Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g53750 | OGI:04094300 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:32023858-32032485 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGATCGAGGGTACCTGCATCGCTCCTTTCTTTCTTTCATTCGAAGCTGGTTCTGTTCCTTACTTCTTCCTCTTAGTTCCTGTTTTTTGTGGAGACGGTACTTTCCCTAGTCGCATCATCCCGTATGCTTTGATCTTTTTCAGTTGTGCTTCGCTCTGGATTTCACCATTGTGATGTCGATGTTCTTCTGACCATGCCTATGCTCATTGATTTTGATTTTTGTTTTCTGCCTTCTAGGTTGCGCGGCCAACCCTTACCGAGACGTGGTTTTACTGCTCGCCGAGCCATCCGCGTTGCCCCCTTCCACTTCTCGGCATCCGCTCGTCGTCGTCCTCTCCGCATCCGCATCTCTTCCCAATTTGTTTGTTCCCCTTTATGTTCTTCACTGTGGCTGCACGTACAACAAGCTTGAATAGCATCACATACTCCCCATCCCGTCCTCAGCATCGGCGTGCCGCATGGCATCGCAGCGTCGCCTTCTTCTTCGGCATCAAGGTCGACTCGGTGGCTCACTGCTAGCACAGATGGCGGGCGGGGAGTGGATCTTTCAATTCTTCCTCAGCGACTTGCCCGACGGTGTTGCTAGCTGACACAACCATTTCCTCAATGGCAGAAATCGGCGTACGGTCTACCTGTCCTCCTCCGGTACGGTTTCCCTTCTCTTATCTCTCATCTAGCATAAATTGAAGATAATGTTCTGAATTTAGGCTAAATTTATCAGATGTTTGTTTGGGAAGTTCGTTCAAAGATTCAGATAGAACCCAGCACATTTCCGAATATTGGTGCCTCCAGATTTCTCTCTCTATTTCTTTTTTAAATGTTGCCTTCTGATAATTCGAACTCTGCGCCAATTCCTCTTATGGAAAGAGAGTCGATGTGATGTCATGAGGCAAAACATGAACTGGTGAGCTTCCCTGAAACCTGTTGATTCCCTGGCAACATTGATGTTTTATTAGGATGAATTCTCACATTAATAGCTTCCTTCCATTAGGGCTTTCAATGTTCTAAACTTTTTTTTAGAGAAATCATGTTCTAAACTTTTGATTGGTGAAAGAAGTTACAATTACTAAGGAGCTCTCATCCTCTCCTGCGAATGAGATTCTATTCATTTTTCTGTTCCTGTACTTTAAGCATGTCAGTATGCCACTACTTCATTGTCCAAAACTGAGCTCCAAAGAAAGGTCAAAGTGGCCAGCTTAGGATTAAAACAAGTTTAGCAGAATCTTCTTACACAAATTATTTGGTGTTTTTCAGCATACAGGTAAACAGACGGCTAGACTTCATGATACATGCTAATGTTGGGAGGGGCAAGCCACTATGCTCAGCTCATGGATCTTCAGGAACGGAGCTGCCAGCATATTACTGACAAACAAATACAAGGTAAATAGGCAGAAGAGATCCTTCATGTGCTTTGCTCTCCGATGTTCTCCGTAGAGAAAAGAAAAGTTAATCATTTCAATTATTTATTTTTATTCATTAATTATATGTAATTAGTAAATTGTTGTGTTGTATATGTGTTACCATTTTGACAAAAAAAAGAGCACTCCGATTGATCATTTTCTGAACCATACAGGAAAAATACTCCATGCTTTTGTATGAGCTGTTCTTAGTCTCTTATAGAATGTGCTGTGGTCTTAATCTCTGAAGGCTGAGCTGTGTTAGATTGGAGCACTCCGATCCAACTCTTTTGCCCACCAAATCAACTTACCAATGCCTGTTAGATAGATCTCTCTCCCCTTGAGCCCAACGGCTCAAGGGGGCCTTGACCGCGCCCTGATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCCCCGTCACACTGCGCCATATAAAAGAGGGGTGGAGGCCGGCACGGCACATGGTACGAGATTCACCGCCGACGCCAACTCCACCCTACAAACCCTAATCCGATCGAGAGGGGGCGCAGCCAGTGACGGGAAGCGCCACCGCCGCGCCAGACCTCATCGCCGGGACATCTACGACCGTCACTCCCGCAGCCGTCATCGCCGTCGACCTCACCGGCGCCGCATCCACGACAACCGAGCGCCAACGACGACGATGGCCGGCACTTCTTCATCCTCCAACACCTCAACCGGTCGGTCTATCTAAACCCTCTCCCGTTTTCAATCTCTATAGTTCAAACATCAAACCCAAATAGAACCACCCGACTAGATCTAACCTAGGTGATCCTAGTGCAAAGTTTAACAATGGTATCAGAGCAACCCTAGTGTTTAGATCGTTTCGGGGAAAGAAATCCAAAGAAAGAAAAGCACAAGATCCGCACGGATCAAAAGAACCAAAAACCCTAACCCTAATTCTTACCTCGTCGCCGGCCGTCGTTGACGCCGGCAACGGAGGGGGGGAGGGGCAAAGAGGCGCCGCCTAGGAGCCACTCGACGGCCGCGCGCGCACCTGCACGCGCGTGCCGGCGAGGGGGCCCGCGGCGGCGCCGCCATCTCCGTCGTCGCCATCTCTCTCTCACACGGTGGGGGTTAGAGACGGTGGGGGGAGCGGAGAAGAGAAAAGAAAGGAGCGCCGGCCATGGCGCGGCGGCGCGAAGGTCGCCGGCGATGGCGACGCCGTCCACGCGGTCGCGTGAGAGAGAGAAGAGAAGAGAAGCTAGGGTTTTCGGCGGCCGGCCGGGAGAGGGGGGTTTTTGATCCTCCGATCTCGGCGCCCGGCCGTCCGATCGAAACCCTAGCTGATCGGACGGCCGGCGGCGGCCGGACCGAAATCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAGGTTGCGGCCTGGGGGAGGGGAGGGGGCGCTTGCCCGCGCGCAAAGTGGCCATAGGCCGACCGGCAAAGGCCGGAAAAGTTCAATTTAGGTCCCTCGGGGCCGAAAATGAATAAAAGAGAACAGTAGCAATTTTTCCATTTTATTTTGTCGATTTTTCATGCAAATTTCAATAGAATTTTGAATAGATTTTTGCATGTTTTACCTCTGTTTAAATTTGAACCAACGGGAGAATTTTCACAGAGAGAGAATTACAGAGATTTTGCTACTGTTCATATGATTTTATATAGTCTTCCGCTGCAAATAGATGAAATTGATGAAAATTAGTGTTTCTAAAATTAAATTTCGAACCAACGGGAGAATTTAATTTTAGGAACATTAATTATGTGCTATGATGTTGTAATTTTCTGACCAACGTTGTTAATTGCAATATTATAGTTATGGTTATATGTGTTATGTCTAATTCTGCCCAACGGTGATGTAGGCTTAATGCATAATATTTTAATGTTAATTTTGTTCTCACCGCACATGATTATTTCAGGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTATTGACTACCCCATGTCCTATAGAACCTGCTGACCTTGTCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACAATGGAGGTGGTGTTAGAGACCACATACTTAGAATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAGATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAATGAATCTCATTATGTTGGTTACTCTAGATCCACATGGTGGATTGATTCTGGAGCAACTATTCATGCTTGTAATTGTTTAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAGAGTTGCCAATGGAGTTGAAGAAAAAGTTGAAGCTGTTGGAGATCTTCCTCTAGAGCTCGCGAATGGCTTCATACTTTTACTTCGAGATGTCTTTTATGTTCCTTCTTTGCAAAGAAACTTAATAAGTGTATCAAAGTTGGATTTTGATGGATATGATTGCCGCTTTGGAAGTGGCAAATGTGAACTATGGCATAATAATGCATGTATTGGTCTTGCTGTGTTGCGAGACGAGCTTTATTTGTTATCTCTTTCTGAGAATGTGAATGTTGTGTCCTCGTTGACAAAAGAAAACAAGAAAAGAAAGCGAACTCCCGATGTCTCATCGAAATTATGGCACTGTCGTTTGGGCCATATTTCGAGGGGGAGAATTGAGAGACTAGTTAAGAATGAAATTCTTCCTCCATTGGAGTTCTCAGACTTAGAACAATGCATAGAATGCATTAAAGGAAAATTTGTAAAGAGCATCAAAAAGGGTGCAAAACGAAGCGCAGGAATTTTAGAGATCATTCATACAGATATTTGTGGTCCATTTCCTGTGAAAAGTGTGGATGGCTATGACTCGTTCATAACATTCACAGATGATTACTCCCGCTATGGTTATATTTATCCAATTAAAGAGCGATCAGAAGCATTGGATAAATTTAAGATATTCAAAGCTGAAGTTGAAAATCAGCATGATATAAAGATTAAAGTAGTAAGATCTGACCGTGGGGGGGAGTACTATGGTCGACATACGCCTTATGGGCAAGTCCCTGGACCTTTTGCAAGGTTCTTGCTAGAGAATGGAATAGTAGCCCAGTATTCAACACCGGGCGAACCTCAACAGAATGGGGTAGCTGAAAGGCGCAACCGTACCCTTATGGATATGGTGCGCAGCATGATGAGCTACTCCACACTACCACTCGGTTTATGGATGGAGGCGTTAAAAACCGCCATTCATATTCTCAACAGAGTTCCAAGCAAATCGGTGCCCAAAACACCGTATGAGCTATGGACAGGAAGAGTACCCTCGCTAACTCACCTCCGTGTGTGGGGGAGTCCTGCAGAGGCCAAAGTATTTAACCCAAATATTGGGAAGTTGGACCCCAAAACAGTCAGTTGCCATTTTATTGGCTATCCTGAAAGATCAAAGGCTATCGTTTCTACTGTCCAAACAGTTATACAAAGTTTGTAGAAACGAGACACGCCGTCTTCTTGGAAGACGAAATGATTAGGGGGAGCTCGGTAGTTCGAGAAATTGATCTTGAGGAGAGGCGGGTGTCTGTACCCGCTCCGTCGACTCAGGAACCTTTCTTCTCTCTACCTGCTGATGTTGTGCCTGCAATGCCTGTCATTGAGGTACCAGCACCTGTTGTTACCCCTCCTGTGGCAACAATGAATGAGAGTGAGGAACCTGTTATACAGGATTCAACAGAAATGGTTGCCACGCCAGAGGAGGAGCTACAACAGCCTCAAATAGATAATGTGCCAGTACAGGAGACTCATCAAGAGCCTCAGGTACAGGATGTGCCAAATGTGCAGGCCCCTAGAAGGTCTGAAAGAGTCAGAAGATCGGCTATCCGTGATGACTATAAAGTTTATAATATAGAAGAGTCGCATATGGAGGATGATCCCACCTCATATGAAGAGGCCATGAGAAGCGCTCGCTCATCTGAATGGTTGGAAGCCATGAAAGATGAAATGGAATCAATGAAACTAAACGATGTTTGGGATTTAGAAGAAATTCCTAAAGGAGCCAAAACAGTAGGCTGTAAATGGGTCTACAAAACCAAATATGACTCCAGAGGGAATATAGAAAAGTTTAAAGCGCGACTTGTGGCAAAAGGCTTCACGCAACGAGAAGGGATTGATTACAATGAGACATTTTCTCCAGTCTCTTTAAAGATTCCTTCAGGATTATAATGGCACTAGTGGCACATTATGATTTGGAATTACATCAGATGGATGTAAAAACGGCATTTCTAAATGGAGATTTGGAGGAAAAAGTATACATGGCGCAACCAAAAGGTTTTGTCATGAAAGGAAACGAAAATATGGGATGTCGTCTAAAGAGATCCATTTATGGATTAAAGCAAGCTTCGAGACAGTGGTACTTGAAGTTTGATGGGACAATAAAGAAATTTGGGTTTCAAGAGAATGTCGAGGACAACTGTATTTATTCAAAGTTTAAGAATGGGAGATTTATTTTCCTAATTCTGTATGTGGATGACATTCTACTGGCTAGTAGTGATGTCAGTCTACTGCAGGAAACAAAGAAATTCTTGTCCTCAAACTTTGACATGAAAGACCTCGGTGAGGCTTCATATGTTTTGGGCATAGAGATTCACCGAGATAGAACAAAGTATGCATTGGGACTTTCTCAAAAGACATATATAGAAAAGGTGTTGAAGAAATTCAACATGTACAGATGCAGTGCTACACCTGCTCCTATAATGAAAGGCGAAAAGTATGGGGCATCGCAATGTCCCAGAAATCAGTATGAGCTCAATGAAATGAAAACAAAGCCATATGCGTCAGCTGTAGGAAGCCTACAGTACGCGCAAGTGTGCACACGACCTGACTTGGCATTTGTTACCGGGTTACTTGGCAGATTTCAGAGTAATCCAGGCCTAGAGCACTGGAAATTGGTAAAGAAAGTCTTGCGTTATTTGCAAGGAACAAAAGGCCTCATGCTGTCTTACAGAAGATCAGAATCCCTCCAGATAGTGGGGTACTCAGATTCTGACTTTGCAAAAGATAATACAAAGTCAACATCGGGATACGTGTTTACCCTGGCAGGAGGAGCTATTTCATGGAAAAGCTCAAAACAGACTATCACTGCAGGGTCTACTATGTATGCCGAGTTTATAGCATGCTATGAGGCAACGGGGCAGGTGAACTGGCTAAAGAAGTTCATACCCGGTTTAAAGGTGGTTGACAGTATTGAGAAACCACTAAAGTTATACTGCGACAACGAACCCGCAGTAATGTACACTCACAACAATCAGTCAAGTGGTGCTTGCCAAACACATTGACATAAAGTACTATGTTGTGAAGGACAAAGTCCGGGATCAAACAATCAGTCTCGAGCACATTAAAACAGAAAGGATGCTCGCGGATCCGCTCACGAAAGGCCTACCACCCAACGTGTTCAAGGAACATGTAGCCGGCATGGGTTTAAGGGAAGCCTTATGAATCCTGGACTACAGGGCCCAAAAGTAAAGTATCTGTTTCTGAATAGAGATGTGTATAGTGGCTGTCGAATCCATCGGCGATTGACCGTGACGATGAAACATGCTCTATTTACAAATCTGTGATGGAATAGAAAAAGCTAAAAGAAAAAGTGAGATCAAGGGGGAGAATGTTAGATAGATCTCTCTCCCCTTGAGCCCAACGGCTCAAGAGGGCCTTGACCGCGCCCTGATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCCCCGTCACACTGCGCCATATAAAAGAGGGGTGGAGGCCGGCACGGCACATGGTACGAGATTCACCGCCGCCGCCAACTCCACCCTACAAACCCTAATCCGATCGAGAGGGGGCGCAGCCAGTGACGGGAAGCGCCACCGCCGCGCCAGACCTCATCGCCGGGACATCTACGACCGTCACTCCCGCAGCCGTCATCGCCGTCGACCTCACCGGCGCCGCATCCACGACAACCGAGCGCCAACGACGACGATGGCCGGCACTTCTTCATCCTCCAACACCTCAACCGGTCGGTCTATCTAAACCCTCTCCCGTTTTCAATCTCTATAGTTCAAACATCAAACCCAAATAGAACCACCCGACTAGATCTAACCTAGGTGATCCTAGTGCAAAGTTTAACAATGCCAAGCCAATTGAGTGCAGCAAAGCACAAACAATATGGTCTTTATAGCCTGTGCAGATATAGCTCTTCCATTGGTGTGTTCTGCCACCACATCACTTCCAAAGTTGTTTCCAAGCTAAAAATCATGCTGCAGTGGTGGTTCAATCCCACACTTGAATAATTGGTGTTTCCTGCACTGATGTAGTAGTGACTGCCTTTTCTCACTTGCATAATTGATGTACTTCGCTCACTTTTTTATCTTAACATATTTCATAATATCATATAGATTCTCCTCAAGGACTGCGACAAGATTGAAGCTCATGCTTAGCAGGAAAACCATTTTTTTTTTACGGAAAGCAGGAAAACCATTTGAAATACCTATGGAAATATCCCTACACATGTGTTAACCATGATGATCTTTTTCTTTTCGAAATACTGTAAGGCAGGTATATCCATCATCTTTGTCATCTACAACTGCCTTAGCTATAC
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| CDS seq | ATGCTAATGTTGGGAGGGGCAAGCCACTATGCTCAGCTCATGGATCTTCAGGAACGGAGCTGCCAGCATATTACTGACAAACAAATACAAGGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTATTGACTACCCCATGTCCTATAGAACCTGCTGACCTTGTCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACAATGGAGGTGGTGTTAGAGACCACATACTTAGAATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAGATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAG
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| Protein seq | MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKGIPFDEDYAKKRKHH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53750 | LOC_Os04g53750.1 | Chr04 | 32023863 | 32028419 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTAATGTTGGGAGGGGCAAGCCACTATGCTCAGCTCATGGATCTTCAGGAACGGAGCTGCCAGCATATTACTGACAAACAAATACAAGGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTATTGACTACCCCATGTCCTATAGAACCTGCTGACCTTGTCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACAATGGAGGTGGTGTTAGAGACCACATACTTAGAATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAGATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAG
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| Protein seq | MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKGIPFDEDYAKKRKHH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53750 | LOC_Os04g53750.3 | Chr04 | 32023858 | 32028419 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTAATGTTGGGAGGGGCAAGCCACTATGCTCAGCTCATGGATCTTCAGGAACGGAGCTGCCAGCATATTACTGACAAACAAATACAAGGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTATTGACTACCCCATGTCCTATAGAACCTGCTGACCTTGTCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACAATGGAGGTGGTGTTAGAGACCACATACTTAGAATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAGATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAG
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| Protein seq | MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKGIPFDEDYAKKRKHH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53750 | LOC_Os04g53750.4 | Chr04 | 32023863 | 32032485 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTAATGTTGGGAGGGGCAAGCCACTATGCTCAGCTCATGGATCTTCAGGAACGGAGCTGCCAGCATATTACTGACAAACAAATACAAGGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTATTGACTACCCCATGTCCTATAGAACCTGCTGACCTTGTCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACAATGGAGGTGGTGTTAGAGACCACATACTTAGAATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAGATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGATTCTCCTCAAGGACTGCGACAAGATTGA
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| Protein seq | MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKDSPQGLRQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.144128 | 0.369849 | 0.253773 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0629600 | RBH | 0.412557 | 0.504873 | 2.110850 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36590 | SBH | 0.129367 | 0.143526 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0629600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0505400 | SBH | 0.2397735 | 1.038261 | 10.781027 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026850 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0285700 | SBH | 0.03151 | 0.5483625 | 0.2872625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
