Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Oglab_008193 | OGI:03067870 | 47/50 | Os O.glaberrima: Ogla | OglaRS2 | DIADE | Chr03:23293612-23296323 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATGGCTGGAAGTGGTTCATGTATGAAGAAATCATGCGTTTGTTGCCAAAAATATTTGGAGCATTTGGATGGAAAGATGAACTGTTTCGTCAGGCGAATGACGGCCGATTCTAGACGTAGCATGGTAAGCCTCTGGCAAGTTTATTGCTTTCTGTTACTAAATATCTCAGCTGGATATACATTTAGAATTGGTTTAGTTCCTCCGACAAGTTTTATTTAGCTCTTAAATATCTTACAGTTCTATTGTGAATACCTTTTTTGTTTTAATCATATTTTCTGCTAATCTTGCTGTTAAAGAACTCTATATTTTTTTCATTATCTAAAAAAATACTTCTCAATGCTGTTGCTACAGATCATGCCATGTAAATTTGTGAACCATTTTGGAGGAGATTTCTCAGGGACCATAAAACTGCAATCCCCTAATGGTATTCTGTATGTTGTTGAAGTCACTAAGTGCAAGAATAAGACAGTCCTCAGATGTGGTTGGGAGGCATTTGTTGATGCCCATCACATAGAAGAGAATGACTCCTTGTTGTTCCGTCGCGTCGAGAATTCTCGTTTTGAGGTTCTGATCTTTGATTCCGATGATTGTGAGAAAGTATTTTCCTGTGCTGGCATAAGAAACACTTGTAAAAGTATTCAAGAAAAAAGTAGCAGCTCTTGTGATGATACTGCAGAATCATCAGAGAGTGAAGGATTTGCTAGAAATCAAAAGGGAAGCTTCAGCCATCGTCGAAAAACAGCAAACTTGGCATCTTCTTCTGAGGATTCAGGCAAGTCCTTTGTTAAATTGTTTGCTTACATGCTTAAACTTTGGCAAAATTAGGATTATTATTCTAAAGTTTCTTGACAAATTTTGTACAGGAGAGGACAGTCCCTCTGAACATGAATCTGTTGAGTCAGGTGATCTTGAGACGTCTCAAGAACCTTATGTATTATCTCGCAGGAGTTATCTATCTGAATTCCAAAAGGATAAAGTAGATGCACTTATCCAGGAGATTCAGCCTGAAACTACCGCGTTTGTAGCTATCATGAGAAAGTCCAATGTTCAATTGCCAACTCCTTTTTTGGTAATCTACTGTTACTTTCTGTTCAACTGACAACTCAATGCTTTGTTTATTGCTTGTTGAATACTGAACCAGTGTACTTGTGTTGTCAATATTTCAATTTTCATTCAAAGAACATGCTTTTAATATTATATGGTAAATTCAGTTTTGTGCTTACAATAATATGGGAATTTCAGTTTTGTTCAAGTTCTCAGGAGCATTCAGACCTTCTTTTAAATGCATTTTTAAAACATGATGGGCAGCATAATTTTTCTTTACTTCAACCTTGATTTTCTGTTCTTGATTAGTACTTGTTAATGATATCACACCCTGCCCTATCCTGTCATTAGGTCATTTCCTTTTGCTATGCTGAAGTACACTTTCCACATAAAAGCGTAACCGTGACACTTCAGAGGCCATGCAAAAGCAAGAAGTGGCATCCCAGATTCTACAAGAGAAAAGACGCGAGGATGAACATTCTCAGGGGATCTTGGGTAGAGTTTGTGAAAGACAATCGTGTGCAGGAACAGGACATCTGTGTCTTTGTACCAACTAAGGATGCAAGAAGAAATTTCACGTTTACGGTTCATCTGCTTCGCGTAGCGGCAGCTTATTCCCGGGGTGGAACTGGTGTTGATAGAGCCGGCTCAAGCCTTGGAAGAACAGATGTGAAGTCAGCTTCAGAGATCAGTATCAAGGAGGAACCAATTGATCAAGGTTACCATACAAAAAAAAACTTATATAGCTAGATTTCAAACAAACAAACAATATATCATATTGCTTTCTTATGACTATATGATGTGAGACTGTTGCAGAAGAAAATGTTTCCTCGAGAAACAGGAATGGAGTCTCTGACGAATCTGAGGAGGATGAGGATTCTGAAGGCCCTGCTCATCCTCCCTACATTGTACCATGCAAGAGCCGCCTGTCTCGGTTGCAAAAGAAGATAGTTGAAGAGAAAGTGCGATCCATCCAATCCAAATTTCCCGTTTATGTAGCAATCATGAAGAAGAGCAATGTTGAGCGAAGTGCTTCCCGTTGCCAGCTAGTAAGCTCTTTCCTTCTTCCGATCTTGAAATTTATATTACACAACACCGGGGTTCTTGTGTTTATTGTTAAGATCCGGTTTGCTGAAAATGGGGCAACATTTTCATCATGACGTCTCAACTATTAACAGTTGGTATCAGCAAACTATTTGGCCTGAACTTACAGTTTCTACTACCTCTGTCACAAAAATACTTTGTTTCCAGCTATGCCATTGGACAAGTACTCGTCCAGGCACATAGCCAGAAATCTAGTCTTTTTAGGACGGAGGTAGCAGTTACTTAACATTGCACGTTTATCATTGTAAAGTGTGAGCTTGTAACATTCATCATCTTTGTACTACTATGTGACAAAAAATACAGGAGCTAGGCGCGCGATTCGCCGCTGCTGTTCATCTTCCAGACAGGAGGCAGACCGTGGTGCTGCAGCGGAGGGGGGAGAGATGGGCCACCGTGATGCAGATCAGGAGCGGAACCAGGCGGCTCCTGATCAGCGGCTGGCACAGGTTCGTGCGCGACAACCGCCTGCGCGTCGGGGACATCTGCCTGTTTGAGTTCAAGACGCACGAGAGGTGGCGGCTCACCATGGCTGTCCATGCCATCTTCAGGGAGCAGTGCTGTTAG
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| CDS seq | MAGSGSCMKKSCVCCQKYLEHLDGKMNCFVRRMTADSRRSMIMPCKFVNHFGGDFSGTIKLQSPNGILYVVEVTKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRFEVLIFDSDDCEKVFSCAGIRNTCKSIQEKSSSSCDDTAESSESEGFARNQKGSFSHRRKTANLASSSEDSGKSFFLDKFCTGEDSPSEHESVESGDLETSQEPYVLSRRSYLSEFQKDKVDALIQEIQPETTAFVAIMRKSNVQLPTPFLVISFCYAEVHFPHKSVTVTLQRPCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDARRNFTFTVHLLRVAAAYSRGGTGVDRAGSSLGRTDVKSASEISIKEEPIDQEENVSSRNRNGVSDESEEDEDSEGPAHPPYIVPCKSRLSRLQKKIVEEKVRSIQSKFPVYVAIMKKSNVERSASRCQLELGARFAAAVHLPDRRQTVVLQRRGERWATVMQIRSGTRRLLISGWHRFVRDNRLRVGDICLFEFKTHERWRLTMAVHAIFREQCC
