Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0152800 | OGI:02009340 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:2913665-2919109 | ||||||||
| Gene Symbol | NRPE1, OsNRPE1, OsFEM3, FEM3 | ||||||||||
| DNA seq | GCGAACTGGTAAGCTGCTTCTCCACACTGAAAAGCTCCAGTGCTTCAGCTTTTGCAGCAAGGGACTGTGGATAATAGATGTGCACACAATCACCGTCAAAGTCCGCTGCAAAAGGTGCGCATATGAGCGGATTGATCTTGACCGTATGGTCTTCATGGACATACACGCGAAATGCCTGGAGGGAATGCTTGTGGGTACTGGGTGGACGGTTAAGGAAAACAACATCCCCATCAACAATTCTCCTACTGATAGTCTGTCCGACTTTCAGGGTAGTGTGACCTTTGGATCCAACGGTGATGGCATAGGTTGCCTGGCCATCTCTGTAGGTCAAACACAATCCCTTATCCACAATCTCTTGCAACCTGTTAAGGTTGATGTCTGTTACCTGCTCTTCGAAAGTGATTCTTTTTGCCACTTCAGAAGGCAGTCCAATCACATCTACTCCAATATATGGATCTCCAGTAAGTACACTGCGTGATGAAAACCCTGACCCTTTGCTGATAAATAATGTTCTCATCTTCTCCAGCCATTGTTTTGTTGATAACGCAGAAGGATCAGTACTGATTGCAAATCTCTTGGTGTTGTCTTGAGGACCCTGCAAGACAACATTACCGTGGGACAAAAGAAACAAGACTAAATAAGTGATTGCACACAACTACTGGGAGAGAACGGTTGTAAAACATAAACCTATGGAAGAAAGCTTTAACATGAACTAATAGTTGATGAATTTCATGAACCTTTTCAGGTCCAACTACTATAGAAATGTTGTAGTTTCGGGTTTAATAGCTATAAGGGAGTTCGATAATATAGTTAATGTAGGGAAATGAGCAGTTTTGCTTAGTGTGTCTATGATCATGACGGACGTCCTATGCAATATGAAATTATGAATTCACTGACAATGCATGCATGGTTTGCATGGCTGTTTTCTCTAATAAAGGGTGCACATAGACGCACAATAGCAGACCGTTCATCCTCAATGATAACCATCCACAGTGTATACTCATGCACAGGATCAACCCGACACAAGATCAACCCAACCCATATGGATATGCTTGGTCATTTGTTGCTATCTTCTGAGAGATTTATGAATCAAAATCCCTTGTATGCATGTGCTCAGTCATTATAATTATATTAATATGAAGTCAAATGTAAATTCATATTTTTAGTTTGGTTACTATAAGGAGTATTGAAATTGTTGTAAAAATGAGCTTAAGTCGACAGCCTGTGCAAATGCAGTTGACAACTAGTCGATCCTAATTCATGGCTTGGTGACAATTACGATTACAAAACAAGTGACCAATTTGTGTGTGAGCAGATGAGCTACTCTCTGGAGCAATTCTCTAGCTGAGACAGGACTCTCCTGAACATGCTCTCATGTAAATATGGTAAATAAACTATCACATTAAGATCATGCAACATACCCTTGTAGTGCCCCTTAGATGTATGTACTGGGCAATAGAGAGCTGTAGATCACATGATTCAACTTCATGTGATTCAAAGTTTGGGGATCCAGCTCTTGACTTTTTTATCTGCTCTATTTTCTGAAGCACCTTCTTCAGCAGAGATATTGATATGTCCTGATATGAGAAGCAAGTATAATAAGCCATGACATAGAATTGAACCAGTCAGGAAAATTATGAAGAACAAACGTGAGGAAGAACTCACATAGGACATGATGCTCTGCCCATCTGTAAATTCTGGAATGTATAAACAATTTGGTGGCACGGGGAGGTATTTCATCACATATCCAGATTGAGCAATGTAACCACGAGCAGCTAGTTTCCTCTTCGTTTCTTCAGGAATTTTCTTCAATATATTGAGAGCCTAGCAAACGATACAGGAATGACAGACGATCATGTAGGTTGTTGGATATTTAGGAGCTTACAGAAGTCATAAAAATAAAGTAAATGAGATTAACCTCTTCCGGGAGCAAGGTCCTGCAGTGGGAGGTTCCACCATGGTGAAATCCATACTTGTCAAGGAAGTTCCATGAGCCTTCTGTCATGAATTTCCTAGGAGGCATTTTCAACTCTAAACGAAATGCACCATCTGCTGTTTTGATTTCTTTCAAAGATAATGCCGGAAGATCCTAAAGAAGTAAATGGCGATGAACATCAGTTGCCACTCATCCGGATTGTAAATGTTTATAGTGTCAAGGCTAGCATCTAATAAAAACAACTAAAGCTGTATACCAAAAGCCATACGCTAAAAAACTAATAAAAACATGATATAGTAATGCTTATGTCATGATTGTTGGCCACATCTTACAAGTTCCAATAACACTCCATCATACAGCATAACTTTGATCCTGTGTACTGTTTTCAACGACGACATGTTACTGAACAAACATAAAACTGAATACAGTGCTAGTCTGTCACTCATTCTCTGTGTAGACAAAAAAACTTTGCAATCAATGGTTTTATTGCAAAAGAATGCAACATAAAACTTATTCCGTAACTTAATATATAAGTGAAAGCATATGTATGGATAGGATTACTGAGTGAATACTGCAACAGCTATGTCAGTAACATTGGCTATGTTTTGCCCAAGCAGATTTTGATCAATTTAAAACCAACTAAGCTGTAACATCCGGACTATGTATGAGTGGATTAAACTTAAAACACTGGTATACTTGGTTCTTCGAGAGGCATATGTTCCATATTCCTACTACTTATACATGTCAAACAATGAAATATTATGTCTGTCTACTTCAAGGCAGAAGGGATATACAAAATTGTTGGGGTTGGAAAGTACCCGACAATAGTAGCATGACAATGCTGATGTGTTATCCTTTCCCTCTGTCTGTTTGACCTGATACATGGTAAGATCACATTAATTATAAGCCAAAGTAAGACAATTGGATTTAGAAAATTAAGACTTAGCTGCTTTGACCTGTATGTACCTTTCCTTTCTTGACGCGGAGGCATTTCAAACATACCACATTTAATATCTGCCTCAGTTCCGTTACATGGCAAGGGTGATATATAGGCACAGGCAGCTCAATGTACCCGAAATGCCCTAAATAAGCAGATAATTTTGGTTTTAAAGAAGAGAAAAGTGGATTGTCAGTTGCTACAGAACAATATCTTGGGCATGAAAAACTAATGAGAAGTCATCATGTGAGAACCTTCGCATTTTCCATTTTCTGAGGCACCACAGGACTCGCATTTTCCTGTCTCCAAAGGTAACCCAAGGAAGGGATTTCCGAGCTGACTAGGATGAGTGACAGGACAGTCATTTATAGAATAAGTACGCTGCAGGACAGAAAGGTGTGTATCAGTCATGTTGGAAATAAAAAACATAGTATTACAGTAGGAAATATAAATGGGAACTGTGCAGGATATATCCTTGCCATATTCATGAGAAACAAAAAATACAAAAAAAAAGAAGGCTAAATTCATATGAATCAAGTAGAAGAATGCAACATCAAGTATTTAAATCCACAAAATGTAAAACAGCTCCGTTAGTTAGCGAAAAAGCCCATGTATCAGCACTTCCAGATGCAAAAGAAAATGTCAGATTTCAGTATTAACTAACAAACAACATTCATCTTTACATTGCAAAAGTAAAGGTCAAAAAGAAAAGCTCTCATAGCAACACTCATCTTGATAAAATTAATCTTACAAATTCAAATTTTGCATTGCGATTGAATAGCACAGATCATGCATCATAGGTAAATCTAATTGAATGATATCAAATATAAAACTTGACCTGACGGGGGAGGGAGGGTAAGACCTTCTCACGCATGTCAAGAAAACCCCCTAACCCCCCTTACACAGCGGCACAGGCAGGTCAAGAAAACCCCCGAACCCTTGCCCCACCCTTACACAGCAGCACCGTAACCCGTGAAAATAGGCTGGTCCTTAGACCTATGCTTTGGCGTGGGACAAACGAGGGGATTTTTTTTCAACCCCAGCCTGAAATTCGCTCCCACAAGGAGTCGAACCCAGGACCTGAGGAGTGCTACTAGAGCCACCTAACCAACTCAGCTAGAGGTCCATTCGCAAATGATATCAAATATAAATGATAGAGAAAAGGAGGGTTTCTAGATCTCATCATCAAGAGTAGTTACATCAATCATATGCTCCCTTATCAGACGGTACTGTCTCTAATGGATCACAATGACCAAGTTGTCGCTTCTGCATGCATCTCTTTCTGCAAGCATTGCTGGTAAAAAGCATCAGAGAAGGAGAACTTACAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCTTGATGGCACCTTCAGCAACCGGAATTGCTGACTGGTCCTCCTCCATCTATCTGAAATAGACAAAGGGACATGGCTGTGTCCGTAAAAAGAATTGAAAAGAAAGAACCGGTAATACCAACAAGCTAGAACCCACCATTAGCTCCAATTAAACAACAAGAAATAGCAGAAACAAACAGAAAACAGCAACCTCAAATTCGCAAACGTAGGATAAAAACCGCTGTAATTATTTGTTGGCTTCTCGGAAAATACCACTCCAAATCAAACTTGCTTTTGATTTTAATCATTTGTTTCCTTTTCCTAATGGGTGCACTAACAAATATATTCCCTTAGAGAGTGTGCCCTTGTCTCCAAGCAAGTTAATTAGGGCAAAGTGGCTAAGCTAATATTAGGTTACTCCTACCGCTGAAGCTGCATTTCCTTCTGTTTCATCTTAGCTCTAGCATCCTACTACGACCCACCAAAAGTACACCCAACAACAGGGGAAGATCCAAAAGTACAAACAAACTGTTACTTGTATCAAGGTTAAGGCTCTGAAATTAAGAGAAAGAGCTTCTTCCAGATCTAGAAGAGAAGCTAGGGTTAACGAACGAACGCGAGCAAATTCCACACAAAAGCACTCCAGGTGGTAGAGTGAGAGATGAATCATCAGAAAGAGGATGCGGATGCTCACCAGGATCCCCTCCCCTCCCCTAACTAAAAAAACATTTCGCACAATCATCAGGATTCGTTTAGATTCCCAGCACACCACAAACTTCCCCCCAAACCCACACGGATTACTCCGGTGAACATTTATCATACATGAGATAGAACCCCTTAGTTGGGAAACAAAAAGGCATATCAAAGTGCACCAAAATTGAATAACCCACGCCTCTCCGCACGACCCAAATCTTCCCTTCCCTCGGGGAAACCCAAACCCCCCACAACAAGCGACGATGAACAGACAAACAACCAACCACATCCCCTTTCCCCCCATTTCTGCGAGTAACCCAGCGCCCCCCACATTGCGGAGACGGGATCAGAGCCCTCCTCCCCCTCACCTGAACACCCGCGCGCGCGCGCGCGCCTGCCTGCCTCCTCCCACCCTCGCCCTAAAACCCTAGCCACCGCGCGGGGGGTGGGGGCGGAGAGGGTTTTAGCCTGCAGCCAAGCCCTCGCCTCGGAGAAGCCGAGAAGGGAACCCACACGAGCGCGAGTGCGAGTGCGAGAGC
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| CDS seq | ATGGAGGAGGACCAGTCAGCAATTCCGGTTGCTGAAGGTGCCATCAAGAGCATCAAGCTTAGCCTATCCACTGAGGATGAGATTCGTACTTATTCTATAAATGACTGTCCTGTCACTCATCCTAGTCAGCTCGGAAATCCCTTCCTTGGGTTACCTTTGGAGACAGGAAAATGCGAGTCCTGTGGTGCCTCAGAAAATGGAAAATGCGAAGGGCATTTCGGGTACATTGAGCTGCCTGTGCCTATATATCACCCTTGCCATGTAACGGAACTGAGGCAGATATTAAATGTGGTATGTTTGAAATGCCTCCGCGTCAAGAAAGGAAAGGTCAAACAGACAGAGGGAAAGGATAACACATCAGCATTGTCATGCTACTATTGTCGGGATCTTCCGGCATTATCTTTGAAAGAAATCAAAACAGCAGATGGTGCATTTCGTTTAGAGTTGAAAATGCCTCCTAGGAAATTCATGACAGAAGGCTCATGGAACTTCCTTGACAAGTATGGATTTCACCATGGTGGAACCTCCCACTGCAGGACCTTGCTCCCGGAAGAGGCTCTCAATATATTGAAGAAAATTCCTGAAGAAACGAAGAGGAAACTAGCTGCTCGTGGTTACATTGCTCAATCTGGATATGTGATGAAATACCTCCCCGTGCCACCAAATTGTTTATACATTCCAGAATTTACAGATGGGCAGAGCATCATGTCCTATGACATATCAATATCTCTGCTGAAGAAGGTGCTTCAGAAAATAGAGCAGATAAAAAAGTCAAGAGCTGGATCCCCAAACTTTGAATCACATGAAGTTGAATCATGTGATCTACAGCTCTCTATTGCCCAGTACATACATCTAAGGGGCACTACAAGGGGTCCTCAAGACAACACCAAGAGATTTGCAATCAGTACTGATCCTTCTGCGTTATCAACAAAACAATGGCTGGAGAAGATGAGAACATTATTTATCAGCAAAGGGTCAGGGTTTTCATCACGCAGTGTACTTACTGGAGATCCATATATTGGAGTAGATGTGATTGGACTGCCTTCTGAAGTGGCAAAAAGAATCACTTTCGAAGAGCAGGTAACAGACATCAACCTTAACAGGTTGCAAGAGATTGTGGATAAGGGATTGTGTTTGACCTACAGAGATGGCCAGGCAACCTATGCCATCACCGTTGGATCCAAAGGTCACACTACCCTGAAAGTCGGACAGACTATCAGTAGGAGAATTGTTGATGGGGATGTTGTTTTCCTTAACCGTCCACCCAGTACCCACAAGCATTCCCTCCAGGCATTTCGCGTGTATGTCCATGAAGACCATACGGTCAAGATCAATCCGCTCATATGCGCACCTTTTGCAGCGGACTTTGACGGTGATTGTGTGCACATCTATTATCCACAGTCCCTTGCTGCAAAAGCTGAAGCACTGGAGCTTTTCAGTGTGGAGAAGCAGCTTACCAGTTCGC
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| Protein seq | MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSS |
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| Function | DNA-directed RNA polymerase V subunit 1 [UniProtKB/Swiss-Prot:Q5D869] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0152800 | Os02t0152800-01 | Chr02 | 2913665 | 2919109 | - | irgsp1_rep | ||
| CDS seq | ATGGAGGAGGACCAGTCAGCAATTCCGGTTGCTGAAGGTGCCATCAAGAGCATCAAGCTTAGCCTATCCACTGAGGATGAGATTCGTACTTATTCTATAAATGACTGTCCTGTCACTCATCCTAGTCAGCTCGGAAATCCCTTCCTTGGGTTACCTTTGGAGACAGGAAAATGCGAGTCCTGTGGTGCCTCAGAAAATGGAAAATGCGAAGGGCATTTCGGGTACATTGAGCTGCCTGTGCCTATATATCACCCTTGCCATGTAACGGAACTGAGGCAGATATTAAATGTGGTATGTTTGAAATGCCTCCGCGTCAAGAAAGGAAAGGTCAAACAGACAGAGGGAAAGGATAACACATCAGCATTGTCATGCTACTATTGTCGGGATCTTCCGGCATTATCTTTGAAAGAAATCAAAACAGCAGATGGTGCATTTCGTTTAGAGTTGAAAATGCCTCCTAGGAAATTCATGACAGAAGGCTCATGGAACTTCCTTGACAAGTATGGATTTCACCATGGTGGAACCTCCCACTGCAGGACCTTGCTCCCGGAAGAGGCTCTCAATATATTGAAGAAAATTCCTGAAGAAACGAAGAGGAAACTAGCTGCTCGTGGTTACATTGCTCAATCTGGATATGTGATGAAATACCTCCCCGTGCCACCAAATTGTTTATACATTCCAGAATTTACAGATGGGCAGAGCATCATGTCCTATGACATATCAATATCTCTGCTGAAGAAGGTGCTTCAGAAAATAGAGCAGATAAAAAAGTCAAGAGCTGGATCCCCAAACTTTGAATCACATGAAGTTGAATCATGTGATCTACAGCTCTCTATTGCCCAGTACATACATCTAAGGGGCACTACAAGGGGTCCTCAAGACAACACCAAGAGATTTGCAATCAGTACTGATCCTTCTGCGTTATCAACAAAACAATGGCTGGAGAAGATGAGAACATTATTTATCAGCAAAGGGTCAGGGTTTTCATCACGCAGTGTACTTACTGGAGATCCATATATTGGAGTAGATGTGATTGGACTGCCTTCTGAAGTGGCAAAAAGAATCACTTTCGAAGAGCAGGTAACAGACATCAACCTTAACAGGTTGCAAGAGATTGTGGATAAGGGATTGTGTTTGACCTACAGAGATGGCCAGGCAACCTATGCCATCACCGTTGGATCCAAAGGTCACACTACCCTGAAAGTCGGACAGACTATCAGTAGGAGAATTGTTGATGGGGATGTTGTTTTCCTTAACCGTCCACCCAGTACCCACAAGCATTCCCTCCAGGCATTTCGCGTGTATGTCCATGAAGACCATACGGTCAAGATCAATCCGCTCATATGCGCACCTTTTGCAGCGGACTTTGACGGTGATTGTGTGCACATCTATTATCCACAGTCCCTTGCTGCAAAAGCTGAAGCACTGGAGCTTTTCAGTGTGGAGAAGCAGCTTACCAGTTCGC
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| Protein seq | MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0152800 | RBH | 3.042086 | 2.953182 | 8.254133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05880 | RBH | 1.648888 | 1.388420 | 1.924492 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004070 | SBH | 1.667987 | 12.962762 | 13.334476 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004160 | SBH | 0.154417 | 2.553605 | 4.075217 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004080 | SBH | 1.683491 | 11.259690 | 16.329262 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003930 | SBH | 0.243113 | 0.317605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004070 | SBH | 7.745909 | 11.703172 | 27.088274 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0049500 | SBH | 7.4972355 | 23.227772 | 24.0218715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003990 | SBH | 0.458732 | 0.432636 | 1.663522 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0051600 | RBH | 7.067765 | 26.346938 | 37.532286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004150 | SBH | 0.277357 | 0.286615 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003940 | SBH | 0.992005 | 9.438944 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004200 | SBH | 3.381074 | 12.607147 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004170 | SBH | 1.137425 | 1.199401 | 2.951041 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003990 | SBH | 0.448298 | 4.212101 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004020 | SBH | 0.669461 | 4.139317 | 5.563557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003970 | SBH | 3.957184 | 44.724945 | 13.138061 |
