Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g62550 | OGI:03047390 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:35414074-35416036 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTTTTGCCGGGTTGGCCGAAAGTTCGGTCGACCAATTTCATTAAGATTGGGAGAAAGGATCATTACAATAGAAGCTTACAACGACGAAATGATTGGGGAAAAAACCCCAACCATGTAAGCTATAGTTGTATGCTACAGGGATTACAAATTAATCATTATCGCCATTACAAGTGGTGAAAATTCCTGCCGACTTCCAAATGAGGATCTCCTCCTTGATGTCGCTCACTAGCTGCTCTGTGCTTCAAAATTTCTGCTCGAACACTCGCGCATTACGCTCCTTCCACAGGAACCAGCAGGTTAGTGCGAAGACGCCGTCGAAAATGTCCCTATAGCCCGTCCAAAAATTCAGTCTCGCCGCCATCCACCATTCAGTTAGGCTTGTATCGTTGATTGTTGGTGGCGCAAAGCCGATGCCAATCCATCTTTGCATCAAAGTCCAGACTCTCCTGGATAAATCGCAGGTTAGGAAAAGATGCAAACAGCTCTCCTCCTCTCGCTGACATAAGTGGCAAGAATCGTCGTGCAACCACCCTCTCTTCTCAAGATTATCAGCTGTTAAACAACGACCTTTGGCCGCCAGCCACAGGAAGAATCACACCCAGGAGGGAGCCTTGATATGCCAGATAAGTTCACTGAATGGGCAGATCTTCCTTGCCATGTAGAAGAGCTCATATGCCGAAGAGGCTGAGAGCTGGCCATCGGCAGAGAACTTCCACCGAATGGTATCATCTTCCCGATTGAGAACCACCTCCTGAATCTCGTCCCATAGCTGAAAGAACTGCGCTATAGCTTCATTTGAGAGTGCACCTCGCAGGTCTCGCACCCATCTATTGTTGCTCAGCGCCTGAGATATTGTAATTTGGGACCGGCCCACATAAGTGTAAAGGGTCGGCCATCTCCAAGAAATGCTGTGTCCATTCAACCAGTTTGCTGTCCAGAATTTTGTGTCTTTGCCATTGCCAACACAAAACTCGGCGGCAGAACTGAAAATTCGCTCCACATCTAATCCCAGGCGATATCCTGCCATGGCCCAAGGACGGTTTTTCTGTTCTATACTTTTGACTAGCCACTTGAGTCTCAGCGCCTGTCCAAAAGCATCCAGGTTTCACTTGAGTCCCCAGTCCTCCATTTGTCACCGGCACACAAACATTTTTCCAGGCCACGAGAATATATATATATAGTTAATTTAAACATGCATATTTGTAGCCATATATATATGTGCACATCCTGGTTAATCATTCTGGTATTAGAACAAAAAAAAAAGAAGAGAGAAACTGCGCTGAGGTTTGAGCATCGGAGGGTTTTTTTTTTTTTGGTCTGGACAAGAGTTTGTACTGACTCAATGAATGTACAAGTGTACAAAGTATCATCAATATGGCAATATGAAACAAATACTACGCAAAGATTATGTGATTTCGCAGCTTGATACCTTGAGTGATGTGAGCATGGATGGATTGAGCGTTTGGCCATTTGCCACTCTCTCAATGCGTGACCTTCCAACAATCACTCCAACGGCCCAGGGGCTGCAGATCTTCAGTTCTTCACACCATCACACCCAGCAAACTGCGACAAAATGTTTCTATTAGTAATGCTTAAAATTGGAATGCTGGAAAAAAACGAGGAAAAAATAATCAATGAATAGGAATAATGGATCAAACCGGAACAAGAACTGAAGCGTGAATCGACGTTTCGCCCTCCCTCCGAGTCACCGCCGTCCCGCCTGACTCCCCACGCCTGATCTGACCGGCCGACGGCTACCACCTGAGCCAGATCTGTGCAGGAAACGTCGGCCCCCGCGCGAAACCTGGCTGCCAAGCCTTTCTCTCTATAAGACCTGGCCGGCCGACGACCGGGAACCGCTGCGCTTTCCGCCGCCGCCGGAGCTCGTGGTCGGCCTCTCGAGCTCATCGTGTGAGGCGAACAGTGTGCGAGGTGAGCAAGTGAGCCGCACGGCCCATTAT
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| CDS seq | ATGGCAGGATATCGCCTGGGATTAGATGTGGAGCGAATTTTCAGTTCTGCCGCCGAGTTTTGTGTTGGCAATGGCAAAGACACAAAATTCTGGACAGCAAACTGGTTGAATGGACACAGCATTTCTTGGAGATGGCCGACCCTTTACACTTATGTGGGCCGGTCCCAAATTACAATATCTCAGGCGCTGAGCAACAATAGATGGGTGCGAGACCTGCGAGGTGCACTCTCAAATGAAGCTATAGCGCAGTTCTTTCAGCTATGGGACGAGATTCAGGAGGTGGTTCTCAATCGGGAAGATGATACCATTCGGTGGAAGTTCTCTGCCGATGGCCAGCTCTCAGCCTCTTCGGCATATGAGCTCTTCTACATGGCAAGGAAGATCTGCCCATTCAGTGAACTTATCTGGCATATCAAGGCTCCCTCCTGGGTGTGA
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| Protein seq | MAGYRLGLDVERIFSSAAEFCVGNGKDTKFWTANWLNGHSISWRWPTLYTYVGRSQITISQALSNNRWVRDLRGALSNEAIAQFFQLWDEIQEVVLNREDDTIRWKFSADGQLSASSAYELFYMARKICPFSELIWHIKAPSWV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g62550 | LOC_Os03g62550.1 | Chr03 | 35414074 | 35416036 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGGATATCGCCTGGGATTAGATGTGGAGCGAATTTTCAGTTCTGCCGCCGAGTTTTGTGTTGGCAATGGCAAAGACACAAAATTCTGGACAGCAAACTGGTTGAATGGACACAGCATTTCTTGGAGATGGCCGACCCTTTACACTTATGTGGGCCGGTCCCAAATTACAATATCTCAGGCGCTGAGCAACAATAGATGGGTGCGAGACCTGCGAGGTGCACTCTCAAATGAAGCTATAGCGCAGTTCTTTCAGCTATGGGACGAGATTCAGGAGGTGGTTCTCAATCGGGAAGATGATACCATTCGGTGGAAGTTCTCTGCCGATGGCCAGCTCTCAGCCTCTTCGGCATATGAGCTCTTCTACATGGCAAGGAAGATCTGCCCATTCAGTGAACTTATCTGGCATATCAAGGCTCCCTCCTGGGTGTGA
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| Protein seq | MAGYRLGLDVERIFSSAAEFCVGNGKDTKFWTANWLNGHSISWRWPTLYTYVGRSQITISQALSNNRWVRDLRGALSNEAIAQFFQLWDEIQEVVLNREDDTIRWKFSADGQLSASSAYELFYMARKICPFSELIWHIKAPSWV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.176769 | 0.0 | 0.082230 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643433 | SBH | 0.665818 | 0.710207 | 0.441691 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02660 | RBH | 0.0 | 0.0 | 0.049556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643433 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041620 | RBH | 0.255608 | 0.000000 | 0.427363 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0605100 | RBH | 0.5148635 | 3.4743585 | 3.763146 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0431300 | SBH | 0 | 0 | 0.014794 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041380 | RBH | 0.000000 | 2.322688 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040941 | RBH | 0.324402 | 1.382530 | 2.020595 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