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| Protein seq | MAGSGSCMKKSCVCCQKYLEHLDGKMNCFVRRMTADSRRSMIMPCKFVNHFGGDFSGTIKLQSPNGILYVVEVTKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRFEVLIFDSDDCEKVFSCAGIRNTCKSIQEKSSSSCDDTAESSESEGFARNQKGSFSHRRKTANLASSSEDSGKSFFLDKFCTGEDSPSEHESVESGDLETSQEPYVLSRRSYLSEFQKDKVDALIQEIQPETTAFVAIMRKSNVQLPTPFLVISFCYAEVHFPHKSVTVTLQRPCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDARRNFTFTVHLLRVAAAYSRGGTGVDRAGSSLGRTDVKSASEISIKEEPIDQEENVSSRNRNGVSDESEEDEDSEGPAHPPYIVPCKSRLSRLQKKIVEEKVRSIQSKFPVYVAIMKKSNVERSASRCQLELGARFAAAVHLPDRRQTVVLQRRGERWATVMQIRSGTRRLLISGWHRFVRDNRLRVGDICLFEFKTHERWRLTMAVHAIFREQCC |
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| Function | B3 domain-containing protein Os03g0619600 [UniProtKB/Swiss-Prot:Q6AV22] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Oglab_008193 | Oglab_008193-RA | Chr03 | 23293612 | 23296323 | + | ensembl | ||
| CDS seq | ATGGCTGGAAGTGGTTCATGTATGAAGAAATCATGCGTTTGTTGCCAAAAATATTTGGAGCATTTGGATGGAAAGATGAACTGTTTCGTCAGGCGAATGACGGCCGATTCTAGACGTAGCATGATCATGCCATGTAAATTTGTGAACCATTTTGGAGGAGATTTCTCAGGGACCATAAAACTGCAATCCCCTAATGGTATTCTGTATGTTGTTGAAGTCACTAAGTGCAAGAATAAGACAGTCCTCAGATGTGGTTGGGAGGCATTTGTTGATGCCCATCACATAGAAGAGAATGACTCCTTGTTGTTCCGTCGCGTCGAGAATTCTCGTTTTGAGGTTCTGATCTTTGATTCCGATGATTGTGAGAAAGTATTTTCCTGTGCTGGCATAAGAAACACTTGTAAAAGTATTCAAGAAAAAAGTAGCAGCTCTTGTGATGATACTGCAGAATCATCAGAGAGTGAAGGATTTGCTAGAAATCAAAAGGGAAGCTTCAGCCATCGTCGAAAAACAGCAAACTTGGCATCTTCTTCTGAGGATTCAGGCAAGTCCTTTTTTCTTGACAAATTTTGTACAGGAGAGGACAGTCCCTCTGAACATGAATCTGTTGAGTCAGGTGATCTTGAGACGTCTCAAGAACCTTATGTATTATCTCGCAGGAGTTATCTATCTGAATTCCAAAAGGATAAAGTAGATGCACTTATCCAGGAGATTCAGCCTGAAACTACCGCGTTTGTAGCTATCATGAGAAAGTCCAATGTTCAATTGCCAACTCCTTTTTTGGTCATTTCCTTTTGCTATGCTGAAGTACACTTTCCACATAAAAGCGTAACCGTGACACTTCAGAGGCCATGCAAAAGCAAGAAGTGGCATCCCAGATTCTACAAGAGAAAAGACGCGAGGATGAACATTCTCAGGGGATCTTGGGTAGAGTTTGTGAAAGACAATCGTGTGCAGGAACAGGACATCTGTGTCTTTGTACCAACTAAGGATGCAAGAAGAAATTTCACGTTTACGGTTCATCTGCTTCGCGTAGCGGCAGCTTATTCCCGGGGTGGAACTGGTGTTGATAGAGCCGGCTCAAGCCTTGGAAGAACAGATGTGAAGTCAGCTTCAGAGATCAGTATCAAGGAGGAACCAATTGATCAAGAAGAAAATGTTTCCTCGAGAAACAGGAATGGAGTCTCTGACGAATCTGAGGAGGATGAGGATTCTGAAGGCCCTGCTCATCCTCCCTACATTGTACCATGCAAGAGCCGCCTGTCTCGGTTGCAAAAGAAGATAGTTGAAGAGAAAGTGCGATCCATCCAATCCAAATTTCCCGTTTATGTAGCAATCATGAAGAAGAGCAATGTTGAGCGAAGTGCTTCCCGTTGCCAGCTAGAGCTAGGCGCGCGATTCGCCGCTGCTGTTCATCTTCCAGACAGGAGGCAGACCGTGGTGCTGCAGCGGAGGGGGGAGAGATGGGCCACCGTGATGCAGATCAGGAGCGGAACCAGGCGGCTCCTGATCAGCGGCTGGCACAGGTTCGTGCGCGACAACCGCCTGCGCGTCGGGGACATCTGCCTGTTTGAGTTCAAGACGCACGAGAGGTGGCGGCTCACCATGGCTGTCCATGCCATCTTCAGGGAGCAGTGCTGTTAG
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| Protein seq | MAGSGSCMKKSCVCCQKYLEHLDGKMNCFVRRMTADSRRSMIMPCKFVNHFGGDFSGTIKLQSPNGILYVVEVTKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRFEVLIFDSDDCEKVFSCAGIRNTCKSIQEKSSSSCDDTAESSESEGFARNQKGSFSHRRKTANLASSSEDSGKSFFLDKFCTGEDSPSEHESVESGDLETSQEPYVLSRRSYLSEFQKDKVDALIQEIQPETTAFVAIMRKSNVQLPTPFLVISFCYAEVHFPHKSVTVTLQRPCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDARRNFTFTVHLLRVAAAYSRGGTGVDRAGSSLGRTDVKSASEISIKEEPIDQEENVSSRNRNGVSDESEEDEDSEGPAHPPYIVPCKSRLSRLQKKIVEEKVRSIQSKFPVYVAIMKKSNVERSASRCQLELGARFAAAVHLPDRRQTVVLQRRGERWATVMQIRSGTRRLLISGWHRFVRDNRLRVGDICLFEFKTHERWRLTMAVHAIFREQCC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0619600 | RBH | 1.149507 | 0.691894 | 0.653531 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42230 | RBH | 0.808113 | 0.465356 | 0.168232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0619600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026610 | SBH | 0.0 | 0.0 | 1.055874 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026350 | SBH | 0.0 | 0.0 | 0.573906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026410 | SBH | 0.0 | 0.0 | 0.356735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026200 | SBH | 0.324803 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0414000 | RBH | 0.036229 | 0.050142 | 0.030758 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0418700 | RBH | 0.07452 | 0.174806 | 0.767733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026250 | SBH | 0.025193 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026270 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026110 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026020 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026090 | RBH | 0.0 | 0.0 | 0.187105 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026040 | RBH | 0.0 | 0.0 | 0.408917 |
| Os XI: R9311 | R9311 | AGIS | R9311C03g12735 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0307500 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_03g0307300 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0288800 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_03g0314600 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0305189100.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0312472300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_008196 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0310631700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0311928700.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0305780100.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0305192500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0307523100.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0305777500.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0305822700.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0305153900.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0305169300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0311716900.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0305173300.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0305173900.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0305157700.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0305219700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0305202900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0305165100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0306571700.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0305961900.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0315097100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0307900300.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0305142300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0305159300.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0305218100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0305191700.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0308267900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0305222300.01 | RBH | None | None | None |
