Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g34092 | OGI:06023520 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:20603768-20605588 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCATCCCCATCGACTATTTGGCTAATGCCATCCAAAATTGTATAAGATCCTGAAAACTAAGGGGATTCGCCTTAATGAATTGTAGCCAGTCCTTCAAATCTTCTATGGGATCGAAGAAGAGTTCAAAATCATCATTCATGATCTTGTAGACTATATTCCTTATATTCTCCTCGTCCAGGGGACTCTTTAAGTTGATTTGTTCCCCTACTCTCCGGTAAAGCTCCTCAGAAATTGCTTTTAGGAAAGATGCGTGTTCGGCCGCATAAGCCAGATAAATTGAAGAAGAAGGGGCAGCCCCACCCCCTGTAGAGTTACTCGGGCCAGCCTCCCCTTGTAGCTGGGGTAGACTGGTAGTAGTTTCACCTATAAAATTTTGCATTTGTGGAATGTAGGTTGGAACTACCTGTTCCGGGATTGTAGAAAGGAAGGGCTCCACAGTTGAAACTACCTGTTCTGGCATTTCCGAAAGGAAAGGCAGGACAGCTAAAAATAATTCGCTGTCAGCCGCAGTATAGATACTTCGAGTTTTGGTAACTCTGGAAGTAGCGCTACAGATTGAAGTTTTTCTGCCCCCGATTATAAGTTCTCGTCGACCACGGCCTATAGGAACCAGGCTATCCACTGCTTTTAAGCCTGTTTGCATGGGTTCGTGCACAGATTTACGTTCCAGAATCCCTGTTTTCGTGACCGAATGACGAAATAGATATACGAACTGTATAGGATCATTCGCTGGGATGGGATAAGTGATTCTTTTATGGGATTCCCCTGGGATCGTGGAATCAACTAAGAATGCAATAGGTATTTGTGATCGAGCAGCTTCCAGTATGACCGAAGACTTTCTATCTGCATTCAGAATAACCGCACAATCGGGTTGTTGGTTCAACCCAAAATTTATCTTTTTCGTTCTTAAACGGAATTTTTTTTTTTTAGCCAAATAATTGCTAAAAAAAGTCCCGATCTTCCATTGAGAATCATTGATACAGCTCGCCATTTTTTCCAATATCTCACATCGAAATAAATGATTGGTCTTTAAAAGGAAGGAACGGCATTTTTTACGAATGGGAGATCCTATAAAATGAAGAGCGGTTCGTAAACAAATCAGTGTCTTGTCTGAATCGAGAATAGCAATTCCACTTCTGGAACCACAGATATAGACATTGAAATGGTGAGCATCTACCCGACGCCCGCCGAGATGTGCATTCGTACAAAGTAATTTAGTATAGACCATAGAAAGGATTGTCATTTCCGGTTTTCCGTTTCCCGAGATACTGGTGGTAAGTAATAATGCAGGCATGGCATATTTCGTTGAATCAGTCTTTTTCGCCACATCGCGTATAAAGGGAATCGAACCCAACTCTTCCACTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAAAGGAGACTGATCTTAACGTTGGCGTCGGTTTTTCCAAGAAAAGTTTGATTTGATTGGTCTTTTTCATGCGGAACGGAACCGTATTAGTAAGCGGGCCCACACCTTCTCCATCCCTCGATCAATAGTTTATTTCTCTTCTCTATCCCCTTTCTCGAACTGAGCTATTTCGAGCATTTCATAAACAGAGCTCGATAGTCCCTTAAAGTATTCACTTTTCCAGGAGCCGACTTACCAGTTAGTACTGGCACTTTTACAGGAACAGTACCAGAGACTCATCTCGTAAGAAGACATTTTCAATTAGACACTACTAGTCGAGGACACGCGACAAGTTACGTTCTCATTTCGCAGAGGTTCTTCTCGCGATCTTTCTATTCTATTCTTTATGGACCTGAGCTCACTTAATTGCTTTTTGAGGGGGCGCA
