Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g38272 | OGI:01056340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20479654-20481033 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAACTCTTCCATTCCATGGCCCCGAGAATGCTAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGGCTTGTTGGAAAACCCGTTGTCGGACCTGATTCATCGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCTAATTGTTCCAAACTAATAGAAGTGGCATTAATCAAATTTGCTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATTCGAGCTTTTTCGAGCTGCTCAATGGTTCCTCTACGCAATTCTTCCGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTACCTTGCTATTAAGTTTACAACTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCCCTTTTTTCTTTTTTTGCTATGGCTACTTCCATATTTTTTTTAATGTAATGAGCCTATCCTCTACCCTCTCTTTTCTGTTTATATTTCAATATACCGAAACCCATATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATCTATCGTGGGCAGCAAAGTTGTTTTTTTATTTGTATTTGCCCTTTAGTTAAAATTTTCAATTTCATTAAGAAAAACTAAATAGAAAAATGGAAAATGAAAATGGATAGAATTCCTACTTTTTTCTTCAAATCCAAAAACTTTCTCCTTTTTTATACATAGGTCGTCGATTCGGCATTGGATAAAAAAGGGCAGGGTGCCCCTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTCTACATTAGCTATTTCCTGTTTAAAGCATTTGGTACTAATACTAATATAGTTGTAGAAAGAGTACCCCCTTTTGCCTAGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCATATTATTGGTCTATAGAGAATCAAAGTTGATTTGATTTACCAATAGGTCGCGAAATGCTATGGTTCTTTCATATGATTTCTGCATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATTCGAAAAATACTAAAAAATATTCTAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAATAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTCCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCAT
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| CDS seq | ATGAAAAATGTAACCCATTCTTTCGTTTTTTTAGCTCACTGGCCATCCGCTGGGAGTTTCGGGCTTAATACCGATATTTTAGCAACAAATCTAATAAATCTAACTGTAGTGGTTGGTGTATTGATTTATTTTGGAAAGGGAGTGTTAAAAGATTTATTAGATAATCGAAAACAGAGGATCTTGAGTACTATTCGAAATTCGGAAGAATTGCGTAGAGGAACCATTGAGCAGCTCGAAAAAGCTCGAATTCGATTACAGAAAGTCGAACTAGAAGCGGATGAGTATCGAATGAATGGATACTCTGAGATAGAACGAGAAAAAGCAAATTTGATTAATGCCACTTCTATTAGTTTGGAACAATTAGAAAAGTCTAAAAACGAAACCCTTTATTTTGAAAAACAAAGGGCGATGAATCAGGTCCGACAACGGGTTTTCCAACAAGCCGTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAATACCGAGTTACATTTCCGTACGATTCGTGCTAATATTAGCATTCTCGGGGCCATGGAATGGAAGAGTTAA
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| Protein seq | MKNVTHSFVFLAHWPSAGSFGLNTDILATNLINLTVVVGVLIYFGKGVLKDLLDNRKQRILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAMEWKS |
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| Function | ATP synthase subunit b, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g38272 | LOC_Os10g38272.1 | Chr10 | 20479654 | 20481033 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAAAATGTAACCCATTCTTTCGTTTTTTTAGCTCACTGGCCATCCGCTGGGAGTTTCGGGCTTAATACCGATATTTTAGCAACAAATCTAATAAATCTAACTGTAGTGGTTGGTGTATTGATTTATTTTGGAAAGGGAGTGTTAAAAGATTTATTAGATAATCGAAAACAGAGGATCTTGAGTACTATTCGAAATTCGGAAGAATTGCGTAGAGGAACCATTGAGCAGCTCGAAAAAGCTCGAATTCGATTACAGAAAGTCGAACTAGAAGCGGATGAGTATCGAATGAATGGATACTCTGAGATAGAACGAGAAAAAGCAAATTTGATTAATGCCACTTCTATTAGTTTGGAACAATTAGAAAAGTCTAAAAACGAAACCCTTTATTTTGAAAAACAAAGGGCGATGAATCAGGTCCGACAACGGGTTTTCCAACAAGCCGTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAATACCGAGTTACATTTCCGTACGATTCGTGCTAATATTAGCATTCTCGGGGCCATGGAATGGAAGAGTTAA
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| Protein seq | MKNVTHSFVFLAHWPSAGSFGLNTDILATNLINLTVVVGVLIYFGKGVLKDLLDNRKQRILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAMEWKS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 345.488831 | 363.362885 | 66.831802 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16748 | SBH | 359.647064 | 267.345367 | 46.024559 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006060 | SBH | 977.347717 | 246.369232 | 1538.183105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018220 | SBH | 726.383789 | 85.930038 | 597.339661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013610 | SBH | 636.464111 | 107.635475 | 761.092834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013900 | SBH | 0.000000 | 0.001277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004670 | SBH | 31.388939 | 0.0 | 12.428169 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017790 | RBH | 286.852173 | 78.991211 | 447.335388 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004650 | SBH | 2354.627930 | 984.945374 | 3754.520264 |
