Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16830 | OGI:04043860 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9190922-9195969 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGGCGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACTTCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTGTATGGGAAATACTTCAAGAAGTTATGAGGGGACATCCTGTACTGTTGAATAGAGCACCTACCCTGCATAGATTAGGCATACAGGCTTTCCAACCCACTTTAGTAGAGGGGCGTACTATTTGTTTACACCCATTAGTGTGTAAAGGTTTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTATCTCCCGCTATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTATGTATTAACGATTGGAAACCGTCGAGGTATTTGTGCAAATAGATATAATAGTTGCGGAAACTATCCAAACCAAAAAGTAAATTACAATAATAATAATCCTAAGTATACGAAAGATAAAGAATCTCTTTTTTCTAGTTCCTATGATGCACTGGGAGCTTATAGACAGAAACAAATCTGTTTAGACAGTCCCTTGTGGCTCCGATGGAAACTAGATCAACGCGTCATTGGGTTAAGAGAAGTTCCGATTGAAGTTCAATATGAATCTTTGGGGACTTATCGTGAGATTTATGCCCACTATCTAGTAGTGGGAAATAGAAAAAAGGAAATCCGTTCTATATACATTCGCACCACTCTTGGTCATATTTCTTTTTATAGAGAAATAGAGGAAGCCATACAAGGATTTAGTCAGGCCTATTCATACACTATCTAAACAAGGAAGTTAGATTCGGGGATGCCCCTTTCGAGGGGCATTCCAATTTCGCTAGTATCATCATTTTTGCCGCACGAATCCAGATTGAGATTGAGGAAAGGAAGTTAACTAAGTTTTCGAATCACTGACTCAGGCCCATTGTCGAATCCTACTCAGCAATTGTCGAATTATACTCAGCCGAAAAAGGGGGTACTTATTTATGGCGGAACGGGCCAATCTGGTCTTTCAGAATAAAGAGATAGATGGAACTGCTATGAAACGACTTATTAGCAGATTAATAGATCATTTCGGAATGGGATATACATCCCATATACTGGATCAAATAAAAACGCTGGGCTTCCATCAAGCCACTACTACATCGATTTCATTAGGAATCGAGGATCTTTTAACAATACCCTCTAAGGGATGGTTAGTCCAAGATGCGGAACAACAGAGTTTTCTTTTGGAAAAACACTATTATTATGGGGCTGTACACGCGGTAGAAAAATTACGCCAATCCGTTGAAATCTGGTATGCTACAAGTGAATATTTGAAACACGAAATGAATTCGAATTTTCGGATAACAGATCCTTCTAATCCAGTCTATCTAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGTGGTACTATCCAAGCTATTTCTGTGAGTCCTCAAAATGGGATGACGGAAAAACTTTTTGTACAAACATTAATTGGTCGTGTATTAGCAAACGATATATATATCGGTTCACGGTGCATTGCCACTCGAAATCAAGATATTGGAATTGGGTTAGTCAATCGATTCATAACCACCTTTCGAGCACAGCCATTTCGAGCACAACCAATATATATTAGAACCCCCTTTACTTGCCGGAGCACATCTTGGATCTGTCAATTATGTTATGGTCGGAGTTCCACTCATGGCGATCTGGTCGAATTGGGGGAAGCTGTAGGTGTTATTGCGGGTCAATCTATTGGGGAGCCAGGGACTCAACTAACATTAAGAACTTTTCATACTGGTGGGGTATTCACAGGGGGTACTGCCGACCTTGTACGATCCCCTTCAAATGGAAAAATCCAATTCAATGGGGATTTGGTTCACCCCACACGTACCCGTCATGGGCAGCCTGCTTTTCTATGTTATATAGACTTGCATATAACTATTCAGAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAGGTACAAAAACATATTTATTCCGAATCAGATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTAAGTATGTGCAGATCTAGTATAGCTTCTTTTTCGCTCCACAAGGATCAAGATCAAATGAATACTTATTCCTTTTCTGTTGACGGAAGGTATATCTTTGGCCTCTCGATGGCTGATGATGAGGTAAGACATAGACTGTTGGATACTTTTGGTAAAAAAGATAGGGAAATTCTTGATTATTCAACGCCGGATCGAATCATGTCCAATGGTCATTGGAATTTTGTCTATCCTTCTATTCTTCAAAATAATTTTGATTTGTTAGCGAAAAAGCGAAGAAATAGGTTCGCCATTCCATTACAGTATCATCAAGAACAAGAGAAAGAACCAATATCCTGTTTTGGGATTTCGATTGAAATACCCTTTATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCACGATACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACCCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAATATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTTCCTGAAGAGGCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGAGAAAAAAAAGATTCGAAGGAATCAAAAAAAAGGGAAAATTGGGTCTATGTTCAGTGGAAAAAAATTCTCAAGAGCAAGGAAAAGTATTTTGTTTTGGTTCGACCTGCAGTCGCGTATGAAATGAACGAAGGGAGAAATTTAGCAACACTTTTCCCACAGGATCTCTTGCAGGAAGAGGGTAATCTCCAACTTCGACTTGTCAATTTTATTTCTCATGAAAATAGCAAGTTAACTCAAAGAATTTATCATACGAATAGTCAATTCGTTCGAACTTGCTTAGTATTGAATTGGGAACAAGAAGAAAAAGAGGAGGCTCGTGCTTCCCTTGTTGAGATAAGAGCAAATGGTCTGATTCGCGATTTCCTAAGAATTGGGTTAATCAAATCCACTATTTCGTATACACGAAAAAGGTATGATAGCAGAAGTGCAGGACTGATTCTCCATAATAGGTTAGATCGCACCAATACCAATTCCTTTTATTCCAAGGCGAAGATTCAATCACTTAGCCAACATCAAGAAGCTATTGGTACCTTGTTGAATCGAAATAAAGAATACCAATCTTTGATGGTTTTGTCGGCATCCAACTGTTCTCGAATTGGTTTTTTTAAGAATTCAAAAAATCCCAATGGGGTAAAAGAATCGAATCCTAGAATTCCTATTCCAAAATTTTTGGGGCTCTTTCGAAATTTTTCGGGACTCTTAGGTACTATTGCACCTAGTATATCGAATTTTTCTTCATCTTACTATTTACTAACGTATAATCAGATCCTGTTAAAAAAGCATTTGCTCCTTGACAATTTGAAACAAAACTTCAAAGTACTTCAAGGACTTAAACACTCTTTAATAAATGAAAATCAAAGGACTTCAAATTTCGATAGTAACATCATGTTGGATCCATTCCAGTTAAATTGGCACTTTCTCCCTCATGATTCTTGGGAAGAGACATCAGCAAAAATTCACCTTGGACAATTTATTTGCGAAAATGTATGTCTATTTAAATCGCACATAAAAAAATCAGGTCAAATTTTCATTGTAAATATAGATTCCTTTGTTATAAGAGCAGCTAAGCCTTATTTGGCCACTACAGGAGCAACTGTTCATGGTCATTATGGGGAAATCCTTTACAAAGGGGATAGGTTAG
