Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g41260 | OGI:07068650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:24724562-24728180 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAACCCTCACTCCCCCTTCGCGATCTCCTCCGCTCCAAAATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCCTCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCGGGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCGCCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCTCGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCGACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGCTCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGTTCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGCTCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGATCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGCTTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGGACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGAGGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCGATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATGCAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACTTGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGACATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCATCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGAAAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTAGGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGACTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGAAGGTAAAGAAGAGGCTGACTTTACCAGAGAAGATGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGAGCAGGCTTTGGGGTAATTTTCATACCCTTTCCTTCTCTTTTCGCTTTAAGCAATGCTCTATTTGCTCCAGTATTTGCTGCATGATAGTTCTGTGGTTTTGCTGGAGATTAGTCCATTTTGTTTTAGATGTTTTAACAGAAAGACGTACTGAAAACTAACTTGTTTCAAGAGAACCGATGTGCAGAAATGAAACTTTGCTTAGATCTAGTTCTCCGCTCCATTCCACTTAAGATGTGTTAAACACTATAAATATCCTCACAAATGTATAGAAGACGAGTTGTAGTGTAGAAATATCCAAAAAATGGAATGTTGCATTGTTGAATGTTGAATAGGCTTTTAGGTCTTAAGTTGACAAATTACACTTTCATCATCTAGGTGAGTATAAGTTTTGAAGCGAGGTACTTTGGCATGGACTAACTAACAAGGCAGGTTATTATGTTTGAGTGAGATTGCTCATTTCAAGCCAAAGTTAGTAATACTAGTAATCAGTACTTTAGGATGTTAACCTGGATTCTTATAGCTGATAAAAAAGTACTTCAGGAGATTAACCCTGGATTCTCATAGCTGATAAACTAGATGGAATCGCACTGATTAAAATTGTGGAATCATAGTTTTCCTTGTTTTGTTCTATTTTGTTGTCTGAGGTGTTCCGATGCTATCCTTAAAGTGGAAACTACAAAATTTAAAGCACATAGATACATTGATGCTTGATTTGTAACCACCGACTGCTACAATGCAAGATTAGTGATATTTGGTTTAGGGAAGGGTAGACGGTATAGAAACACTAGTCGTTATTTCTTCAATGCATTGAAGCTGTCACAGTCCATGCAGTTATAGAGATAATGTATTTTGCACATGTTTAAATTGCTTTGTGGTTAAAACCAGATACTACTAAGTAGCGAGTTAAGGTAAGTAGTTACAGCATACATGTAATGAAAAAAATACACTAGTATTACGTTCTGTATGGTGTGATATCATGAGATTACCCTTCCAAACTTTGCTTCTCACCGTCCAAACTAGTGTTTCTTGCTCTTAACTTCTTTTTTATTATTAGTATTCCTTAATAGTGACTATGCTTTGTTGGAATTTAACTTTAAAGATAACTCTCATTTTCTTTTGTTAAGTTGCAAATGCACAAAGCTTATGGATGACTATGCTCGATGGAAGCAGCAGTACCATGGGCCCAATTTTTAAAAAATAAGATATGCGGGATATCCACAACCGAATGGTGTGTTTTCCTTATAACAAGAGTTGCAGTTGTTCCTACAAATTTCTCCGTGTGTCGAAATCTATTGACCCCCTTACCCTTTTGTTACCTATTCAGATTGTTTAGTCAGCGTAGGAATGATGCTATAATCAAGTGGGCAACATTGACGTGTCCTGCTATCTGCCTTCCTATGTGTGCGCTAGAAGATAATGAATAAACAGTTTCTACCTGAAACCTCGTTTTGGCTTTTTATGCAATAGTTATGCCCACAAATGCAGCATGGATGATTGGGTGTACAGTTGCTCTCCCAGGACCATCTAGGTGTTCTCTGAATTTGTTATAATCTTCTTGTATGCAGTTTTGCATGCTTGCTGCTTTATCATCTGTGTAATTTTCCTTTCTGATGTATTACTAATGATTGTTCTAATTATCTTGTTTAGTTGGAGCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATTTTGAAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACATTACAAGTGGCTCACTGACCGCAACATTTTTCTGATCGGAGTCCTTCGTGTGGTTTCTATCTCTTGGACAATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCTGCAATGCCTTGTGTTTCATTAACACAAATAATGAATGTATCATTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGATGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACACTCTAGTTTCTCATGAACTCATGAAATATTTTATACATCGCCTGCCGAAACTACTCATTTGACCTTTTTCTTTGGGTGAGAATGTGCTCCCCAAAAGAGCTTGAATGCATGAGCTTGATCAA
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| CDS seq | ATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCCTCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCGGGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCGCCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCTCGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCGACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGCTCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGTTCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGCTCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGATCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGCTTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGGACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGAGGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCGATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATGCAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACTTGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGACATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCATCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGAAAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTAGGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGACTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGAAGGTAAAGAAGAGGCTGACTTTACCAGAGAAGATGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGA
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| Protein seq | MWRRHLLRRLLPSPATAAAAAASPSPAIRLLSTASPDPAPPATLASSLAGALSALSSTPPPATSPDAYFSLHFSDVRPTNALLAEALALAPPATSRAAAELFRFLVRRRSLHPSDSALAPVVRHLARRRDFPAVRSLVQEFPSALGHDTLDAYLLSLARAGRATDAVKVFDELPPQLRTRQALTSLVSSLSAEGWPSHAEGAVKKVANEIFPDDNICTLLVSGYANAGKLDHALRLIGETRRGGFQPGLDAYNAVLDCICRLCRKKDPLRMPAEAEKFLVDMEANGIPRDAGTFRVLITNLCKIRKTEDAMNLFRRMGEWGCSPDADTYLVLIKSLYQAARISEGDEMMTWMRSAGFGAKLDRKAYYGFIKILCGIERVEHAVKVFRMMKGYGHAPGTKSYSLLIEKLTRHNLGDRANALFREAVARGVTVTPGVYKIDKKYVKAKKEKKVKKRLTLPEKMRLKSKRLYKLRMSFVKKPKRRMVRV |
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| Function | Pentatricopeptide repeat-containing protein PNM1, mitochondrial [UniProtKB/Swiss-Prot:Q9FME4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g41260 | LOC_Os07g41260.1 | Chr07 | 24724562 | 24728180 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCCTCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCGGGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCGCCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCTCGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCGACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGCTCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGTTCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGCTCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGATCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGCTTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGGACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGAGGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCGATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATGCAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACTTGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGACATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCATCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGAAAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTAGGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGACTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGAAGGTAAAGAAGAGGCTGACTTTACCAGAGAAGATGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGA
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| Protein seq | MWRRHLLRRLLPSPATAAAAAASPSPAIRLLSTASPDPAPPATLASSLAGALSALSSTPPPATSPDAYFSLHFSDVRPTNALLAEALALAPPATSRAAAELFRFLVRRRSLHPSDSALAPVVRHLARRRDFPAVRSLVQEFPSALGHDTLDAYLLSLARAGRATDAVKVFDELPPQLRTRQALTSLVSSLSAEGWPSHAEGAVKKVANEIFPDDNICTLLVSGYANAGKLDHALRLIGETRRGGFQPGLDAYNAVLDCICRLCRKKDPLRMPAEAEKFLVDMEANGIPRDAGTFRVLITNLCKIRKTEDAMNLFRRMGEWGCSPDADTYLVLIKSLYQAARISEGDEMMTWMRSAGFGAKLDRKAYYGFIKILCGIERVEHAVKVFRMMKGYGHAPGTKSYSLLIEKLTRHNLGDRANALFREAVARGVTVTPGVYKIDKKYVKAKKEKKVKKRLTLPEKMRLKSKRLYKLRMSFVKKPKRRMVRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.103591 | 2.417624 | 1.190565 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0603900 | RBH | 1.707666 | 3.678289 | 4.795896 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0603900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022440 | RBH | 0.652704 | 8.778674 | 4.232491 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022470 | RBH | 0.132302 | 3.573785 | 2.220567 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022340 | RBH | 1.304736 | 14.397016 | 7.307187 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022270 | RBH | 0.143539 | 0.771926 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022420 | RBH | 7.680194 | 31.641438 | 18.643311 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0405600 | RBH | 5.6618855 | 7.209234 | 3.598485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022880 | RBH | 0.150164 | 0.856163 | 1.041668 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0417100 | RBH | 4.5922845 | 4.275456 | 11.287848 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022160 | RBH | 0.000000 | 0.190253 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022320 | RBH | 0.000000 | 28.257318 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022250 | RBH | 3.219972 | 17.227169 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022430 | RBH | 1.425427 | 1.972716 | 0.625835 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022150 | RBH | 0.242560 | 7.824850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022070 | RBH | 0.657010 | 15.887341 | 2.622467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022100 | RBH | 0.939197 | 9.139780 | 7.870773 |
