCTCGGGGACACCAAGGAGGTGGCCAGGAGGACCATCGGTGGCCTCATGGTGGCCTTCCTCAGGGACGCGCTGGAGGACCAACACGACGACCTCAAGCTCGTGCTCAAAGTTGGCGTTAACCCGGGCCTCGCGCCAGCGGTCATCAAGCCGGTTGCTTACGATTTGGCTTGA
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| Protein seq | KHKKIGTGLGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLRDNGHLDMLDDGVPYAINNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLVLKVGVNPGLAPAVIKPVAYDLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0286700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g18500 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012820 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012390 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0167300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0180500 | RBH | 0.094544 | 3.8774995 | 0.0169185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012430 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012520 | RBH | 0.0 | 0.0 | 0.0 |
