Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g38160 | OGI:10062680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20437920-20439182 | ||||||||
| Gene Symbol | GSTU22, OsGSTU22 | ||||||||||
| DNA seq | ATGGCCGGAGGAGGAGATGAGCTGAAGCTGCTGGGGATGTGGGCGAGCCCGTTCGCGCTGCGAGCGAAGCTCGCGCTCAGCTTCAAGGGCCTGAGCTACGACTACGTCGAGGAGGACTTCAAGAACAAGAGCGAGCTGCTCCTCAGCTCCAACCCGGTGCACAAGAAGGTTCCCGTGCTCATCCACAACGGCAAGCCCATCTGCGAGTCGCAGGTCATCGTACAGTACATCGACGAGGTGTTCCCCGACGCCGGCGTCACCCTCCTCCCCGCCGACCCCCACGATCGCGCCGTCGCTCGCTTCTGGGCCTCCTACATCGACGAAAAGGTTGTTACGATGATCATGTACTAGTAGAGTACTCTTCTGTTGATTATTACTCCCTTCGTATTTTAATGTATGACGCCGTTGACATTTTAACCAATGTTTGACCATTCGTTTTATTCAAATTTTTTATGCAAATAAAAAATACTTATGTCACGCTTAAAGAACATTTAATGATAAATCAAGTCACAATAAAATAAATGATAATTACATAAGTTTTTTGAATAAGACGAAAAGTCAAACGTTTGTTAAAAAGTCAACAGCGCCATACATTAAAATACAGAGGGAGTACTTGATTTTCTCTTGGCATTTGTGTGATTGATTGGTGTATACGTGTTCTGTGCGTTTGCAGCTGTTCGGTGCGTGGATTCCGGTGTTCAGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGGTGAAGCAAACGTTCGCGGTGGCGGAGAAACTGGAGGGAGCACTGAGCGAGTGCTGCAAGGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGCTACGTCGACGTCGTGCTCGGAGGCTTCGTCGCGTGGGTGCACGCCATCGAAGAGGTGTTCGGCCTGAACCAGTTCGACGCCGCCAAGACGCCGCTCCTGGCGGCGTGGTTGGAGCGCTTCGACGAGCTCGACGCCGCCAAGGAGGCCATGCCGGACATCGGCAGGCTGGTCGAGCTCGAGAAGATGAGGCAGGCACAGGCACAGGCGGCGGTATATTGAAGTTTGAGCGCAACTATATTTGATTATCGTGTGCTTTGATATTTTCGCAGTTTTTGGCTGTACGCCTGTACCTCTTATTGTTTCTGCAACCGTGTTTCATCAGTTCATGTTGCCGCACCGTGTATGTTTCTCCATGTGTCGCTGAAGTTGCCAACTGGGTATTCTACAACGTGTTACGTCCATATTGGTATGTTGATTAGTTTGGAGATGGATTTTTA
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| CDS seq | ATGGCCGGAGGAGGAGATGAGCTGAAGCTGCTGGGGATGTGGGCGAGCCCGTTCGCGCTGCGAGCGAAGCTCGCGCTCAGCTTCAAGGGCCTGAGCTACGACTACGTCGAGGAGGACTTCAAGAACAAGAGCGAGCTGCTCCTCAGCTCCAACCCGGTGCACAAGAAGGTTCCCGTGCTCATCCACAACGGCAAGCCCATCTGCGAGTCGCAGGTCATCGTACAGTACATCGACGAGGTGTTCCCCGACGCCGGCGTCACCCTCCTCCCCGCCGACCCCCACGATCGCGCCGTCGCTCGCTTCTGGGCCTCCTACATCGACGAAAAGCTGTTCGGTGCGTGGATTCCGGTGTTCAGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGGTGAAGCAAACGTTCGCGGTGGCGGAGAAACTGGAGGGAGCACTGAGCGAGTGCTGCAAGGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGCTACGTCGACGTCGTGCTCGGAGGCTTCGTCGCGTGGGTGCACGCCATCGAAGAGGTGTTCGGCCTGAACCAGTTCGACGCCGCCAAGACGCCGCTCCTGGCGGCGTGGTTGGAGCGCTTCGACGAGCTCGACGCCGCCAAGGAGGCCATGCCGGACATCGGCAGGCTGGTCGAGCTCGAGAAGATGAGGCAGGCACAGGCACAGGCGGCGGTATATTGA
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| Protein seq | MAGGGDELKLLGMWASPFALRAKLALSFKGLSYDYVEEDFKNKSELLLSSNPVHKKVPVLIHNGKPICESQVIVQYIDEVFPDAGVTLLPADPHDRAVARFWASYIDEKLFGAWIPVFRGKTEEEKAEGVKQTFAVAEKLEGALSECCKGKPFFGGDTVGYVDVVLGGFVAWVHAIEEVFGLNQFDAAKTPLLAAWLERFDELDAAKEAMPDIGRLVELEKMRQAQAQAAVY |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g38160 | LOC_Os10g38160.1 | Chr10 | 20437920 | 20439182 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGAGGAGGAGATGAGCTGAAGCTGCTGGGGATGTGGGCGAGCCCGTTCGCGCTGCGAGCGAAGCTCGCGCTCAGCTTCAAGGGCCTGAGCTACGACTACGTCGAGGAGGACTTCAAGAACAAGAGCGAGCTGCTCCTCAGCTCCAACCCGGTGCACAAGAAGGTTCCCGTGCTCATCCACAACGGCAAGCCCATCTGCGAGTCGCAGGTCATCGTACAGTACATCGACGAGGTGTTCCCCGACGCCGGCGTCACCCTCCTCCCCGCCGACCCCCACGATCGCGCCGTCGCTCGCTTCTGGGCCTCCTACATCGACGAAAAGCTGTTCGGTGCGTGGATTCCGGTGTTCAGAGGCAAGACGGAGGAGGAGAAGGCGGAGGGGGTGAAGCAAACGTTCGCGGTGGCGGAGAAACTGGAGGGAGCACTGAGCGAGTGCTGCAAGGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGCTACGTCGACGTCGTGCTCGGAGGCTTCGTCGCGTGGGTGCACGCCATCGAAGAGGTGTTCGGCCTGAACCAGTTCGACGCCGCCAAGACGCCGCTCCTGGCGGCGTGGTTGGAGCGCTTCGACGAGCTCGACGCCGCCAAGGAGGCCATGCCGGACATCGGCAGGCTGGTCGAGCTCGAGAAGATGAGGCAGGCACAGGCACAGGCGGCGGTATATTGA
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| Protein seq | MAGGGDELKLLGMWASPFALRAKLALSFKGLSYDYVEEDFKNKSELLLSSNPVHKKVPVLIHNGKPICESQVIVQYIDEVFPDAGVTLLPADPHDRAVARFWASYIDEKLFGAWIPVFRGKTEEEKAEGVKQTFAVAEKLEGALSECCKGKPFFGGDTVGYVDVVLGGFVAWVHAIEEVFGLNQFDAAKTPLLAAWLERFDELDAAKEAMPDIGRLVELEKMRQAQAQAAVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.856712 | 1.084209 | 0.303403 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0527400 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38340 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0527400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017880 | SBH | 0.0 | 3.343572 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018230 | SBH | 0.000000 | 4.369670 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017660 | SBH | 0.516216 | 8.552260 | 0.252772 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018260 | RBH | 0.248896 | 0.589044 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0017850 | SBH | 0.0 | 2.142120 | 1.816985 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0339500 | SBH | 0 | 2.479635 | 0.031769 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017910 | SBH | 0.0 | 0.0 | 0.030000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0363900 | SBH | 0.0152215 | 2.799602 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017540 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017370 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017590 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018080 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017890 | SBH | 1.660139 | 16.673845 | 4.585860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018030 | RBH | 0.0 | 0.0 | 0.0 |