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| CDS seq | ATGAAAAAGACCAATCAAATCAAACTTTTCTTGGAAAAACCGACGCCAACGTTAAGATCAGTCTCCTTTCTTTTCGGCGGCATCCTTCCGCATTGGCGGCGAGTGGAAGAGTTGGGTTCGATTCCCTTTATACGCGATGTGGCGAAAAAGACTGATTCAACGAAATATGCCATGCCTGCATTATTACTTACCACCAGTATCTCGGGAAACGGAAAACCGGAAATGACAATCCTTTCTATGGTCTATACTAAATTACTTTGTACGAATGCACATCTCGGCGGGCGTCGGGTAGATGCTCACCATTTCAATGTCTATATCTGTGGTTCCAGAAGTGGAATTGCTATTCTCGATTCAGACAAGACACTGATTTGTTTACGAACCGCTCTTCATTTTATAGGATCTCCCATTCGTAAAAAATGCCGTTCCTTCCTTTTAAAGACCAATCATTTATTTCGATGTGAGATATTGGAAAAAATGGCGAGCTGTATCAATGATTCTCAATGGAAGATCGGGACTTTTTTTAGCAATTATTTGGCTAAAAAAAAAAAATTCCGTTTAAGAACGAAAAAGATAAATTTTGGGTTGAACCAACAACCCGATTGTGCGGTTATTCTGAATGCAGATAGAAAGTCTTCGGTCATACTGGAAGCTGCTCGATCACAAATACCTATTGCATTCTTAGTTGATTCCACGATCCCAGGGGAATCCCATAAAAGAATCACTTATCCCATCCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGGTCACGAAAACAGGGATTCTGGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCGACGAGAACTTATAATCGGGGGCAGAAAAACTTCAATCTGTAGCGCTACTTCCAGAGTTACCAAAACTCGAAGTATCTATACTGCGGCTGACAGCGAATTATTTTTAGCTGTCCTGCCTTTCCTTTCGGAAATGCCAGAACAGGTAGTTTCAACTGTGGAGCCCTTCCTTTCTACAATCCCGGAACAGGTAGTTCCAACCTACATTCCACAAATGCAAAATTTTATAGGTGAAACTACTACCAGTCTACCCCAGCTACAAGGGGAGGCTGGCCCGAGTAACTCTACAGGGGGTGGGGCTGCCCCTTCTTCTTCAATTTATCTGGCTTATGCGGCCGAACACGCATCTTTCCTAAAAGCAATTTCTGAGGAGCTTTACCGGAGAGTAGGGGAACAAATCAACTTAAAGAGTCCCCTGGACGAGGAGAATATAAGGAATATAGTCTACAAGATCATGAATGATGATTTTGAACTCTTCTTCGATCCCATAGAAGATTTGAAGGACTGGCTACAATTCATTAAGGCGAATCCCCTTAGTTTTCAGGATCTTATACAATTTTGGATGGCATTAGCCAAATAG
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| Protein seq | MKKTNQIKLFLEKPTPTLRSVSFLFGGILPHWRRVEELGSIPFIRDVAKKTDSTKYAMPALLLTTSISGNGKPEMTILSMVYTKLLCTNAHLGGRRVDAHHFNVYICGSRSGIAILDSDKTLICLRTALHFIGSPIRKKCRSFLLKTNHLFRCEILEKMASCINDSQWKIGTFFSNYLAKKKKFRLRTKKINFGLNQQPDCAVILNADRKSSVILEAARSQIPIAFLVDSTIPGESHKRITYPIPANDPIQFVYLFRHSVTKTGILERKSVHEPMQTGLKAVDSLVPIGRGRRELIIGGRKTSICSATSRVTKTRSIYTAADSELFLAVLPFLSEMPEQVVSTVEPFLSTIPEQVVPTYIPQMQNFIGETTTSLPQLQGEAGPSNSTGGGAAPSSSIYLAYAAEHASFLKAISEELYRRVGEQINLKSPLDEENIRNIVYKIMNDDFELFFDPIEDLKDWLQFIKANPLSFQDLIQFWMALAK |
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| Function | Ribosomal protein S2, mitochondrial [UniProtKB/Swiss-Prot:Q9GCB9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g34092 | LOC_Os12g34092.1 | Chr12 | 20603768 | 20605588 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAAAAGACCAATCAAATCAAACTTTTCTTGGAAAAACCGACGCCAACGTTAAGATCAGTCTCCTTTCTTTTCGGCGGCATCCTTCCGCATTGGCGGCGAGTGGAAGAGTTGGGTTCGATTCCCTTTATACGCGATGTGGCGAAAAAGACTGATTCAACGAAATATGCCATGCCTGCATTATTACTTACCACCAGTATCTCGGGAAACGGAAAACCGGAAATGACAATCCTTTCTATGGTCTATACTAAATTACTTTGTACGAATGCACATCTCGGCGGGCGTCGGGTAGATGCTCACCATTTCAATGTCTATATCTGTGGTTCCAGAAGTGGAATTGCTATTCTCGATTCAGACAAGACACTGATTTGTTTACGAACCGCTCTTCATTTTATAGGATCTCCCATTCGTAAAAAATGCCGTTCCTTCCTTTTAAAGACCAATCATTTATTTCGATGTGAGATATTGGAAAAAATGGCGAGCTGTATCAATGATTCTCAATGGAAGATCGGGACTTTTTTTAGCAATTATTTGGCTAAAAAAAAAAAATTCCGTTTAAGAACGAAAAAGATAAATTTTGGGTTGAACCAACAACCCGATTGTGCGGTTATTCTGAATGCAGATAGAAAGTCTTCGGTCATACTGGAAGCTGCTCGATCACAAATACCTATTGCATTCTTAGTTGATTCCACGATCCCAGGGGAATCCCATAAAAGAATCACTTATCCCATCCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGGTCACGAAAACAGGGATTCTGGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCGACGAGAACTTATAATCGGGGGCAGAAAAACTTCAATCTGTAGCGCTACTTCCAGAGTTACCAAAACTCGAAGTATCTATACTGCGGCTGACAGCGAATTATTTTTAGCTGTCCTGCCTTTCCTTTCGGAAATGCCAGAACAGGTAGTTTCAACTGTGGAGCCCTTCCTTTCTACAATCCCGGAACAGGTAGTTCCAACCTACATTCCACAAATGCAAAATTTTATAGGTGAAACTACTACCAGTCTACCCCAGCTACAAGGGGAGGCTGGCCCGAGTAACTCTACAGGGGGTGGGGCTGCCCCTTCTTCTTCAATTTATCTGGCTTATGCGGCCGAACACGCATCTTTCCTAAAAGCAATTTCTGAGGAGCTTTACCGGAGAGTAGGGGAACAAATCAACTTAAAGAGTCCCCTGGACGAGGAGAATATAAGGAATATAGTCTACAAGATCATGAATGATGATTTTGAACTCTTCTTCGATCCCATAGAAGATTTGAAGGACTGGCTACAATTCATTAAGGCGAATCCCCTTAGTTTTCAGGATCTTATACAATTTTGGATGGCATTAGCCAAATAG
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| Protein seq | MKKTNQIKLFLEKPTPTLRSVSFLFGGILPHWRRVEELGSIPFIRDVAKKTDSTKYAMPALLLTTSISGNGKPEMTILSMVYTKLLCTNAHLGGRRVDAHHFNVYICGSRSGIAILDSDKTLICLRTALHFIGSPIRKKCRSFLLKTNHLFRCEILEKMASCINDSQWKIGTFFSNYLAKKKKFRLRTKKINFGLNQQPDCAVILNADRKSSVILEAARSQIPIAFLVDSTIPGESHKRITYPIPANDPIQFVYLFRHSVTKTGILERKSVHEPMQTGLKAVDSLVPIGRGRRELIIGGRKTSICSATSRVTKTRSIYTAADSELFLAVLPFLSEMPEQVVSTVEPFLSTIPEQVVPTYIPQMQNFIGETTTSLPQLQGEAGPSNSTGGGAAPSSSIYLAYAAEHASFLKAISEELYRRVGEQINLKSPLDEENIRNIVYKIMNDDFELFFDPIEDLKDWLQFIKANPLSFQDLIQFWMALAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.484540 | 1.458396 | 4.311256 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33954 | RBH | 7.867353 | 8.955865 | 21.125450 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015840 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0139200 | SBH | 233.2459795 | 696.065216 | 402.898468 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010580 | RBH | 21.339249 | 29.233963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010450 | SBH | 3.881464 | 175.446686 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010460 | RBH | 252.811447 | 3151.609131 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010350 | RBH | 2.148714 | 84.677292 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
