Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g53640 | OGI:04094160 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:31970841-31972819 | ||||||||
| Gene Symbol | prx56 | ||||||||||
| DNA seq | AACAATCATAGAAGGCAACTCTTTCATCATAGGCAGTGGTTCCACAGTAGTCATGCACAACATGCCTTACAGACTCCTCTTCGGATTTGTCCTTTCTCTTGTCCTACAGTTCTCCTTAGTATTATCCAATCCACCAGGGCTAAACATTGGCTTTTACCAATACACATGTCCAAAAGCAGAGGTCATTGTTCGTGATGAGATGACCAAGATCATATCCCGAGTTCCAAGTCTCGCAGGCCCTCTACTTCGCATGCATTTCCATGATTGTTTTGTGAATGTATGCATACTGCTTACCATGCTCTGAGCTGTTTTGATTTTGAATTGAGTTTATCCTACTAAGCTATGTGCCTCTATGTGTTTTGCAGGGTTGCGATGGCTCTATACTTCTGGATAGCACACCAGGATCACCATCTGAGAAGGAATCAATACCAAACCTCAGTCTGCGAGGTTTTGGCACAATAGACCGTGTCAAAGCTAAGCTGGAGCAAGCCTGCCCTGGAGTTGTGTCCTGTGCTGATATCCTTGCTCTGGTAGCCAGAGATGTTGTCTTCTTGGTAAGAACTAGCTTCCATGTTCATTAATCTTAGTTCATTCTTTAGTTAGAAAAGTTAGTATAGTTTGGCTAAGTGGTGAGAATTGGCTGTTTTAGGCCGACAATAGTGGAAAACCACACAGTTTGATTTTCACCATATTCTACGTGGCTATTGGATTTCTTGCTGCTTACAGTAACTAGAACTATAGTTGAGAAAAGTCCCTATTCTTCCCTTGTGCAACAGACCAAAGGGCCTCACTGGGAAGTTCCAACTGGGCGGAGGGATGGGACAAGATCAGTGAAGGATGATGCTGTGAACAACCTCCCTCCCCCCTTCTTCGATGCCACGCGGAACTTGTATCAATTCTTCATCCCAAAGGGCCTTGACGCAAAGGATCAGGTGGTTCTGCTAGGTATATACTATTCTTCACTAACTTCAATGTTTAATCTTCATAGACTAGCTCCCTAGATGATTTATACTGTACTTACTGAAAGTTGCAACTCTCGGTTCTGTTGCCTGTGCTCCTTTTAAACACTCTGCTGATCCCGATATATCCCAGTAGCATTCTCCAATAAAGGTGATCACTTATTTAATTACTATACAACTTGTTAATAAAGGAAGGTATCATATGCGCATACCAAGTCAACAAAATGGGAAGTACAAAACTATGTGGTTCTTAGTTCTAATCACATGGCACAGTACAGAACCAAGCCAGGAGACCAAGACCACTTTATCCTCAAACACAGCATAGCTCTTTATTCGAGTGGTCAAAACATCGTTTCCTGTTCAGCACCATACTCATTTGTGCACTTGCAAAATTCATGGTTTTAAATAGCGGGTTAAGATATTTAGCGATTGACCTTCTCAAACAGCTATAGCGAACTTAATGGAGCTATAGTGGCTAAGACTCTTCTCAAACAGCTATAGCCAGAGATTCAAAACCATGGCAAAATTGCAATCCAAACTTGTTTAATTACCAAGAACTCATCACAAATGTGCATATGCAATTTGAGAAGTGACACATTGTTCACAGGTGGGCACACTCTTGGAACCTCCCATTGTTCATCCTTCGCCAGCCGGCTGTACAACTTCAGCGGCATGATGATGGCCGACCCGACGCTGGACAAGTACTACGTGCCGAGGCTGAAGAGCAAGTGCCAGCCCGGCGACAAGACGACGCTGGTGGAGATGGACCCGGGGAGCTTCAGGACGTTCGACACCAGCTACTACAGGCACATCGCCAGGGGCAGGGCGCTCTTCACCTCCGACGAGACGCTCATGCTCGACCCTTTCACCAGGGGCTACATCCTCCGCCAGGCCGGCGTCGCCGGCTACCCGGCGGAGTTCTTCGCCGACTTCGCGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCCCAGGGGGAGATCAGGAAGCACTGTGCCTTTGTGAATTAG
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| CDS seq | ATGCACAACATGCCTTACAGACTCCTCTTCGGATTTGTCCTTTCTCTTGTCCTACAGTTCTCCTTAGTATTATCCAATCCACCAGGGCTAAACATTGGCTTTTACCAATACACATGTCCAAAAGCAGAGGTCATTGTTCGTGATGAGATGACCAAGATCATATCCCGAGTTCCAAGTCTCGCAGGCCCTCTACTTCGCATGCATTTCCATGATTGTTTTGTGAATGGTTGCGATGGCTCTATACTTCTGGATAGCACACCAGGATCACCATCTGAGAAGGAATCAATACCAAACCTCAGTCTGCGAGGTTTTGGCACAATAGACCGTGTCAAAGCTAAGCTGGAGCAAGCCTGCCCTGGAGTTGTGTCCTGTGCTGATATCCTTGCTCTGGTAGCCAGAGATGTTGTCTTCTTGACCAAAGGGCCTCACTGGGAAGTTCCAACTGGGCGGAGGGATGGGACAAGATCAGTGAAGGATGATGCTGTGAACAACCTCCCTCCCCCCTTCTTCGATGCCACGCGGAACTTGTATCAATTCTTCATCCCAAAGGGCCTTGACGCAAAGGATCAGGTGGTTCTGCTAGGTGGGCACACTCTTGGAACCTCCCATTGTTCATCCTTCGCCAGCCGGCTGTACAACTTCAGCGGCATGATGATGGCCGACCCGACGCTGGACAAGTACTACGTGCCGAGGCTGAAGAGCAAGTGCCAGCCCGGCGACAAGACGACGCTGGTGGAGATGGACCCGGGGAGCTTCAGGACGTTCGACACCAGCTACTACAGGCACATCGCCAGGGGCAGGGCGCTCTTCACCTCCGACGAGACGCTCATGCTCGACCCTTTCACCAGGGGCTACATCCTCCGCCAGGCCGGCGTCGCCGGCTACCCGGCGGAGTTCTTCGCCGACTTCGCGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCCCAGGGGGAGATCAGGAAGCACTGTGCCTTTGTGAATTAG