More
|
||||||||||
| CDS seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTATCTCCCGCTATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTATGTATTAACGATTGGAAACCGTCGAGGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGTGGTACTATCCAAGCTATTTCTAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTATATCTTTGGCCTCTCGATGGCTGATGATGAGGTAAGACATAGACTGTTGGATACTTTTGGTAAAAAAGATAGGGAAATTCTTGATTATTCAACGCCGGATCGAATCATGTCCAATGGTCATTGGAATTTTGTCTATCCTTCTATTCTTCAAAATAATTTTGATTTGTTAGCGAAAAAGCGAAGAAATAGGTTCGCCATTCCATTACAGTATCATCAAGAACAAGAGAAAGAACCAATATCCTGTTTTGGGATTTCGATTGAAATACCCTTTATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCACGATACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACCCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAATATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGTTAAATTGGCACTTTCTCCCTCATGATTCTTGGGAAGAGACATCAGCAAAAATTCACCTTGGACAATTTATTTGCGAAAATGAGCAACTGTTCATGGTCATTATGGGGAAATCCTTTACAAAGGGGATAGGTTAG
More
|
||||||||||
| Protein seq | MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEDFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQAISSQDILHSVTIPSKSLILVQNDQYVESEQMGKCTGVPMFIMRPNINMVIFVDYQKQAIYGYCQYIFGLSMADDEVRHRLLDTFGKKDREILDYSTPDRIMSNGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISIEIPFMGVLRRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKLNWHFLPHDSWEETSAKIHLGQFICENEQLFMVIMGKSFTKGIG |
||||||||||
| Function | DNA-directed RNA polymerase subunit beta'' [UniProtKB/Swiss-Prot:P0C509] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16830 | LOC_Os04g16830.1 | Chr04 | 9190922 | 9195969 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTATCTCCCGCTATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTATGTATTAACGATTGGAAACCGTCGAGGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGTGGTACTATCCAAGCTATTTCTAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTATATCTTTGGCCTCTCGATGGCTGATGATGAGGTAAGACATAGACTGTTGGATACTTTTGGTAAAAAAGATAGGGAAATTCTTGATTATTCAACGCCGGATCGAATCATGTCCAATGGTCATTGGAATTTTGTCTATCCTTCTATTCTTCAAAATAATTTTGATTTGTTAGCGAAAAAGCGAAGAAATAGGTTCGCCATTCCATTACAGTATCATCAAGAACAAGAGAAAGAACCAATATCCTGTTTTGGGATTTCGATTGAAATACCCTTTATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCACGATACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACCCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAATATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGTTAAATTGGCACTTTCTCCCTCATGATTCTTGGGAAGAGACATCAGCAAAAATTCACCTTGGACAATTTATTTGCGAAAATGAGCAACTGTTCATGGTCATTATGGGGAAATCCTTTACAAAGGGGATAGGTTAG
More
|
|||||||
| Protein seq | MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEDFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQAISSQDILHSVTIPSKSLILVQNDQYVESEQMGKCTGVPMFIMRPNINMVIFVDYQKQAIYGYCQYIFGLSMADDEVRHRLLDTFGKKDREILDYSTPDRIMSNGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISIEIPFMGVLRRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKLNWHFLPHDSWEETSAKIHLGQFICENEQLFMVIMGKSFTKGIG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.316089 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g24339AA | RBH | 30.964777 | 28.905397 | 20.179388 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g24614 | RBH | 11.350488 | 10.548347 | 5.470841 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035981 | RBH | 21.610298 | 28.526060 | 71.100998 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005530 | RBH | 30.798918 | 35.496479 | 87.726944 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015390 | RBH | 5.522130 | 0.791962 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019760 | SBH | 26.177059 | 0.0 | 15.716288 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015380 | RBH | 9.819145 | 16.596857 | 20.090782 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