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| Protein seq | MHNMPYRLLFGFVLSLVLQFSLVLSNPPGLNIGFYQYTCPKAEVIVRDEMTKIISRVPSLAGPLLRMHFHDCFVNGCDGSILLDSTPGSPSEKESIPNLSLRGFGTIDRVKAKLEQACPGVVSCADILALVARDVVFLTKGPHWEVPTGRRDGTRSVKDDAVNNLPPPFFDATRNLYQFFIPKGLDAKDQVVLLGGHTLGTSHCSSFASRLYNFSGMMMADPTLDKYYVPRLKSKCQPGDKTTLVEMDPGSFRTFDTSYYRHIARGRALFTSDETLMLDPFTRGYILRQAGVAGYPAEFFADFAASMVKMGNMQVLTGAQGEIRKHCAFVN |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:P37834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53640 | LOC_Os04g53640.1 | Chr04 | 31970841 | 31972819 | + | MSU_osa1r7 | ||
| CDS seq | ATGCACAACATGCCTTACAGACTCCTCTTCGGATTTGTCCTTTCTCTTGTCCTACAGTTCTCCTTAGTATTATCCAATCCACCAGGGCTAAACATTGGCTTTTACCAATACACATGTCCAAAAGCAGAGGTCATTGTTCGTGATGAGATGACCAAGATCATATCCCGAGTTCCAAGTCTCGCAGGCCCTCTACTTCGCATGCATTTCCATGATTGTTTTGTGAATGGTTGCGATGGCTCTATACTTCTGGATAGCACACCAGGATCACCATCTGAGAAGGAATCAATACCAAACCTCAGTCTGCGAGGTTTTGGCACAATAGACCGTGTCAAAGCTAAGCTGGAGCAAGCCTGCCCTGGAGTTGTGTCCTGTGCTGATATCCTTGCTCTGGTAGCCAGAGATGTTGTCTTCTTGACCAAAGGGCCTCACTGGGAAGTTCCAACTGGGCGGAGGGATGGGACAAGATCAGTGAAGGATGATGCTGTGAACAACCTCCCTCCCCCCTTCTTCGATGCCACGCGGAACTTGTATCAATTCTTCATCCCAAAGGGCCTTGACGCAAAGGATCAGGTGGTTCTGCTAGGTGGGCACACTCTTGGAACCTCCCATTGTTCATCCTTCGCCAGCCGGCTGTACAACTTCAGCGGCATGATGATGGCCGACCCGACGCTGGACAAGTACTACGTGCCGAGGCTGAAGAGCAAGTGCCAGCCCGGCGACAAGACGACGCTGGTGGAGATGGACCCGGGGAGCTTCAGGACGTTCGACACCAGCTACTACAGGCACATCGCCAGGGGCAGGGCGCTCTTCACCTCCGACGAGACGCTCATGCTCGACCCTTTCACCAGGGGCTACATCCTCCGCCAGGCCGGCGTCGCCGGCTACCCGGCGGAGTTCTTCGCCGACTTCGCGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCCCAGGGGGAGATCAGGAAGCACTGTGCCTTTGTGAATTAG
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| Protein seq | MHNMPYRLLFGFVLSLVLQFSLVLSNPPGLNIGFYQYTCPKAEVIVRDEMTKIISRVPSLAGPLLRMHFHDCFVNGCDGSILLDSTPGSPSEKESIPNLSLRGFGTIDRVKAKLEQACPGVVSCADILALVARDVVFLTKGPHWEVPTGRRDGTRSVKDDAVNNLPPPFFDATRNLYQFFIPKGLDAKDQVVLLGGHTLGTSHCSSFASRLYNFSGMMMADPTLDKYYVPRLKSKCQPGDKTTLVEMDPGSFRTFDTSYYRHIARGRALFTSDETLMLDPFTRGYILRQAGVAGYPAEFFADFAASMVKMGNMQVLTGAQGEIRKHCAFVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.472622 | 0.640082 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0651000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0651000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013330 | SBH | 0.0 | 13.524829 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028320 | RBH | 0.0 | 2.155986 | 0.511694 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028030 | RBH | 0.000000 | 2.685291 | 2.655260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027810 | RBH | 0.0 | 0.208416 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028050 | RBH | 0.257029 | 3.577488 | 2.603250 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0523200 | SBH | 0.063114 | 5.086837 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026750 | RBH | 0.077591 | 1.273490 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0508300 | RBH | 0.720227 | 1.53749 | 6.414073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027150 | RBH | 0.0 | 0.194882 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013010 | SBH | 0.0 | 30.829306 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013020 | SBH | 1.671914 | 188.232285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027570 | RBH | 0.000000 | 0.191441 | 0.184610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027660 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026950 | RBH | 0.0 | 2.364444 | 0.365304 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026870 | RBH | 0.0 | 7.526243 | 1.258884 |
